Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0125s0038 Marchantia polymorpha HOM05D006407 ORTHO05D008079 4.1e-232 807.7 423 100.0
Pp3c19_21450 Physcomitrium patens HOM05D006407 ORTHO05D008079 1.0e-94 351.3 350 54.3
SEGI_39839 Sequoiadendron giganteum HOM05D006407 ORTHO05D008079 4.5e-90 335.9 336 53.0
SMO367G1011 Selaginella moellendorffii HOM05D006407 ORTHO05D008079 6.4e-84 315.5 326 51.2
CiPaw.14G043600 Carya illinoinensis HOM05D006407 ORTHO05D008079 1.2e-82 311.2 333 47.1
PGR083G0415 Punica granatum HOM05D006407 ORTHO05D008079 1.2e-82 311.2 333 49.5
Cc01_g16130 Coffea canephora HOM05D006407 ORTHO05D008079 6.0e-82 308.9 348 48.3
Cfa010568 Carpinus fangiana HOM05D006407 ORTHO05D008079 7.8e-82 308.5 329 48.3
Hma1.2p1_0161F.1_g071410 Hydrangea macrophylla HOM05D006407 ORTHO05D008079 1.0e-81 308.1 342 47.7
CSS0030734 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 1.7e-81 307.4 373 44.2
CSS0036527 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 5.0e-81 305.8 373 44.0
TWI18G0256 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 5.0e-81 305.8 328 48.5
TWI36G1400 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 5.0e-81 305.8 335 47.8
ATR0686G167 Amborella trichopoda HOM05D006407 ORTHO05D008079 6.6e-81 305.4 331 48.3
Cpa.g.sc8.72 Carica papaya HOM05D006407 ORTHO05D008079 8.6e-81 305.1 394 42.6
HanXRQChr08g0231421 Helianthus annuus HOM05D006407 ORTHO05D008079 8.6e-81 305.1 318 48.7
BcaB04g19579 Brassica carinata HOM05D006407 ORTHO05D008079 1.5e-80 304.3 326 48.2
Haze_03500 Corylus avellana HOM05D006407 ORTHO05D008079 1.9e-80 303.9 326 48.2
CANSAT01G1280 Cannabis sativa HOM05D006407 ORTHO05D008079 2.5e-80 303.5 325 49.5
Eucgr.H00725 Eucalyptus grandis HOM05D006407 ORTHO05D008079 2.5e-80 303.5 332 47.9
GSVIVG01006226001 Vitis vinifera HOM05D006407 ORTHO05D008079 2.5e-80 303.5 336 46.4
PGSC0003DMG400013943 Solanum tuberosum HOM05D006407 ORTHO05D008079 4.3e-80 302.8 327 48.9
Actinidia30017 Actinidia chinensis HOM05D006407 ORTHO05D008079 5.6e-80 302.4 365 44.7
BcaC04g23774 Brassica carinata HOM05D006407 ORTHO05D008079 5.6e-80 302.4 326 47.9
BolC9t53411H Brassica oleracea HOM05D006407 ORTHO05D008079 5.6e-80 302.4 326 47.9
Dinv28811 Davidia involucrata HOM05D006407 ORTHO05D008079 5.6e-80 302.4 324 47.2
Gorai.N003300 Gossypium raimondii HOM05D006407 ORTHO05D008079 7.3e-80 302.0 325 48.0
FAN24G2889 Fragaria x ananassa HOM05D006407 ORTHO05D008079 9.5e-80 301.6 349 46.4
C09p04840 Brassica napus HOM05D006407 ORTHO05D008079 1.2e-79 301.2 326 47.5
Ah.11g051020 Amaranthus hybridus HOM05D006407 ORTHO05D008079 1.6e-79 300.8 325 48.0
Manes.12G054200 Manihot esculenta HOM05D006407 ORTHO05D008079 1.6e-79 300.8 325 47.1
Oeu057833.1 Olea europaea HOM05D006407 ORTHO05D008079 1.6e-79 300.8 332 48.2
THA.LOC104802645 Tarenaya hassleriana HOM05D006407 ORTHO05D008079 1.6e-79 300.8 328 47.0
Carub.0008s0805 Capsella rubella HOM05D006407 ORTHO05D008079 2.1e-79 300.4 326 47.2
MSTRG.18495 Avicennia marina HOM05D006407 ORTHO05D008079 2.8e-79 300.1 329 47.1
TAR636G1997 Trochodendron aralioides HOM05D006407 ORTHO05D008079 2.8e-79 300.1 325 46.8
ECA247G2281 Erigeron canadensis HOM05D006407 ORTHO05D008079 3.6e-79 299.7 337 48.1
AT5G48470 Arabidopsis thaliana HOM05D006407 ORTHO05D008079 4.7e-79 299.3 326 46.9
FvH4_2g17800 Fragaria vesca HOM05D006407 ORTHO05D008079 4.7e-79 299.3 349 46.1
Gohir.A07G159200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 4.7e-79 299.3 328 47.0
Prupe.8G190300 Prunus persica HOM05D006407 ORTHO05D008079 4.7e-79 299.3 362 45.3
QL09p046404 Quercus lobata HOM05D006407 ORTHO05D008079 4.7e-79 299.3 324 47.5
A09p04530 Brassica napus HOM05D006407 ORTHO05D008079 6.2e-79 298.9 326 47.2
BraA09t36088Z Brassica rapa HOM05D006407 ORTHO05D008079 6.2e-79 298.9 326 47.2
Thhalv10004357m.g Eutrema salsugineum HOM05D006407 ORTHO05D008079 6.2e-79 298.9 326 46.3
PSO017G7241 Papaver somniferum HOM05D006407 ORTHO05D008079 8.0e-79 298.5 347 47.8
FAN27G2095 Fragaria x ananassa HOM05D006407 ORTHO05D008079 1.1e-78 298.1 349 45.8
FAN27G3088 Fragaria x ananassa HOM05D006407 ORTHO05D008079 1.1e-78 298.1 349 45.8
Sopen09g019480 Solanum pennellii HOM05D006407 ORTHO05D008079 1.1e-78 298.1 327 48.3
CARHR183610 Cardamine hirsuta HOM05D006407 ORTHO05D008079 1.4e-78 297.7 326 46.6
Aqoxy2G03962 Aquilegia oxysepala HOM05D006407 ORTHO05D008079 1.8e-78 297.4 326 46.3
Sc17g0001660 Simmondsia chinensis HOM05D006407 ORTHO05D008079 1.8e-78 297.4 341 46.0
Thecc.01G211000 Theobroma cacao HOM05D006407 ORTHO05D008079 1.8e-78 297.4 341 45.5
CsaV3_7G026830 Cucumis sativus L. HOM05D006407 ORTHO05D008079 2.3e-78 297.0 329 46.8
Lj1g0005258 Lotus japonicus HOM05D006407 ORTHO05D008079 3.1e-78 296.6 318 48.4
Sp2g18840 Schrenkiella parvula HOM05D006407 ORTHO05D008079 3.1e-78 296.6 351 45.3
Aa31sc527G10 Aethionema arabicum HOM05D006407 ORTHO05D008079 4.0e-78 296.2 326 46.6
FAN15G1719 Fragaria x ananassa HOM05D006407 ORTHO05D008079 4.0e-78 296.2 349 45.8
AL8G21320 Arabidopsis lyrata HOM05D006407 ORTHO05D008079 5.2e-78 295.8 326 46.0
Peaxi162Scf00335g00087 Petunia axillaris HOM05D006407 ORTHO05D008079 5.2e-78 295.8 387 43.9
Lsat_1_v5_gn_9_16300 Lactuca sativa HOM05D006407 ORTHO05D008079 6.8e-78 295.4 318 48.7
RcHm_v2.0_Chr6g0282821 Rosa chinensis HOM05D006407 ORTHO05D008079 8.9e-78 295.0 326 46.9
Solyc09g056160.4 Solanum lycopersicum HOM05D006407 ORTHO05D008079 8.9e-78 295.0 334 47.3
PSO675G1275 Papaver somniferum HOM05D006407 ORTHO05D008079 1.2e-77 294.7 400 44.0
arahy.Tifrunner.gnm1.ann1.FHDW0K Arachis hypogaea HOM05D006407 ORTHO05D008079 2.6e-77 293.5 318 48.7
Potri.002G251400 Populus trichocarpa HOM05D006407 ORTHO05D008079 2.6e-77 293.5 328 47.3
ClCG09G008210 Citrullus lanatus HOM05D006407 ORTHO05D008079 5.8e-77 292.4 414 42.0
Psat6g036520 Pisum sativum HOM05D006407 ORTHO05D008079 5.8e-77 292.4 319 47.3
HPP92_024258 Vanilla planifolia HOM05D006407 ORTHO05D008079 9.8e-77 291.6 350 46.6
Hund02795 Selenicereus undatus HOM05D006407 ORTHO05D008079 3.7e-76 289.7 346 45.4
Glyma.16G083300 Glycine max HOM05D006407 ORTHO05D008079 4.9e-76 289.3 369 43.1
Medtr1g007490 Medicago truncatula HOM05D006407 ORTHO05D008079 6.4e-76 288.9 318 47.2
unitig_64.g29771 Utricularia gibba HOM05D006407 ORTHO05D008079 6.4e-76 288.9 326 47.9
Ciclev10015489m.g Citrus clementina HOM05D006407 ORTHO05D008079 8.3e-76 288.5 318 47.5
arahy.Tifrunner.gnm1.ann1.Q8L9VW Arachis hypogaea HOM05D006407 ORTHO05D008079 1.4e-75 287.7 384 43.2
AUR62008121 Chenopodium quinoa HOM05D006407 ORTHO05D008079 4.1e-75 286.2 344 46.2
Glyma.03G089700 Glycine max HOM05D006407 ORTHO05D008079 4.1e-75 286.2 318 47.8
Sed0008140 Sechium edule HOM05D006407 ORTHO05D008079 4.1e-75 286.2 333 46.8
Rhsim13G0052700 Rhododendron simsii HOM05D006407 ORTHO05D008079 5.4e-75 285.8 312 47.1
Lalb_Chr07g0194511 Lupinus albus HOM05D006407 ORTHO05D008079 1.2e-74 284.6 318 46.5
Zm00001eb169280 Zea mays HOM05D006407 ORTHO05D008079 1.6e-74 284.3 329 45.6
COL.COLO4_26571 Corchorus olitorius HOM05D006407 ORTHO05D008079 2.7e-74 283.5 341 44.6
Phvul.008G108300 Phaseolus vulgaris HOM05D006407 ORTHO05D008079 3.5e-74 283.1 317 47.0
Migut.D00736 Erythranthe guttata HOM05D006407 ORTHO05D008079 6.0e-74 282.3 322 47.8
EL10Ac5g10625 Beta vulgaris HOM05D006407 ORTHO05D008079 1.3e-73 281.2 311 47.9
AagrBONN_evm.TU.Sc2ySwM_368.2294 Anthoceros agrestis HOM05D006407 ORTHO05D008079 1.7e-73 280.8 237 61.6
Lj1C101T0 Lonicera japonica HOM05D006407 ORTHO05D008079 8.6e-73 278.5 332 44.9
MD10G1151900 Malus domestica HOM05D006407 ORTHO05D008079 1.5e-72 277.7 317 47.3
vmacro02816 Vaccinium macrocarpon HOM05D006407 ORTHO05D008079 1.2e-71 274.6 297 48.1
Ca_12772_v3 Cicer arietinum L. HOM05D006407 ORTHO05D008079 4.7e-71 272.7 305 47.9
SalBow6G2639 Salvia bowleyana HOM05D006407 ORTHO05D008079 5.2e-70 269.2 330 43.9
Gohir.D07G167200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 1.2e-69 268.1 325 44.9
Nitab4.5_0003859g0020 Nicotiana tabacum HOM05D001236 ORTHO05D001090 9.2e-67 258.5 309 46.0
Nitab4.5_0000038g0130 Nicotiana tabacum HOM05D006407 ORTHO05D008079 7.8e-66 255.4 360 42.2
VMungo1383G2551 Vigna mungo HOM05D006407 ORTHO05D008079 8.6e-65 251.9 317 43.8
Os11g0425300 Oryza sativa ssp. japonica HOM05D006407 ORTHO05D008079 3.6e-63 246.5 296 46.6
Sabra02G0191100 Salix brachista HOM05D006407 ORTHO05D008079 8.1e-63 245.4 315 44.8
Atru.chr6.3545 Acer truncatum HOM05D006407 ORTHO05D008079 3.1e-62 243.4 243 50.6
SGA_v2.0_scaffold29G12072 Striga asiatica HOM05D006407 ORTHO05D008079 2.9e-60 236.9 382 38.5
CDE09G0438 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 1.9e-56 224.2 241 49.8
HPP92_024262 Vanilla planifolia HOM05D006407 ORTHO05D008079 1.1e-46 191.8 210 49.0
unitig_62.g23866 Utricularia gibba HOM05D006407 ORTHO05D008079 5.4e-43 179.5 292 39.0
BolC7t44437H Brassica oleracea HOM05D006407 ORTHO05D008079 2.4e-38 164.1 317 34.4
Duzib138G1048 Durio zibethinus HOM05D006407 ORTHO05D008079 1.2e-37 161.8 247 40.1
Nn1g08257 Nelumbo nucifera HOM05D006407 ORTHO05D008079 2.6e-37 160.6 170 47.6
C07p39170 Brassica napus HOM05D006407 ORTHO05D008079 3.8e-36 156.8 304 33.6
BcaC06g30794 Brassica carinata HOM05D006407 ORTHO05D008079 1.9e-35 154.5 273 35.2
MBI11_g07407_MAGBIO Magnolia biondii HOM05D006407 ORTHO05D003073 1.8e-33 147.9 165 48.5
Nn1g08232 Nelumbo nucifera HOM05D006407 ORTHO05D008079 1.5e-32 144.8 168 46.4
CBR_g12604 Chara braunii HOM05D001724 ORTHO05D007284 1.3e-28 131.7 280 32.9
AUR62028699 Chenopodium quinoa HOM05D006407 ORTHO05D008079 3.5e-26 123.6 150 47.3
DCAR_004768 Daucus carota HOM05D006407 ORTHO05D008079 1.6e-23 114.8 163 42.3
BraA06t26831Z Brassica rapa HOM05D006407 ORTHO05D008079 4.2e-19 100.1 131 44.3
Migut.D00733 Erythranthe guttata HOM05D006407 ORTHO05D008079 1.4e-17 95.1 111 44.1
Cre09.g393800 Chlamydomonas reinhardtii HOM05D006407 ORTHO05D008079 2.4e-14 84.3 342 27.2
A06p39160 Brassica napus HOM05D006407 ORTHO05D008079 9.1e-14 82.4 182 30.2
MCO11G451 Micromonas commoda HOM05D006407 ORTHO05D008079 3.2e-11 73.9 303 25.4
Oeu032606.1 Olea europaea HOM05D006407 ORTHO05D008079 1.8e-06 58.2 49 57.1
CDE02G0544 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 3.1e-06 57.4 77 36.4


User provided reference genes

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