Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 0.0e+00 2460.3 1337 100.0
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 0.0e+00 1359.7 1252 61.0
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 0.0e+00 1162.1 1265 53.7
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 0.0e+00 1146.0 1176 55.9
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 1.2e-266 924.1 1258 46.1
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 9.5e-259 897.9 1264 44.1
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 1.5e-251 874.0 1265 43.8
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 5.8e-248 862.1 1245 42.6
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 1.3e-247 860.9 1231 44.1
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 3.5e-245 852.8 1288 43.0
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 4.6e-245 852.4 1260 43.2
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 1.7e-244 850.5 1259 43.0
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 1.7e-244 850.5 1280 42.7
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 3.0e-244 849.7 1254 42.8
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 5.1e-244 849.0 1260 43.1
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 1.2e-242 844.3 1211 43.1
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 2.8e-242 843.2 1264 43.5
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 3.6e-242 842.8 1283 42.2
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 4.7e-242 842.4 1303 42.1
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 6.2e-242 842.0 1252 43.1
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 8.1e-242 841.6 1288 42.5
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 8.1e-242 841.6 1261 43.2
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 1.4e-241 840.9 1284 42.1
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 2.3e-241 840.1 1251 42.9
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 4.0e-241 839.3 1271 43.0
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 5.2e-241 839.0 1270 42.9
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 8.9e-241 838.2 1207 43.5
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 2.0e-240 837.0 1270 43.0
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 2.6e-240 836.6 1241 42.8
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 3.4e-240 836.3 1259 43.0
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 4.4e-240 835.9 1260 42.7
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 5.8e-240 835.5 1264 43.0
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 1.3e-239 834.3 1250 43.0
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 1.7e-239 833.9 1256 42.9
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 2.2e-239 833.6 1190 45.5
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 1.4e-238 830.9 1260 42.7
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 2.4e-238 830.1 1261 42.4
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 5.4e-238 828.9 1254 43.5
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 9.2e-238 828.2 1243 42.9
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 4.6e-237 825.9 1263 41.6
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 6.0e-237 825.5 1203 43.0
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 1.3e-236 824.3 1253 42.7
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 1.3e-236 824.3 1216 43.1
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 5.1e-236 822.4 1261 41.4
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.1e-236 822.4 1271 42.2
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 8.6e-236 821.6 1227 42.5
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 4.7e-234 815.8 1246 42.0
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.1e-233 814.7 1271 41.8
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 2.4e-233 813.5 1212 43.2
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 3.1e-233 813.1 1255 41.8
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 3.1e-233 813.1 1283 42.3
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 8.9e-233 811.6 1271 41.9
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 1.5e-232 810.8 1288 41.8
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 2.6e-232 810.1 1295 41.7
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 2.6e-232 810.1 1295 41.7
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 3.4e-232 809.7 1263 41.6
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.7e-231 807.4 1271 41.7
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 2.2e-231 807.0 1281 41.7
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 2.9e-231 806.6 1295 41.4
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 2.9e-231 806.6 1242 41.8
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 6.4e-231 805.4 1265 40.7
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 1.4e-230 804.3 1253 41.6
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 1.9e-230 803.9 1255 41.9
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 9.2e-230 801.6 1264 42.2
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 2.7e-229 800.0 1228 42.3
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.5e-229 799.7 1220 42.1
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 6.0e-229 798.9 1193 43.3
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 1.7e-228 797.3 1261 41.7
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 2.3e-228 797.0 1256 40.8
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 1.6e-226 790.8 1257 41.2
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 1.6e-226 790.8 1236 41.6
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 3.6e-226 789.6 1254 41.3
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 8.1e-226 788.5 1275 41.6
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 8.1e-226 788.5 1275 41.6
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 1.1e-225 788.1 1282 40.9
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 6.9e-225 785.4 1237 41.3
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 9.0e-225 785.0 1263 41.3
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 2.0e-224 783.9 1265 40.9
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 2.6e-224 783.5 1251 41.6
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 1.3e-223 781.2 1207 42.6
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 1.7e-223 780.8 1254 41.2
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 4.9e-223 779.2 1256 41.3
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 3.2e-222 776.5 1266 40.4
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 6.0e-221 772.3 1250 41.1
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 8.7e-220 768.5 1198 42.2
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 1.5e-219 767.7 1243 41.1
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 9.0e-217 758.4 1264 39.8
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 1.7e-215 754.2 1272 39.9
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 8.4e-215 751.9 1263 39.6
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 1.1e-214 751.5 1511 36.9
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 3.3e-211 740.0 1236 40.0
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 7.4e-211 738.8 1388 38.5
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 4.0e-209 733.0 1284 39.3
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 3.4e-208 729.9 1228 40.1
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 1.1e-206 724.9 1466 35.8
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 1.1e-206 724.9 1274 39.4
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 1.6e-205 721.1 1261 38.7
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 8.2e-202 708.8 1184 40.6
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 1.5e-192 677.9 1242 37.9
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 1.4e-190 671.4 1184 38.2
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 4.8e-186 656.4 870 45.4
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 5.5e-182 642.9 1239 37.4
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 2.3e-180 637.5 1202 37.6
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 3.0e-180 637.1 1195 37.2
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 2.8e-178 630.6 1128 38.0
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 1.2e-176 625.2 1240 36.5
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 3.2e-174 617.1 1138 36.6
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.1e-171 608.6 1092 38.2
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 1.4e-169 601.7 967 39.6
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 4.2e-166 590.1 1242 35.3
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 7.5e-163 579.3 1044 38.6
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 6.6e-143 513.1 785 40.4
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 2.0e-139 501.5 780 41.4
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.1e-137 493.8 689 42.7
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 3.0e-127 461.1 659 42.3
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 3.5e-120 437.6 707 39.7
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 6.0e-120 436.8 713 39.3
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 8.6e-119 433.0 679 42.1
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 7.1e-105 386.7 734 36.6
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 3.5e-104 384.4 618 39.5
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 7.8e-104 383.3 638 39.2
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 3.9e-87 327.8 603 36.0
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 3.8e-74 284.6 532 36.1
Nitab4.5_0005137g0010 Nicotiana tabacum HOM05D004065 ORTHO05D004806 2.4e-68 265.4 501 38.7
Solyc06g042960.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 4.5e-67 261.2 491 39.1
Peaxi162Scf00658g00725 Petunia axillaris HOM05D004065 ORTHO05D004806 3.3e-62 245.0 461 39.3
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 3.5e-59 235.0 255 51.0
AagrBONN_evm.TU.Sc2ySwM_344.348 Anthoceros agrestis HOM05D004065 ORTHO05D004806 6.7e-55 220.7 237 52.3
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 5.3e-52 211.1 393 36.9
QL08p059051 Quercus lobata HOM05D004065 ORTHO05D004806 3.2e-49 201.8 390 37.2
Cpa.g.sc1.377 Carica papaya HOM05D004065 ORTHO05D004806 3.6e-48 198.4 385 37.4
AagrBONN_evm.TU.Sc2ySwM_344.349 Anthoceros agrestis HOM05D004065 ORTHO05D004806 3.1e-44 185.3 225 48.4
FvH4_7g22002 Fragaria vesca HOM05D004065 ORTHO05D004806 5.9e-43 181.0 124 71.0
Psat6g236080 Pisum sativum HOM05D004065 ORTHO05D004806 5.0e-42 177.9 351 37.9
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 5.0e-42 177.9 321 36.4
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.2e-41 174.9 260 45.0
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 8.0e-40 170.6 414 33.1
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 2.3e-39 169.1 363 34.4
Ah.16g107250 Amaranthus hybridus HOM05D004065 ORTHO05D004806 1.5e-33 149.8 351 33.3
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 9.8e-30 137.1 231 35.5
Os01g0974300 Oryza sativa ssp. japonica HOM05D004065 ORTHO05D004806 1.4e-28 133.3 179 39.7
Nn8g40630 Nelumbo nucifera HOM05D004065 ORTHO05D004806 8.0e-24 117.5 257 36.2
Oeu012240.1 Olea europaea HOM05D004065 ORTHO05D004806 4.0e-23 115.2 169 42.6
AagrBONN_evm.TU.Sc2ySwM_344.350 Anthoceros agrestis HOM05D004065 ORTHO05D004806 5.2e-23 114.8 64 84.4
MBI05_g10364_MAGBIO Magnolia biondii HOM05D004065 ORTHO05D004806 1.2e-22 113.6 131 44.3
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.4e-20 104.8 154 44.2
Hma1.2p1_1137F.1_g260730 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 1.2e-14 87.0 215 34.0
FAN01G0794 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.5e-11 75.5 181 32.6
arahy.Tifrunner.gnm1.ann1.JMTW06 Arachis hypogaea HOM05D004065 ORTHO05D004806 1.7e-10 73.2 61 55.7
Nitab4.5_0005137g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 5.1e-10 71.6 75 56.0
Nitab4.5_0001836g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 6.6e-10 71.2 76 55.3
Cre17.g707100 Chlamydomonas reinhardtii HOM05D004065 ORTHO05D004806 2.5e-09 69.3 94 37.2
Hma1.2p1_0067F.1_g037070 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 4.7e-08 65.1 147 32.0
Solyc06g042980.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 4.0e-07 62.0 60 60.0
SHI22581 Sapria himalayana HOM05D004065 ORTHO05D004806 8.9e-07 60.8 190 33.7
Peaxi162Scf00658g00733 Petunia axillaris HOM05D004065 ORTHO05D004806 2.6e-06 59.3 75 53.3
FAN03G1547 Fragaria x ananassa HOM05D004065 ORTHO05D004806 9.9e-06 57.4 95 35.8


User provided reference genes

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