Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0128s0012 Marchantia polymorpha HOM05D004016 ORTHO05D004732 0.0e+00 1159.8 623 100.0
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 2.4e-10 71.6 104 45.2
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 9.9e-09 66.2 95 46.3
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 1.7e-08 65.5 97 51.5
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 2.2e-08 65.1 104 46.2
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 2.2e-08 65.1 121 43.0
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 2.2e-08 65.1 95 43.2
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 3.8e-08 64.3 95 47.4
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 3.8e-08 64.3 98 48.0
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 3.8e-08 64.3 98 49.0
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 4.9e-08 63.9 96 49.0
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 6.4e-08 63.5 105 46.7
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 6.4e-08 63.5 95 47.4
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 6.4e-08 63.5 106 48.1
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 8.4e-08 63.2 95 47.4
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 8.4e-08 63.2 95 46.3
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 8.4e-08 63.2 104 45.2
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 8.4e-08 63.2 106 44.3
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 1.1e-07 62.8 96 46.9
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 1.1e-07 62.8 111 43.2
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 1.4e-07 62.4 97 46.4
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 1.4e-07 62.4 98 46.9
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 1.4e-07 62.4 96 49.0
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 1.4e-07 62.4 98 48.0
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 1.9e-07 62.0 98 44.9
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 1.9e-07 62.0 102 47.1
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 1.9e-07 62.0 97 46.4
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 1.9e-07 62.0 97 46.4
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 1.9e-07 62.0 97 50.5
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 1.9e-07 62.0 95 46.3
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 2.4e-07 61.6 96 46.9
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 2.4e-07 61.6 99 43.4
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 2.4e-07 61.6 101 47.5
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 2.4e-07 61.6 95 50.5
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 2.4e-07 61.6 95 50.5
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 2.4e-07 61.6 99 45.5
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 2.4e-07 61.6 96 45.8
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 2.4e-07 61.6 94 45.7
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 2.4e-07 61.6 97 43.3
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 2.4e-07 61.6 97 47.4
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 3.2e-07 61.2 95 50.5
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 3.2e-07 61.2 98 43.9
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 3.2e-07 61.2 94 48.9
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 4.2e-07 60.8 117 40.2
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 4.2e-07 60.8 99 43.4
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 4.2e-07 60.8 100 44.0
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 4.2e-07 60.8 100 44.0
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 5.4e-07 60.5 97 45.4
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 5.4e-07 60.5 140 38.6
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 5.4e-07 60.5 106 42.5
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 7.1e-07 60.1 99 44.4
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 7.1e-07 60.1 104 46.2
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 7.1e-07 60.1 100 44.0
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 7.1e-07 60.1 140 38.6
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 7.1e-07 60.1 96 47.9
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 1.2e-06 59.3 95 50.5
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.2e-06 59.3 131 39.7
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 1.2e-06 59.3 131 38.9
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 1.2e-06 59.3 194 35.6
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 1.6e-06 58.9 119 38.7
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 1.6e-06 58.9 95 49.5
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 2.1e-06 58.5 97 47.4
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 2.1e-06 58.5 95 44.2
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 2.1e-06 58.5 99 44.4
Oeu040656.1 Olea europaea HOM05D004016 ORTHO05D004732 2.1e-06 58.5 95 47.4
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 2.1e-06 58.5 95 49.5
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 2.7e-06 58.2 94 45.7
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 2.7e-06 58.2 97 43.3
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 3.5e-06 57.8 107 37.4
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 3.5e-06 57.8 101 43.6
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 4.6e-06 57.4 96 44.8
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 4.6e-06 57.4 97 46.4
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 4.6e-06 57.4 145 35.2
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 4.6e-06 57.4 145 35.2
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 4.6e-06 57.4 98 48.0
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 4.6e-06 57.4 98 48.0
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 4.6e-06 57.4 95 42.1
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 4.6e-06 57.4 104 44.2
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 4.6e-06 57.4 104 44.2
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 4.6e-06 57.4 146 37.7
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 6.0e-06 57.0 97 44.3
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 6.0e-06 57.0 98 41.8
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 7.8e-06 56.6 108 47.2


User provided reference genes

Program Settings