Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0124s0030 Marchantia polymorpha HOM05D004776 ORTHO05D005777 4.6e-308 1060.4 555 100.0
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 1.9e-91 340.9 577 39.7
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 1.2e-90 338.2 575 38.4
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 1.6e-90 337.8 565 38.9
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 3.0e-89 333.6 564 38.5
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 3.9e-89 333.2 575 39.7
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 6.6e-89 332.4 579 38.2
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 1.9e-88 330.9 582 38.5
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 2.1e-87 327.4 583 38.4
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 2.8e-87 327.0 577 38.5
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 3.6e-87 326.6 575 37.6
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 6.2e-87 325.9 586 37.7
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 1.4e-86 324.7 568 37.5
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 1.8e-86 324.3 573 38.4
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 1.8e-86 324.3 570 38.1
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.3e-86 323.9 586 37.9
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 2.3e-86 323.9 584 38.5
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 3.1e-86 323.6 571 36.3
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.1e-86 323.6 586 37.7
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 4.0e-86 323.2 565 37.2
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 5.2e-86 322.8 582 37.8
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 5.2e-86 322.8 574 37.8
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 1.2e-85 321.6 578 37.7
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 1.5e-85 321.2 569 36.7
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 2.6e-85 320.5 571 38.2
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 5.8e-85 319.3 575 37.4
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 5.8e-85 319.3 570 37.7
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 5.8e-85 319.3 574 36.9
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 5.8e-85 319.3 576 38.2
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 7.5e-85 318.9 510 40.2
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 9.9e-85 318.5 576 38.5
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 9.9e-85 318.5 583 37.7
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 9.9e-85 318.5 574 37.3
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 1.3e-84 318.2 573 39.1
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 1.3e-84 318.2 572 38.6
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 1.3e-84 318.2 564 37.1
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 1.7e-84 317.8 573 37.5
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 2.2e-84 317.4 517 38.3
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 2.9e-84 317.0 576 39.6
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 2.9e-84 317.0 568 35.9
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 3.7e-84 316.6 627 37.0
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 4.9e-84 316.2 512 39.6
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 4.9e-84 316.2 587 37.5
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 4.9e-84 316.2 509 40.5
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 4.9e-84 316.2 573 37.3
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 6.4e-84 315.8 582 38.7
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 6.4e-84 315.8 582 38.7
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 6.4e-84 315.8 573 36.5
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 6.4e-84 315.8 574 38.3
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 8.3e-84 315.5 582 38.7
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 1.1e-83 315.1 573 38.0
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 1.1e-83 315.1 513 40.0
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 1.4e-83 314.7 583 36.7
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 1.9e-83 314.3 587 36.8
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 3.2e-83 313.5 573 36.3
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 3.2e-83 313.5 580 37.2
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 3.2e-83 313.5 574 38.2
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 4.1e-83 313.2 569 37.6
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 4.1e-83 313.2 521 38.8
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 7.1e-83 312.4 573 36.6
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 2.1e-82 310.8 574 38.3
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 2.7e-82 310.5 582 37.1
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 2.7e-82 310.5 582 36.9
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 2.7e-82 310.5 581 37.2
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 3.5e-82 310.1 569 37.4
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 3.5e-82 310.1 572 37.4
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 4.6e-82 309.7 574 38.2
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 4.6e-82 309.7 578 36.3
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 6.0e-82 309.3 563 38.2
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 6.0e-82 309.3 559 37.4
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 1.3e-81 308.1 573 36.3
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 2.3e-81 307.4 580 36.9
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 2.3e-81 307.4 572 36.9
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 3.0e-81 307.0 570 37.2
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 3.0e-81 307.0 562 37.9
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 3.9e-81 306.6 597 36.3
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 5.1e-81 306.2 572 37.1
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 1.1e-80 305.1 566 37.6
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 7.3e-80 302.4 578 36.7
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 7.3e-80 302.4 509 38.9
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 9.5e-80 302.0 510 36.5
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 1.2e-79 301.6 582 35.6
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 3.6e-79 300.1 558 36.2
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 1.5e-77 294.7 566 36.4
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 2.9e-76 290.4 535 37.4
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 4.9e-76 289.7 605 33.7
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 6.4e-76 289.3 563 35.5
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 1.9e-75 287.7 574 35.5
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 4.2e-75 286.6 559 35.8
Sopen06g031360 Solanum pennellii HOM05D004776 ORTHO05D005777 1.6e-74 284.6 328 48.8
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 6.6e-73 279.3 573 34.9
Pp3c13_8200 Physcomitrium patens HOM05D004776 ORTHO05D005777 1.9e-72 277.7 584 35.3
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 3.3e-72 276.9 468 38.0
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 4.3e-72 276.6 634 32.8
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 4.3e-72 276.6 411 40.1
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 1.2e-71 275.0 468 38.5
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 1.2e-71 275.0 553 35.6
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 1.6e-71 274.6 516 35.5
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 2.1e-71 274.2 473 37.6
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 2.1e-71 274.2 509 36.3
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 6.2e-71 272.7 456 39.0
MBI18_g10191_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.1e-70 271.9 277 53.4
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 2.4e-70 270.8 531 35.2
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 4.0e-70 270.0 509 36.7
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 2.9e-68 263.8 532 34.4
Gohir.A03G030900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 9.3e-67 258.8 328 44.5
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 1.6e-66 258.1 475 35.8
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 6.6e-65 252.7 575 33.2
Oeu029897.2 Olea europaea HOM05D004776 ORTHO05D005777 5.6e-64 249.6 382 41.4
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 2.1e-63 247.7 479 36.1
PGR094G0002 Punica granatum HOM05D004776 ORTHO05D005777 4.8e-63 246.5 242 55.8
PGR094G0004 Punica granatum HOM05D004776 ORTHO05D005777 4.8e-63 246.5 242 55.8
Actinidia14011 Actinidia chinensis HOM05D004776 ORTHO05D005777 4.9e-60 236.5 241 53.1
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 7.1e-59 232.6 543 32.6
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 1.2e-58 231.9 367 40.1
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 1.6e-58 231.5 478 35.8
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 1.1e-56 225.3 523 34.2
Aqoxy3G00574 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 1.3e-55 221.9 234 50.9
AL5G23500 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 1.4e-54 218.4 356 40.2
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 7.1e-51 206.1 227 52.9
Actinidia03704 Actinidia chinensis HOM05D004776 ORTHO05D005777 2.1e-50 204.5 193 56.5
MBI18_g43296_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.3e-47 195.3 283 43.1
Atru.chr3.3552 Acer truncatum HOM05D004776 ORTHO05D005777 2.7e-42 177.6 160 58.8
CBR_g19018 Chara braunii HOM05D000019 ORTHO05D000002 3.0e-41 174.1 244 42.2
AagrBONN_evm.TU.Sc2ySwM_228.5408 Anthoceros agrestis HOM05D004776 ORTHO05D005777 6.7e-41 172.9 506 32.4
Aa31LG4G14110 Aethionema arabicum HOM05D004776 ORTHO05D005777 3.1e-38 164.1 144 59.7
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 6.1e-34 149.8 420 30.2
CDE06G1539 Ceratophyllum demersum HOM05D004776 ORTHO05D005777 5.1e-33 146.7 192 49.0
FAN27G1933 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.8e-31 141.0 129 58.1
Gohir.1Z049525 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.1e-30 139.0 144 54.9
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 1.4e-30 138.7 364 31.3
Gohir.A13G232250 Gossypium hirsutum HOM05D004776 ORTHO05D005777 5.3e-30 136.7 144 54.2
Cpa.g.sc1.25 Carica papaya HOM05D004776 ORTHO05D005777 2.0e-29 134.8 130 56.9
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 1.3e-28 132.1 419 29.6
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 3.7e-23 114.0 176 40.9
MCO11G119 Micromonas commoda HOM05D004776 ORTHO05D005777 1.4e-22 112.1 254 36.2
Cre06.g277700 Chlamydomonas reinhardtii HOM05D004776 ORTHO05D005777 8.5e-20 102.8 258 31.4
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 1.9e-19 101.7 312 24.4
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 3.6e-18 97.4 400 26.5
Cfa026928 Carpinus fangiana HOM05D004776 ORTHO05D005777 9.7e-16 89.4 252 28.6
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.3e-15 89.0 338 26.3
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 6.3e-15 86.7 384 26.6
FAN05G3839 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.8e-12 77.4 88 50.0
MD00G1033800 Malus domestica HOM05D004776 ORTHO05D005777 3.2e-11 74.3 130 36.2
PRCOL_00000088 Prasinoderma coloniale HOM05D004776 ORTHO05D005777 5.5e-11 73.6 200 33.5
FAN07G0780 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.8e-09 68.6 93 44.1
Ca_01994_v3 Cicer arietinum L. HOM05D004776 ORTHO05D005777 3.7e-07 60.8 200 27.0
Gohir.A03G030950 Gossypium hirsutum HOM05D004776 ORTHO05D005777 5.3e-06 57.0 68 42.6


User provided reference genes

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