Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0126s0042 Marchantia polymorpha HOM05D001202 ORTHO05D253419 1.8e-65 252.3 113 100.0
Mapoly0126s0046 Marchantia polymorpha HOM05D001202 ORTHO05D006564 1.2e-42 176.4 111 70.3
Mapoly0071s0044 Marchantia polymorpha HOM05D001202 ORTHO05D257124 4.4e-16 88.2 47 80.9
Mapoly0002s0309 Marchantia polymorpha HOM05D001202 ORTHO05D001728 2.8e-10 68.9 70 41.4
Mapoly0126s0043 Marchantia polymorpha HOM05D001202 ORTHO05D257238 6.2e-10 67.8 42 64.3
CDE08G0356 Ceratophyllum demersum HOM05D001202 ORTHO05D001728 2.3e-09 65.9 93 34.4
Glyma.14G040700 Glycine max HOM05D001202 ORTHO05D001728 4.0e-09 65.1 98 32.7
AagrBONN_evm.TU.Sc2ySwM_228.5152 Anthoceros agrestis HOM05D001202 ORTHO05D001728 6.8e-09 64.3 65 41.5
CsaV3_1G041860 Cucumis sativus L. HOM05D001202 ORTHO05D001728 1.2e-08 63.5 91 34.1
ClCG03G014360 Citrullus lanatus HOM05D001202 ORTHO05D001728 1.5e-08 63.2 92 31.5
MELO3C015601.2 Cucumis melo HOM05D001202 ORTHO05D001728 1.5e-08 63.2 91 33.0
TWI79G0847 Tripterygium wilfordii HOM05D001202 ORTHO05D001728 2.0e-08 62.8 72 36.1
AUR62021818 Chenopodium quinoa HOM05D001202 ORTHO05D001728 5.8e-08 61.2 76 36.8
COL.COLO4_18344 Corchorus olitorius HOM05D001202 ORTHO05D001728 5.8e-08 61.2 74 37.8
Duzib168G1552 Durio zibethinus HOM05D001202 ORTHO05D001728 5.8e-08 61.2 67 38.8
Lalb_Chr10g0105981 Lupinus albus HOM05D001202 ORTHO05D001728 5.8e-08 61.2 67 41.8
Nn7g37207 Nelumbo nucifera HOM05D001202 ORTHO05D001728 5.8e-08 61.2 74 35.1
Cpa.g.sc34.219 Carica papaya HOM05D001202 ORTHO05D001728 7.5e-08 60.8 67 37.3
AUR62012841 Chenopodium quinoa HOM05D001202 ORTHO05D001728 7.5e-08 60.8 76 36.8
Gorai.009G106200 Gossypium raimondii HOM05D001202 ORTHO05D001728 7.5e-08 60.8 67 37.3
LjContig00564g0024500 Lotus japonicus HOM05D001202 ORTHO05D001728 7.5e-08 60.8 89 31.5
Oeu032032.1 Olea europaea HOM05D001202 ORTHO05D001728 7.5e-08 60.8 64 42.2
THA.LOC104814479 Tarenaya hassleriana HOM05D001202 ORTHO05D001728 9.9e-08 60.5 72 36.1
Cfa010274 Carpinus fangiana HOM05D001202 ORTHO05D001728 1.3e-07 60.1 89 32.6
Mapoly0158s0025 Marchantia polymorpha HOM05D001202 ORTHO05D001728 1.3e-07 60.1 79 38.0
GSVIVG01037416001 Vitis vinifera HOM05D001202 ORTHO05D001728 1.3e-07 60.1 67 35.8
arahy.Tifrunner.gnm1.ann1.MH0DCU Arachis hypogaea HOM05D001202 ORTHO05D001728 1.7e-07 59.7 89 31.5
arahy.Tifrunner.gnm1.ann1.WWBH0C Arachis hypogaea HOM05D001202 ORTHO05D001728 1.7e-07 59.7 89 31.5
EL10Ac8g20258 Beta vulgaris HOM05D001202 ORTHO05D001728 1.7e-07 59.7 76 32.9
BcaC07g37978 Brassica carinata HOM05D001202 ORTHO05D001728 1.7e-07 59.7 77 33.8
Duzib150G0408 Durio zibethinus HOM05D001202 ORTHO05D001728 1.7e-07 59.7 67 37.3
HanXRQChr03g0075151 Helianthus annuus HOM05D001202 ORTHO05D001728 1.7e-07 59.7 79 31.6
Sc21g0000270 Simmondsia chinensis HOM05D001202 ORTHO05D001728 1.7e-07 59.7 67 38.8
Thecc.09G339400 Theobroma cacao HOM05D001202 ORTHO05D001728 1.7e-07 59.7 67 37.3
HPP92_000649 Vanilla planifolia HOM05D001202 ORTHO05D001728 1.7e-07 59.7 76 35.5
HPP92_000697 Vanilla planifolia HOM05D001202 ORTHO05D001728 1.7e-07 59.7 76 35.5
A08p12270 Brassica napus HOM05D001202 ORTHO05D001728 2.2e-07 59.3 77 33.8
BolC8t48360H Brassica oleracea HOM05D001202 ORTHO05D001728 2.2e-07 59.3 77 33.8
BraA08t33231Z Brassica rapa HOM05D001202 ORTHO05D001728 2.2e-07 59.3 77 33.8
Ca_06165_v3 Cicer arietinum L. HOM05D001202 ORTHO05D001728 2.2e-07 59.3 66 40.9
Hma1.2p1_0218F.1_g092810 Hydrangea macrophylla HOM05D001202 ORTHO05D001728 2.2e-07 59.3 100 33.0
Solyc12g099970.2 Solanum lycopersicum HOM05D001202 ORTHO05D001728 2.2e-07 59.3 89 32.6
Sopen12g034590 Solanum pennellii HOM05D001202 ORTHO05D001728 2.2e-07 59.3 89 32.6
PGSC0003DMG400004655 Solanum tuberosum HOM05D001202 ORTHO05D001728 2.2e-07 59.3 89 32.6
TAR633G2453 Trochodendron aralioides HOM05D001202 ORTHO05D001728 2.2e-07 59.3 88 33.0
VMungo0647G0332 Vigna mungo HOM05D001202 ORTHO05D001728 2.2e-07 59.3 55 43.6
Haze_23690 Corylus avellana HOM05D001202 ORTHO05D001728 2.9e-07 58.9 92 30.4
Gohir.D08G214300 Gossypium hirsutum HOM05D001202 ORTHO05D001728 2.9e-07 58.9 67 37.3
Gorai.004G228400 Gossypium raimondii HOM05D001202 ORTHO05D001728 2.9e-07 58.9 67 37.3
MBI19_g10812_MAGBIO Magnolia biondii HOM05D001202 ORTHO05D001728 2.9e-07 58.9 64 39.1
Actinidia06996 Actinidia chinensis HOM05D001202 ORTHO05D001728 3.7e-07 58.5 74 35.1
CAN.G484.13 Capsicum annuum HOM05D001202 ORTHO05D001728 3.7e-07 58.5 64 35.9
Ciclev10016186m.g Citrus clementina HOM05D001202 ORTHO05D001728 3.7e-07 58.5 76 39.5
Lalb_Chr04g0249581 Lupinus albus HOM05D001202 ORTHO05D001728 3.7e-07 58.5 80 32.5
Psat0s2281g0200 Pisum sativum HOM05D001202 ORTHO05D001728 3.7e-07 58.5 67 38.8
Sed0009781 Sechium edule HOM05D001202 ORTHO05D001728 3.7e-07 58.5 64 37.5
PGSC0003DMG400005545 Solanum tuberosum HOM05D001202 ORTHO05D001728 3.7e-07 58.5 89 34.8
Atru.chr3.2928 Acer truncatum HOM05D001202 ORTHO05D001728 4.9e-07 58.2 76 38.2
AL7G38680 Arabidopsis lyrata HOM05D001202 ORTHO05D001728 4.9e-07 58.2 74 33.8
Glyma.02G275500 Glycine max HOM05D001202 ORTHO05D001728 4.9e-07 58.2 56 41.1
Nn1g03192 Nelumbo nucifera HOM05D001202 ORTHO05D001728 4.9e-07 58.2 84 31.0
SHI25152 Sapria himalayana HOM05D001202 ORTHO05D001728 4.9e-07 58.2 68 41.2
Aqoxy4G02340 Aquilegia oxysepala HOM05D001202 ORTHO05D001728 6.4e-07 57.8 77 31.2
BcaB04g18378 Brassica carinata HOM05D001202 ORTHO05D001728 6.4e-07 57.8 72 34.7
BcaC06g33476 Brassica carinata HOM05D001202 ORTHO05D001728 6.4e-07 57.8 67 37.3
A03p49760 Brassica napus HOM05D001202 ORTHO05D001728 6.4e-07 57.8 67 37.3
C07p47820 Brassica napus HOM05D001202 ORTHO05D001728 6.4e-07 57.8 67 37.3
BolC7t45304H Brassica oleracea HOM05D001202 ORTHO05D001728 6.4e-07 57.8 67 37.3
BraA03t14072Z Brassica rapa HOM05D001202 ORTHO05D001728 6.4e-07 57.8 67 37.3
Carub.0007s2517 Capsella rubella HOM05D001202 ORTHO05D001728 6.4e-07 57.8 72 34.7
CiPaw.01G150500 Carya illinoinensis HOM05D001942 ORTHO05D001996 6.4e-07 57.8 80 36.2
Thhalv10025902m.g Eutrema salsugineum HOM05D001202 ORTHO05D001728 6.4e-07 57.8 72 34.7
Gohir.A05G102300 Gossypium hirsutum HOM05D001202 ORTHO05D001728 6.4e-07 57.8 67 35.8
Gohir.A08G197100 Gossypium hirsutum HOM05D001202 ORTHO05D001728 6.4e-07 57.8 67 37.3
Gohir.D05G102000 Gossypium hirsutum HOM05D001202 ORTHO05D001728 6.4e-07 57.8 67 35.8
Nitab4.5_0001925g0200 Nicotiana tabacum HOM05D001202 ORTHO05D001728 6.4e-07 57.8 63 38.1
Peaxi162Scf00062g00921 Petunia axillaris HOM05D001202 ORTHO05D001728 6.4e-07 57.8 63 41.3
Pp3c12_8780 Physcomitrium patens HOM05D001202 ORTHO05D001728 6.4e-07 57.8 56 41.1
Rhsim13G0201600 Rhododendron simsii HOM05D001202 ORTHO05D001728 6.4e-07 57.8 89 33.7
RcHm_v2.0_Chr5g0050101 Rosa chinensis HOM05D001202 ORTHO05D001728 6.4e-07 57.8 67 35.8
Sp7g14880 Schrenkiella parvula HOM05D001202 ORTHO05D001728 6.4e-07 57.8 72 34.7
TPR.G11308 Trifolium pratense HOM05D001202 ORTHO05D001728 6.4e-07 57.8 67 37.3
TWI31G0264 Tripterygium wilfordii HOM05D001202 ORTHO05D001728 6.4e-07 57.8 78 29.5
Aa31LG2G12420 Aethionema arabicum HOM05D001202 ORTHO05D001728 8.3e-07 57.4 75 32.0
ATR1096G035 Amborella trichopoda HOM05D001202 ORTHO05D001728 8.3e-07 57.4 64 39.1
BcaB08g36480 Brassica carinata HOM05D001202 ORTHO05D001728 8.3e-07 57.4 72 33.3
Cre10.g457500 Chlamydomonas reinhardtii HOM05D001202 ORTHO05D001728 8.3e-07 57.4 59 39.0
ClCG02G002880 Citrullus lanatus HOM05D001202 ORTHO05D001728 8.3e-07 57.4 99 35.4
Cc01_g06750 Coffea canephora HOM05D001202 ORTHO05D001728 8.3e-07 57.4 62 37.1
FAN19G0587 Fragaria x ananassa HOM05D001202 ORTHO05D001728 8.3e-07 57.4 67 35.8
Oeu002778.1 Olea europaea HOM05D001202 ORTHO05D001728 8.3e-07 57.4 77 32.5
Potri.001G220800 Populus trichocarpa HOM05D001202 ORTHO05D001728 8.3e-07 57.4 64 39.1
SEGI_21925 Sequoiadendron giganteum HOM05D001202 ORTHO05D001728 8.3e-07 57.4 65 41.5
EL10Ac9g22373 Beta vulgaris HOM05D001202 ORTHO05D001728 1.1e-06 57.0 64 39.1
BcaNung06745 Brassica carinata HOM05D001202 ORTHO05D001728 1.1e-06 57.0 65 36.9
CsaV3_7G002490 Cucumis sativus L. HOM05D001202 ORTHO05D001728 1.1e-06 57.0 72 41.7
FvH4_1g28790 Fragaria vesca HOM05D001202 ORTHO05D001728 1.1e-06 57.0 67 35.8
Pp3c4_19530 Physcomitrium patens HOM05D001202 ORTHO05D001728 1.1e-06 57.0 62 40.3
MSTRG.7133 Avicennia marina HOM05D001202 ORTHO05D001728 1.4e-06 56.6 76 30.3
AUR62037163 Chenopodium quinoa HOM05D001202 ORTHO05D001728 1.4e-06 56.6 64 39.1
MELO3C024193.2 Cucumis melo HOM05D001202 ORTHO05D001728 1.4e-06 56.6 99 35.4
PSO339G1837 Papaver somniferum HOM05D001202 ORTHO05D001728 1.4e-06 56.6 64 37.5
PSO384G0704 Papaver somniferum HOM05D001202 ORTHO05D001728 1.4e-06 56.6 64 37.5
PSO675G1580 Papaver somniferum HOM05D001202 ORTHO05D001728 1.4e-06 56.6 64 35.9
Phvul.008G206100 Phaseolus vulgaris HOM05D001202 ORTHO05D001728 1.4e-06 56.6 56 41.1
FAN23G2329 Fragaria x ananassa HOM05D001202 ORTHO05D001728 1.9e-06 56.2 67 35.8
FAN26G3255 Fragaria x ananassa HOM05D001202 ORTHO05D001728 1.9e-06 56.2 67 35.8
Nitab4.5_0002478g0060 Nicotiana tabacum HOM05D001202 ORTHO05D001728 1.9e-06 56.2 77 37.7
TAR626G1827 Trochodendron aralioides HOM05D001202 ORTHO05D001728 1.9e-06 56.2 75 32.0
Lsat_1_v5_gn_9_103900 Lactuca sativa HOM05D001202 ORTHO05D001728 2.4e-06 55.8 74 33.8
MBI13_g32098_MAGBIO Magnolia biondii HOM05D001202 ORTHO05D001728 2.4e-06 55.8 64 37.5
Sed0019729 Sechium edule HOM05D001202 ORTHO05D001728 2.4e-06 55.8 99 35.4
TAR623G0112 Trochodendron aralioides HOM05D001202 ORTHO05D001728 2.4e-06 55.8 64 37.5
vmacro04100 Vaccinium macrocarpon HOM05D001202 ORTHO05D001728 2.4e-06 55.8 67 35.8
GSVIVG01005136001 Vitis vinifera HOM05D001202 ORTHO05D001728 2.4e-06 55.8 64 37.5
BcaC04g19517 Brassica carinata HOM05D001202 ORTHO05D001728 3.2e-06 55.5 72 31.9
A10p18890 Brassica napus HOM05D001202 ORTHO05D001728 3.2e-06 55.5 72 31.9
C09p54890 Brassica napus HOM05D001202 ORTHO05D001728 3.2e-06 55.5 72 31.9
BolC2t07111H Brassica oleracea HOM05D001202 ORTHO05D001728 3.2e-06 55.5 69 33.3
BolC9t58350H Brassica oleracea HOM05D001202 ORTHO05D001728 3.2e-06 55.5 72 31.9
BraA10t43968Z Brassica rapa HOM05D001202 ORTHO05D001728 3.2e-06 55.5 72 31.9
CiPaw.14G089400 Carya illinoinensis HOM05D001202 ORTHO05D001728 3.2e-06 55.5 66 34.8
AUR62025114 Chenopodium quinoa HOM05D001202 ORTHO05D001728 3.2e-06 55.5 64 39.1
CsaV3_6G048260 Cucumis sativus L. HOM05D001202 ORTHO05D001728 3.2e-06 55.5 74 33.8
Oeu057023.1 Olea europaea HOM05D001202 ORTHO05D001728 3.2e-06 55.5 66 36.4
SGA_v2.0_scaffold239G43971 Striga asiatica HOM05D001202 ORTHO05D001728 3.2e-06 55.5 72 29.2
TWI63G0547 Tripterygium wilfordii HOM05D001202 ORTHO05D001728 3.2e-06 55.5 75 33.3
unitig_749.g13687 Utricularia gibba HOM05D001202 ORTHO05D001728 3.2e-06 55.5 67 32.8
MSTRG.21329 Avicennia marina HOM05D001202 ORTHO05D001728 4.1e-06 55.1 64 37.5
Eucgr.J00639 Eucalyptus grandis HOM05D001202 ORTHO05D001728 4.1e-06 55.1 63 36.5
Lj2A936G15 Lonicera japonica HOM05D001202 ORTHO05D001728 4.1e-06 55.1 79 35.4
MBI13_g31588_MAGBIO Magnolia biondii HOM05D001202 ORTHO05D001728 4.1e-06 55.1 64 37.5
PGR004G2341 Punica granatum HOM05D001202 ORTHO05D001728 4.1e-06 55.1 75 34.7
Actinidia02286 Actinidia chinensis HOM05D001202 ORTHO05D001728 5.4e-06 54.7 75 33.3
DCAR_018972 Daucus carota HOM05D001202 ORTHO05D001728 5.4e-06 54.7 63 36.5
Eucgr.L00156 Eucalyptus grandis HOM05D001202 ORTHO05D001728 5.4e-06 54.7 78 32.1
Sp6g23350 Schrenkiella parvula HOM05D001202 ORTHO05D001728 5.4e-06 54.7 67 32.8
Sed0012742 Sechium edule HOM05D001202 ORTHO05D001728 5.4e-06 54.7 98 32.7
Aqoxy1G00020 Aquilegia oxysepala HOM05D001202 ORTHO05D001728 7.1e-06 54.3 62 38.7
CBR_g4892 Chara braunii HOM05D001202 ORTHO05D001728 7.1e-06 54.3 67 37.3
Lalb_Chr12g0195961 Lupinus albus HOM05D001202 ORTHO05D001728 7.1e-06 54.3 64 35.9
Os03g0319100 Oryza sativa ssp. japonica HOM05D001202 ORTHO05D001728 7.1e-06 54.3 54 44.4
MBI16_g22135_MAGBIO Magnolia biondii HOM05D001202 ORTHO05D001728 9.2e-06 53.9 73 28.8
THA.LOC104810958 Tarenaya hassleriana HOM05D001202 ORTHO05D001728 9.2e-06 53.9 63 38.1
THA.LOC104812784 Tarenaya hassleriana HOM05D001202 ORTHO05D001728 9.2e-06 53.9 65 35.4


User provided reference genes

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