Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 7.7e-150 533.9 288 100.0
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 3.9e-125 451.8 248 87.1
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 1.5e-124 449.9 250 84.8
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 2.5e-124 449.1 248 87.1
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 3.3e-124 448.7 250 86.0
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.3e-124 448.4 248 87.5
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 5.6e-124 448.0 252 83.7
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 5.6e-124 448.0 248 87.5
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 5.6e-124 448.0 248 87.5
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 5.6e-124 448.0 248 87.5
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 5.6e-124 448.0 251 85.3
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 1.2e-123 446.8 253 83.8
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 1.2e-123 446.8 250 84.0
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 1.2e-123 446.8 253 83.8
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 1.6e-123 446.4 251 84.9
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 2.1e-123 446.0 253 83.4
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 2.1e-123 446.0 252 86.1
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 2.1e-123 446.0 248 86.3
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 3.6e-123 445.3 250 84.4
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 3.6e-123 445.3 248 85.5
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 3.6e-123 445.3 250 84.8
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 4.7e-123 444.9 248 85.5
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 4.7e-123 444.9 248 84.7
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 6.2e-123 444.5 251 84.1
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 8.1e-123 444.1 251 84.5
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 8.1e-123 444.1 253 83.8
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 8.1e-123 444.1 251 83.7
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 1.1e-122 443.7 246 87.0
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 1.4e-122 443.4 252 83.3
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 1.8e-122 443.0 252 84.5
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 2.3e-122 442.6 248 85.5
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 2.3e-122 442.6 247 85.4
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 3.1e-122 442.2 248 83.9
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 4.0e-122 441.8 248 85.1
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 4.0e-122 441.8 252 82.9
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 4.0e-122 441.8 248 84.7
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 4.0e-122 441.8 253 84.6
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 4.0e-122 441.8 248 84.7
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 4.0e-122 441.8 253 83.4
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 4.0e-122 441.8 248 84.7
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 5.2e-122 441.4 253 83.0
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 6.8e-122 441.0 253 83.8
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 6.8e-122 441.0 248 84.7
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 6.8e-122 441.0 248 84.3
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 8.9e-122 440.7 246 84.6
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 8.9e-122 440.7 250 82.8
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 1.2e-121 440.3 253 82.2
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 1.2e-121 440.3 253 82.2
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 1.2e-121 440.3 248 83.5
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 1.2e-121 440.3 248 83.5
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 1.2e-121 440.3 246 85.4
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 1.2e-121 440.3 246 85.4
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 1.2e-121 440.3 248 84.7
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 1.2e-121 440.3 244 84.4
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 1.2e-121 440.3 248 84.7
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 1.5e-121 439.9 253 84.2
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 2.0e-121 439.5 252 83.3
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 2.0e-121 439.5 248 83.9
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 2.0e-121 439.5 253 84.2
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 2.0e-121 439.5 246 85.0
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 2.0e-121 439.5 246 85.0
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 2.6e-121 439.1 246 85.0
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 2.6e-121 439.1 253 83.0
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 2.6e-121 439.1 253 83.8
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 2.6e-121 439.1 252 82.5
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 2.6e-121 439.1 248 83.9
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 2.6e-121 439.1 248 83.9
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 3.4e-121 438.7 253 83.8
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 3.4e-121 438.7 248 83.5
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 4.4e-121 438.3 244 85.2
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 4.4e-121 438.3 249 83.5
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 5.8e-121 438.0 253 83.4
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 7.6e-121 437.6 246 85.4
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 7.6e-121 437.6 249 82.7
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 9.9e-121 437.2 246 85.4
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 9.9e-121 437.2 251 82.5
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 9.9e-121 437.2 250 82.8
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 1.7e-120 436.4 253 83.4
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 2.2e-120 436.0 246 84.6
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 3.7e-120 435.3 247 84.2
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 3.7e-120 435.3 245 84.5
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 1.1e-119 433.7 251 80.9
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.9e-119 433.0 244 84.4
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 3.2e-119 432.2 259 82.2
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 4.1e-119 431.8 248 83.1
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 5.4e-119 431.4 249 83.5
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 5.4e-119 431.4 242 85.5
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 5.4e-119 431.4 271 77.9
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 9.2e-119 430.6 248 83.1
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 4.6e-118 428.3 250 82.0
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 1.1e-116 423.7 242 83.1
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 9.6e-116 420.6 249 81.9
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 4.4e-113 411.8 252 79.4
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 9.3e-111 404.1 248 79.4
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 2.3e-109 399.4 250 76.4
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 2.3e-109 399.4 219 86.8
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 3.0e-109 399.1 228 84.6
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 9.6e-108 394.0 350 60.9
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 6.2e-107 391.3 264 74.6
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 3.8e-104 382.1 246 76.0
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 6.2e-99 364.8 201 85.6
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 3.0e-93 345.9 248 68.5
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 5.6e-92 341.7 191 88.0
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 3.5e-86 322.4 189 84.1
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 1.2e-81 307.4 171 87.7
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 3.4e-81 305.8 171 86.5
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 8.5e-80 301.2 181 83.4
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 1.2e-78 297.4 168 86.3
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 8.7e-77 291.2 165 83.0
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 1.6e-75 287.0 183 78.1
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 6.9e-74 281.6 185 74.1
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.2e-72 276.6 164 82.9
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.2e-71 272.3 164 80.5
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.2e-70 270.8 164 81.7
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 1.0e-69 267.7 191 72.8
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 9.1e-66 254.6 147 84.4
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.0e-65 253.4 213 63.8
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.3e-64 250.8 170 73.5
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 8.5e-64 248.1 154 80.5
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 7.2e-63 245.0 154 79.9
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 3.9e-61 239.2 142 79.6
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 2.0e-60 236.9 156 76.3
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 1.1e-55 221.1 148 75.7
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 1.8e-50 203.8 204 52.0
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.5e-49 199.5 151 68.2
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 3.8e-48 196.1 141 70.9
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 1.5e-36 157.5 93 79.6
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 3.7e-35 152.9 167 53.3
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 4.3e-31 139.4 76 89.5
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 1.7e-27 127.5 129 55.0
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 1.7e-24 117.5 71 80.3
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 2.8e-22 110.2 93 60.2
Dinv30726 Davidia involucrata HOM05D005716 ORTHO05D014961 8.0e-22 108.6 62 72.6
C05p14270 Brassica napus HOM05D013073 ORTHO05D014961 4.3e-15 86.3 56 66.1
C06p00300 Brassica napus HOM05D013073 ORTHO05D014961 1.2e-14 84.7 56 64.3
A04p26400 Brassica napus HOM05D005716 ORTHO05D099386 1.2e-12 78.2 46 71.7
BcaC08g42818 Brassica carinata HOM05D013073 ORTHO05D014961 2.6e-12 77.0 50 64.0


User provided reference genes

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