Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0124s0029 Marchantia polymorpha HOM05D007707 ORTHO05D009711 1.2e-46 189.5 97 100.0
Pp3c14_18830 Physcomitrium patens HOM05D007707 ORTHO05D009711 1.0e-13 80.1 85 47.1
MELO3C007931.2 Cucumis melo HOM05D007707 ORTHO05D009711 5.1e-13 77.8 57 59.6
QL06p051322 Quercus lobata HOM05D007707 ORTHO05D009711 8.7e-13 77.0 63 58.7
Glyma.01G163700 Glycine max HOM05D007707 ORTHO05D009711 1.5e-12 76.3 55 67.3
Glyma.11G079800 Glycine max HOM05D007707 ORTHO05D009711 1.9e-12 75.9 57 63.2
Phvul.002G105900 Phaseolus vulgaris HOM05D007707 ORTHO05D009711 1.9e-12 75.9 73 52.1
CANSAT01G1439 Cannabis sativa HOM05D007707 ORTHO05D009711 2.5e-12 75.5 63 54.0
CsaV3_6G047390 Cucumis sativus L. HOM05D007707 ORTHO05D009711 2.5e-12 75.5 57 57.9
Lj2g0020635 Lotus japonicus HOM05D007707 ORTHO05D009711 3.3e-12 75.1 50 64.0
Sp7g33690 Schrenkiella parvula HOM05D007707 ORTHO05D009711 3.3e-12 75.1 62 56.5
TWI73G0967 Tripterygium wilfordii HOM05D007707 ORTHO05D009711 3.3e-12 75.1 51 62.7
Cfa007014 Carpinus fangiana HOM05D007707 ORTHO05D009711 4.3e-12 74.7 49 63.3
AL7G15140 Arabidopsis lyrata HOM05D007707 ORTHO05D009711 5.7e-12 74.3 62 54.8
Prupe.7G172900 Prunus persica HOM05D007707 ORTHO05D009711 5.7e-12 74.3 66 53.0
Aa31LG6G12850 Aethionema arabicum HOM05D007707 ORTHO05D009711 7.4e-12 73.9 71 53.5
Medtr5g022760 Medicago truncatula HOM05D007707 ORTHO05D009711 7.4e-12 73.9 59 61.0
Psat2g152640 Pisum sativum HOM05D007707 ORTHO05D009711 7.4e-12 73.9 56 58.9
CiPaw.07G061600 Carya illinoinensis HOM05D007707 ORTHO05D009711 9.7e-12 73.6 48 64.6
FAN23G0755 Fragaria x ananassa HOM05D007707 ORTHO05D009711 1.3e-11 73.2 80 43.8
TPR.G10525 Trifolium pratense HOM05D007707 ORTHO05D009711 1.3e-11 73.2 56 60.7
AT4G35905 Arabidopsis thaliana HOM05D007707 ORTHO05D009711 1.6e-11 72.8 62 53.2
A03p63940 Brassica napus HOM05D007707 ORTHO05D009711 1.6e-11 72.8 55 54.5
BraA03t15463Z Brassica rapa HOM05D007707 ORTHO05D009711 1.6e-11 72.8 55 54.5
FAN19G0536 Fragaria x ananassa HOM05D007707 ORTHO05D009711 1.6e-11 72.8 70 48.6
Peaxi162Scf00635g00914 Petunia axillaris HOM05D007707 ORTHO05D009711 1.6e-11 72.8 60 53.3
Sed0012149 Sechium edule HOM05D007707 ORTHO05D009711 1.6e-11 72.8 46 69.6
BolC7t46567H Brassica oleracea HOM05D007707 ORTHO05D009711 2.2e-11 72.4 55 56.4
Thhalv10026722m.g Eutrema salsugineum HOM05D007707 ORTHO05D009711 2.2e-11 72.4 62 53.2
Manes.01G149600 Manihot esculenta HOM05D007707 ORTHO05D009711 2.2e-11 72.4 49 61.2
RcHm_v2.0_Chr2g0098761 Rosa chinensis HOM05D007707 ORTHO05D009711 2.2e-11 72.4 66 48.5
ClCG01G020510 Citrullus lanatus HOM05D007707 ORTHO05D009711 2.8e-11 72.0 57 54.4
Haze_03717 Corylus avellana HOM05D007707 ORTHO05D009711 2.8e-11 72.0 49 61.2
Gohir.A11G173000 Gossypium hirsutum HOM05D007707 ORTHO05D009711 2.8e-11 72.0 48 64.6
MD15G1241100 Malus domestica HOM05D007707 ORTHO05D009711 3.7e-11 71.6 69 50.7
CARHR244300 Cardamine hirsuta HOM05D007707 ORTHO05D009711 4.8e-11 71.2 62 53.2
Gohir.D11G180000 Gossypium hirsutum HOM05D007707 ORTHO05D009711 4.8e-11 71.2 46 67.4
Gorai.007G191900 Gossypium raimondii HOM05D007707 ORTHO05D009711 4.8e-11 71.2 46 67.4
Hma1.2p1_0869F.1_g230620 Hydrangea macrophylla HOM05D007707 ORTHO05D009711 4.8e-11 71.2 53 52.8
Sabra15G0015600 Salix brachista HOM05D007707 ORTHO05D009711 4.8e-11 71.2 53 60.4
arahy.Tifrunner.gnm1.ann1.LEB2TA Arachis hypogaea HOM05D007707 ORTHO05D009711 6.3e-11 70.9 51 58.8
arahy.Tifrunner.gnm1.ann1.URRP40 Arachis hypogaea HOM05D007707 ORTHO05D009711 6.3e-11 70.9 51 58.8
Dinv08562 Davidia involucrata HOM05D007707 ORTHO05D009711 1.1e-10 70.1 48 60.4
FAN28G2511 Fragaria x ananassa HOM05D007707 ORTHO05D009711 1.1e-10 70.1 63 49.2
THA.LOC104804277 Tarenaya hassleriana HOM05D007707 ORTHO05D009711 1.1e-10 70.1 51 58.8
MBI08_g05062_MAGBIO Magnolia biondii HOM05D007707 ORTHO05D009711 1.4e-10 69.7 64 48.4
Nitab4.5_0001561g0120 Nicotiana tabacum HOM05D007707 ORTHO05D009711 1.4e-10 69.7 57 49.1
EL10Ac6g15163 Beta vulgaris HOM05D007707 ORTHO05D009711 1.8e-10 69.3 48 60.4
Duzib147G0406 Durio zibethinus HOM05D007707 ORTHO05D009711 1.8e-10 69.3 48 62.5
Carub.0007s0432 Capsella rubella HOM05D007707 ORTHO05D009711 3.1e-10 68.6 62 51.6
ECA246G5216 Erigeron canadensis HOM05D007707 ORTHO05D009711 3.1e-10 68.6 48 58.3
Thecc.01G013500 Theobroma cacao HOM05D007707 ORTHO05D009711 3.1e-10 68.6 48 60.4
Lsat_1_v5_gn_3_71080 Lactuca sativa HOM05D007707 ORTHO05D009711 4.1e-10 68.2 46 63.0
SGA_v2.0_scaffold36G14291 Striga asiatica HOM05D007707 ORTHO05D009711 4.1e-10 68.2 75 44.0
Sc16g0001900 Simmondsia chinensis HOM05D007707 ORTHO05D009711 5.3e-10 67.8 66 42.4
CAN.G354.55 Capsicum annuum HOM05D007707 ORTHO05D009711 6.9e-10 67.4 51 56.9
Solyc03g033370.3 Solanum lycopersicum HOM05D007707 ORTHO05D009711 6.9e-10 67.4 61 45.9
COL.COLO4_22472 Corchorus olitorius HOM05D007707 ORTHO05D009711 9.0e-10 67.0 48 58.3
DCAR_011610 Daucus carota HOM05D007707 ORTHO05D009711 9.0e-10 67.0 63 42.9
Ah.02g123290 Amaranthus hybridus HOM05D007707 ORTHO05D009711 2.0e-09 65.9 46 58.7
Lalb_Chr09g0321541 Lupinus albus HOM05D007707 ORTHO05D009711 2.0e-09 65.9 58 51.7
Sopen03g006140 Solanum pennellii HOM05D007707 ORTHO05D009711 2.0e-09 65.9 51 54.9
Ciclev10026827m.g Citrus clementina HOM05D007707 ORTHO05D009711 2.6e-09 65.5 47 59.6
vmacro22198 Vaccinium macrocarpon HOM05D007707 ORTHO05D009711 2.6e-09 65.5 48 56.2
Rhsim10G0207600 Rhododendron simsii HOM05D007707 ORTHO05D009711 3.4e-09 65.1 48 56.2
Migut.J01748 Erythranthe guttata HOM05D007707 ORTHO05D009711 4.5e-09 64.7 57 50.9
Nitab4.5_0001685g0100 Nicotiana tabacum HOM05D007707 ORTHO05D009711 4.5e-09 64.7 50 52.0
PGR102G1942 Punica granatum HOM05D007707 ORTHO05D009711 5.9e-09 64.3 66 45.5
Zm00001eb222710 Zea mays HOM05D007707 ORTHO05D009711 1.0e-08 63.5 53 54.7
Oeu056393.1 Olea europaea HOM05D007707 ORTHO05D009711 1.3e-08 63.2 76 43.4
Os10g0438700 Oryza sativa ssp. japonica HOM05D007707 ORTHO05D009711 1.3e-08 63.2 46 58.7
AUR62018017 Chenopodium quinoa HOM05D007707 ORTHO05D009711 1.7e-08 62.8 48 54.2
SEGI_22054 Sequoiadendron giganteum HOM05D007707 ORTHO05D009711 1.7e-08 62.8 50 52.0
CDE05G2854 Ceratophyllum demersum HOM05D007707 ORTHO05D009711 2.2e-08 62.4 59 52.5
Cc07_g11150 Coffea canephora HOM05D007707 ORTHO05D009711 2.2e-08 62.4 63 46.0
Nn6g31960 Nelumbo nucifera HOM05D007707 ORTHO05D009711 3.8e-08 61.6 56 48.2
arahy.Tifrunner.gnm1.ann1.04LXIS Arachis hypogaea HOM05D000001 ORTHO05D009700 1.1e-07 60.1 46 58.7
ATR0180G024 Amborella trichopoda HOM05D007707 ORTHO05D009711 1.9e-07 59.3 48 54.2
BcaNung05054 Brassica carinata HOM05D007707 ORTHO05D009711 5.5e-07 57.8 63 46.0
HPP92_020736 Vanilla planifolia HOM05D007707 ORTHO05D009711 4.6e-06 54.7 53 54.7


User provided reference genes

Program Settings