Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0124s0058 Marchantia polymorpha HOM05D004000 ORTHO05D004629 9.4e-228 793.1 383 100.0
Mapoly0065s0055 Marchantia polymorpha HOM05D004000 ORTHO05D004629 1.6e-25 121.3 251 29.5
THA.LOC104816986 Tarenaya hassleriana HOM05D004000 ORTHO05D004629 4.6e-25 119.8 247 30.8
CARHR087290 Cardamine hirsuta HOM05D004000 ORTHO05D004629 6.1e-25 119.4 247 31.6
Cc05_g16490 Coffea canephora HOM05D004000 ORTHO05D004629 6.1e-25 119.4 249 30.1
Duzib268G1547 Durio zibethinus HOM05D004000 ORTHO05D004629 7.9e-25 119.0 248 29.4
Eucgr.F01477 Eucalyptus grandis HOM05D004000 ORTHO05D004629 7.9e-25 119.0 263 28.1
Solyc12g017310.3 Solanum lycopersicum HOM05D004000 ORTHO05D004629 7.9e-25 119.0 260 28.1
HPP92_020395 Vanilla planifolia HOM05D004000 ORTHO05D004629 7.9e-25 119.0 248 30.2
Actinidia37130 Actinidia chinensis HOM05D004000 ORTHO05D004629 1.8e-24 117.9 248 28.6
Sopen12g008120 Solanum pennellii HOM05D004000 ORTHO05D004629 1.8e-24 117.9 260 27.7
SGA_v2.0_scaffold49G18199 Striga asiatica HOM05D004000 ORTHO05D004629 1.8e-24 117.9 248 29.8
PSO339G1394 Papaver somniferum HOM05D004000 ORTHO05D004629 2.3e-24 117.5 256 28.5
HanXRQChr04g0125331 Helianthus annuus HOM05D004000 ORTHO05D004629 3.0e-24 117.1 248 28.6
HanXRQChr13g0408851 Helianthus annuus HOM05D004000 ORTHO05D004629 5.1e-24 116.3 241 31.1
THA.LOC104810272 Tarenaya hassleriana HOM05D004000 ORTHO05D004629 5.1e-24 116.3 247 30.0
TAR627G0690 Trochodendron aralioides HOM05D004000 ORTHO05D004629 5.1e-24 116.3 248 29.0
MSTRG.14568 Avicennia marina HOM05D004000 ORTHO05D004629 8.7e-24 115.5 248 29.4
Duzib187G0240 Durio zibethinus HOM05D004000 ORTHO05D004629 8.7e-24 115.5 248 28.2
SGA_v2.0_scaffold239G44016 Striga asiatica HOM05D004000 ORTHO05D004629 8.7e-24 115.5 248 29.8
unitig_744.g24504 Utricularia gibba HOM05D004000 ORTHO05D004629 8.7e-24 115.5 247 28.7
MSTRG.13084 Avicennia marina HOM05D004000 ORTHO05D004629 1.1e-23 115.2 248 28.6
Ciclev10005712m.g Citrus clementina HOM05D004000 ORTHO05D004629 1.1e-23 115.2 247 28.7
PSO384G1790 Papaver somniferum HOM05D004000 ORTHO05D004629 1.1e-23 115.2 253 28.5
CSS0006140 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 1.5e-23 114.8 247 29.6
Sc10g0007870 Simmondsia chinensis HOM05D004000 ORTHO05D004629 1.5e-23 114.8 248 29.0
Atru.chr1.77 Acer truncatum HOM05D004000 ORTHO05D004629 1.9e-23 114.4 248 29.4
Actinidia24665 Actinidia chinensis HOM05D004000 ORTHO05D004629 1.9e-23 114.4 248 28.6
Aqoxy2G00201 Aquilegia oxysepala HOM05D004000 ORTHO05D004629 1.9e-23 114.4 247 28.7
Pp3c10_17770 Physcomitrium patens HOM05D004000 ORTHO05D004629 3.3e-23 113.6 270 26.7
Aa31LG10G40 Aethionema arabicum HOM05D004000 ORTHO05D004629 4.3e-23 113.2 256 28.9
CDE05G0982 Ceratophyllum demersum HOM05D004000 ORTHO05D004629 4.3e-23 113.2 248 28.6
ECA240G0236 Erigeron canadensis HOM05D004000 ORTHO05D004629 4.3e-23 113.2 260 28.5
AT3G12760 Arabidopsis thaliana HOM05D004000 ORTHO05D004629 5.7e-23 112.8 249 30.5
CDE05G1666 Ceratophyllum demersum HOM05D004000 ORTHO05D004629 5.7e-23 112.8 248 28.6
Ca_03197_v3 Cicer arietinum L. HOM05D004000 ORTHO05D004629 5.7e-23 112.8 247 29.1
ECA236G3922 Erigeron canadensis HOM05D004000 ORTHO05D004629 5.7e-23 112.8 248 29.0
Nn8g41219 Nelumbo nucifera HOM05D004000 ORTHO05D004629 5.7e-23 112.8 251 29.1
Dinv19580 Davidia involucrata HOM05D004000 ORTHO05D004629 7.4e-23 112.5 247 29.6
PGSC0003DMG400009664 Solanum tuberosum HOM05D004000 ORTHO05D004629 7.4e-23 112.5 260 26.5
GSVIVG01036747001 Vitis vinifera HOM05D004000 ORTHO05D004629 7.4e-23 112.5 248 28.2
Rhsim06G0243100 Rhododendron simsii HOM05D004000 ORTHO05D004629 9.7e-23 112.1 247 28.7
TWI59G1464 Tripterygium wilfordii HOM05D004000 ORTHO05D004629 9.7e-23 112.1 248 28.6
VMungo1080G1629 Vigna mungo HOM05D004000 ORTHO05D004629 9.7e-23 112.1 247 28.7
Potri.008G083800 Populus trichocarpa HOM05D004000 ORTHO05D004629 1.3e-22 111.7 248 27.0
unitig_61.g26121 Utricularia gibba HOM05D004000 ORTHO05D004629 1.3e-22 111.7 248 27.8
CANSAT56G1070 Cannabis sativa HOM05D004000 ORTHO05D004629 1.6e-22 111.3 247 28.7
Nitab4.5_0006109g0060 Nicotiana tabacum HOM05D004000 ORTHO05D004629 1.6e-22 111.3 248 28.2
Phvul.005G049350 Phaseolus vulgaris HOM05D004000 ORTHO05D004629 1.6e-22 111.3 247 28.7
vmacro11690 Vaccinium macrocarpon HOM05D004000 ORTHO05D004629 1.6e-22 111.3 236 28.8
Carub.0003s1212 Capsella rubella HOM05D004000 ORTHO05D004629 2.2e-22 110.9 248 29.8
Migut.H01660 Erythranthe guttata HOM05D004000 ORTHO05D004629 2.2e-22 110.9 248 27.8
Lalb_Chr01g0015521 Lupinus albus HOM05D004000 ORTHO05D004629 2.2e-22 110.9 247 28.3
TAR629G3216 Trochodendron aralioides HOM05D004000 ORTHO05D004629 2.2e-22 110.9 248 27.8
Os06g0233400 Oryza sativa ssp. japonica HOM05D004000 ORTHO05D004629 2.8e-22 110.5 248 27.4
Psat0s1441g0160 Pisum sativum HOM05D004000 ORTHO05D004629 2.8e-22 110.5 247 28.3
QL04p091152 Quercus lobata HOM05D004000 ORTHO05D004629 2.8e-22 110.5 247 28.3
Zm00001eb194650 Zea mays HOM05D004000 ORTHO05D004629 2.8e-22 110.5 248 28.6
Cre12.g487400 Chlamydomonas reinhardtii HOM05D004000 ORTHO05D004629 3.7e-22 110.2 256 29.7
Sed0027383 Sechium edule HOM05D004000 ORTHO05D004629 3.7e-22 110.2 247 28.3
Solyc07g066650.4 Solanum lycopersicum HOM05D004000 ORTHO05D004629 3.7e-22 110.2 248 28.2
Sopen07g034800 Solanum pennellii HOM05D004000 ORTHO05D004629 3.7e-22 110.2 248 28.2
Nitab4.5_0002597g0020 Nicotiana tabacum HOM05D004000 ORTHO05D004629 4.8e-22 109.8 237 29.1
CBR_g22391 Chara braunii HOM05D004000 ORTHO05D004629 6.3e-22 109.4 238 29.4
TWI38G0870 Tripterygium wilfordii HOM05D004000 ORTHO05D004629 6.3e-22 109.4 248 27.8
CAN.G321.32 Capsicum annuum HOM05D004000 ORTHO05D004629 8.2e-22 109.0 258 27.1
Glyma.08G164900 Glycine max HOM05D004000 ORTHO05D004629 8.2e-22 109.0 247 28.3
Nitab4.5_0000388g0080 Nicotiana tabacum HOM05D004000 ORTHO05D004629 8.2e-22 109.0 237 28.3
arahy.Tifrunner.gnm1.ann1.UQZ7YG Arachis hypogaea HOM05D004000 ORTHO05D004629 2.4e-21 107.5 248 27.8
Prupe.4G131300 Prunus persica HOM05D004000 ORTHO05D004629 2.4e-21 107.5 247 27.9
Lj3g0014191 Lotus japonicus HOM05D004000 ORTHO05D004629 3.1e-21 107.1 247 27.9
Glyma.15G262200 Glycine max HOM05D004000 ORTHO05D004629 4.1e-21 106.7 247 27.9
Lalb_Chr20g0108471 Lupinus albus HOM05D004000 ORTHO05D004629 5.3e-21 106.3 247 27.5
CiPaw.11G059500 Carya illinoinensis HOM05D004000 ORTHO05D004629 6.9e-21 105.9 247 28.3
Oeu044963.4 Olea europaea HOM05D004000 ORTHO05D004629 9.1e-21 105.5 247 28.3
SalBow1G7638 Salvia bowleyana HOM05D004000 ORTHO05D004629 9.1e-21 105.5 271 26.2
ClCG09G022790 Citrullus lanatus HOM05D004000 ORTHO05D004629 1.2e-20 105.1 240 27.9
Nn7g36133 Nelumbo nucifera HOM05D004000 ORTHO05D004629 2.6e-20 104.0 242 29.3
Nitab4.5_0000029g0230 Nicotiana tabacum HOM05D004000 ORTHO05D004629 2.6e-20 104.0 281 27.8
Lsat_1_v5_gn_7_110801 Lactuca sativa HOM05D004000 ORTHO05D004629 1.0e-19 102.1 274 27.0
RcHm_v2.0_Chr5g0024051 Rosa chinensis HOM05D004000 ORTHO05D004629 1.3e-19 101.7 240 26.7
Peaxi162Scf00006g01617 Petunia axillaris HOM05D004000 ORTHO05D004629 1.7e-19 101.3 237 27.0
arahy.Tifrunner.gnm1.ann1.U2QCB7 Arachis hypogaea HOM05D004000 ORTHO05D004629 2.2e-19 100.9 254 27.2
Manes.17G000700 Manihot esculenta HOM05D004000 ORTHO05D004629 2.2e-19 100.9 242 25.6
FAN19G2643 Fragaria x ananassa HOM05D004000 ORTHO05D004629 3.8e-19 100.1 246 27.2
MD05G1234900 Malus domestica HOM05D004000 ORTHO05D004629 3.8e-19 100.1 257 27.6
QL04p092275 Quercus lobata HOM05D004000 ORTHO05D004629 3.8e-19 100.1 266 26.3
FAN23G0482 Fragaria x ananassa HOM05D000049 ORTHO05D004629 5.0e-19 99.8 246 26.8
FAN26G0293 Fragaria x ananassa HOM05D004000 ORTHO05D004629 1.9e-18 97.8 246 26.8
FvH4_1g16700 Fragaria vesca HOM05D000049 ORTHO05D004629 3.2e-18 97.1 246 26.8
PGR004G2637 Punica granatum HOM05D004000 ORTHO05D004629 3.2e-18 97.1 260 25.8
MD10G1211100 Malus domestica HOM05D004000 ORTHO05D004629 9.4e-18 95.5 267 27.0
Peaxi162Scf00452g00229 Petunia axillaris HOM05D004000 ORTHO05D004629 1.2e-17 95.1 163 31.9
vmacro09768 Vaccinium macrocarpon HOM05D004000 ORTHO05D004629 3.6e-17 93.6 295 24.4
FAN28G2261 Fragaria x ananassa HOM05D004000 ORTHO05D004629 7.9e-17 92.4 246 26.0
DCAR_016849 Daucus carota HOM05D004000 ORTHO05D004629 1.8e-16 91.3 171 29.8
Oeu034052.1 Olea europaea HOM05D004000 ORTHO05D004629 2.3e-16 90.9 159 31.4
Dinv42470 Davidia involucrata HOM05D004000 ORTHO05D004629 5.1e-16 89.7 223 26.5
Actinidia12763 Actinidia chinensis HOM05D004000 ORTHO05D004629 8.8e-16 89.0 159 30.8
PRCOL_00005347 Prasinoderma coloniale HOM05D004000 ORTHO05D004629 2.2e-14 84.3 250 26.4
Cpa.g.sc32.66 Carica papaya HOM05D004000 ORTHO05D004629 2.8e-14 84.0 162 28.4
FAN11G2975 Fragaria x ananassa HOM05D004000 ORTHO05D004629 2.8e-14 84.0 162 27.8
FAN16G0250 Fragaria x ananassa HOM05D004000 ORTHO05D004629 3.7e-14 83.6 162 27.8
FAN25G1212 Fragaria x ananassa HOM05D004000 ORTHO05D004629 3.7e-14 83.6 162 27.2
Lj2C12T8 Lonicera japonica HOM05D004000 ORTHO05D004629 3.7e-14 83.6 154 29.9
FAN21G3980 Fragaria x ananassa HOM05D004000 ORTHO05D004629 8.2e-14 82.4 162 27.8
Ah.01g015680 Amaranthus hybridus HOM05D004000 ORTHO05D004629 1.1e-13 82.0 250 26.0
Zm00001eb279840 Zea mays HOM05D004000 ORTHO05D004629 2.6e-12 77.4 201 24.9
FAN28G0737 Fragaria x ananassa HOM05D004000 ORTHO05D004629 2.2e-11 74.3 162 27.2
MELO3C012597.2 Cucumis melo HOM05D004000 ORTHO05D004629 6.5e-11 72.8 193 25.9
CsaV3_7G022990 Cucumis sativus L. HOM05D004000 ORTHO05D004629 6.5e-11 72.8 193 25.9
Cc04_g04900 Coffea canephora HOM05D002847 ORTHO05D003155 1.4e-10 71.6 199 27.6
SGA_v2.0_scaffold117G32320 Striga asiatica HOM05D002847 ORTHO05D003155 1.4e-10 71.6 201 26.9
Sed0027108 Sechium edule HOM05D004000 ORTHO05D004629 7.2e-10 69.3 137 27.0
MD09G1223800 Malus domestica HOM05D002847 ORTHO05D003155 1.4e-08 65.1 228 24.6
ECA232G4412 Erigeron canadensis HOM05D002847 ORTHO05D003155 2.3e-08 64.3 200 25.0
Mapoly0094s0035 Marchantia polymorpha HOM05D002847 ORTHO05D003155 2.3e-08 64.3 200 26.5
HPP92_008844 Vanilla planifolia HOM05D002847 ORTHO05D003155 5.2e-08 63.2 202 26.7
MD17G1220700 Malus domestica HOM05D002847 ORTHO05D003155 8.8e-08 62.4 199 24.1
Lsat_1_v5_gn_4_85780 Lactuca sativa HOM05D002847 ORTHO05D003155 1.1e-07 62.0 201 23.9
CSS0037197 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 1.5e-07 61.6 115 27.8
Gorai.009G353900 Gossypium raimondii HOM05D004000 ORTHO05D004629 1.5e-07 61.6 191 25.1
HanXRQChr09g0274551 Helianthus annuus HOM05D002847 ORTHO05D003155 1.5e-07 61.6 205 23.4
Sabra03G0131900 Salix brachista HOM05D002847 ORTHO05D003155 1.5e-07 61.6 201 25.4
AagrBONN_evm.TU.Sc2ySwM_228.2984 Anthoceros agrestis HOM05D002847 ORTHO05D003155 2.0e-07 61.2 160 26.9
CSS0038370 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 2.0e-07 61.2 115 27.8
PGR102G3296 Punica granatum HOM05D002847 ORTHO05D003155 2.0e-07 61.2 200 25.5
Actinidia25397 Actinidia chinensis HOM05D004000 ORTHO05D004629 3.3e-07 60.5 150 26.7
SEGI_20471 Sequoiadendron giganteum HOM05D004000 ORTHO05D004629 5.7e-07 59.7 93 34.4
Sc12g0008450 Simmondsia chinensis HOM05D002847 ORTHO05D003155 7.4e-07 59.3 200 23.0
HPP92_008868 Vanilla planifolia HOM05D002847 ORTHO05D003155 9.7e-07 58.9 160 26.9
Pp3c7_13750 Physcomitrium patens HOM05D002847 ORTHO05D003155 1.3e-06 58.5 201 26.9
ATR0184G023 Amborella trichopoda HOM05D002847 ORTHO05D003155 2.8e-06 57.4 165 26.1


User provided reference genes

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