Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0124s0018 Marchantia polymorpha HOM05D006152 ORTHO05D008137 1.6e-230 802.4 397 100.0
Glyma.13G155700 Glycine max HOM05D006152 ORTHO05D008137 1.6e-84 317.4 336 50.0
Lalb_Chr12g0198561 Lupinus albus HOM05D006152 ORTHO05D008137 1.0e-83 314.7 353 49.0
Thecc.09G035000 Theobroma cacao HOM05D006152 ORTHO05D008137 3.0e-83 313.2 334 48.5
Migut.K00351 Erythranthe guttata HOM05D006152 ORTHO05D008137 3.9e-83 312.8 361 46.8
MSTRG.26302 Avicennia marina HOM05D006152 ORTHO05D008137 9.5e-82 308.1 324 48.8
Prupe.7G259100 Prunus persica HOM05D006152 ORTHO05D008137 1.2e-81 307.8 337 49.3
Phvul.003G158400 Phaseolus vulgaris HOM05D006152 ORTHO05D008137 2.1e-81 307.0 328 49.4
Medtr4g131670 Medicago truncatula HOM05D006152 ORTHO05D008137 2.8e-81 306.6 324 48.5
DCAR_019366 Daucus carota HOM05D006152 ORTHO05D008137 4.7e-81 305.8 324 51.2
TPR.G6509 Trifolium pratense HOM05D006152 ORTHO05D008137 4.7e-81 305.8 327 48.0
HanXRQChr10g0314551 Helianthus annuus HOM05D006152 ORTHO05D008137 8.1e-81 305.1 324 49.1
Eucgr.C00382 Eucalyptus grandis HOM05D006152 ORTHO05D008137 1.1e-80 304.7 353 47.6
Ciclev10008799m.g Citrus clementina HOM05D006152 ORTHO05D008137 1.4e-80 304.3 337 47.8
Gohir.D05G052200 Gossypium hirsutum HOM05D006152 ORTHO05D008137 1.4e-80 304.3 331 49.5
THA.LOC104811841 Tarenaya hassleriana HOM05D006152 ORTHO05D008137 2.3e-80 303.5 370 46.2
TPR.G37046 Trifolium pratense HOM05D006152 ORTHO05D008137 3.1e-80 303.1 331 48.6
Actinidia38346 Actinidia chinensis HOM05D006152 ORTHO05D008137 5.2e-80 302.4 357 47.6
Manes.06G038100 Manihot esculenta HOM05D006152 ORTHO05D008137 1.2e-79 301.2 341 47.8
FvH4_1g01320 Fragaria vesca HOM05D006152 ORTHO05D008137 1.5e-79 300.8 334 49.1
Os06g0182400 Oryza sativa ssp. japonica HOM05D006152 ORTHO05D008137 2.0e-79 300.4 330 46.7
Lj4g0021784 Lotus japonicus HOM05D006152 ORTHO05D008137 7.6e-79 298.5 331 49.8
Hund21620 Selenicereus undatus HOM05D006152 ORTHO05D008137 9.9e-79 298.1 324 49.1
CiPaw.16G115700 Carya illinoinensis HOM05D006152 ORTHO05D008137 1.3e-78 297.7 357 44.5
Pp3c26_6540 Physcomitrium patens HOM05D006152 ORTHO05D008137 1.3e-78 297.7 331 48.3
TWI32G1323 Tripterygium wilfordii HOM05D006152 ORTHO05D008137 2.2e-78 297.0 324 46.9
AT5G58200 Arabidopsis thaliana HOM05D006152 ORTHO05D008137 4.9e-78 295.8 328 46.6
Carub.0008s1874 Capsella rubella HOM05D006152 ORTHO05D008137 4.9e-78 295.8 328 48.2
Gorai.009G054000 Gossypium raimondii HOM05D006152 ORTHO05D008137 4.9e-78 295.8 342 48.0
AL8G34300 Arabidopsis lyrata HOM05D006152 ORTHO05D008137 6.4e-78 295.4 328 47.6
Oeu043492.1 Olea europaea HOM05D006152 ORTHO05D008137 8.3e-78 295.0 362 44.5
RcHm_v2.0_Chr2g0086151 Rosa chinensis HOM05D006152 ORTHO05D008137 8.3e-78 295.0 338 47.9
CsaV3_2G003440 Cucumis sativus L. HOM05D006152 ORTHO05D008137 1.4e-77 294.3 338 47.3
Lsat_1_v5_gn_5_90820 Lactuca sativa HOM05D006152 ORTHO05D008137 4.1e-77 292.7 328 48.2
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 5.4e-77 292.4 322 47.8
Sp6g19860 Schrenkiella parvula HOM05D006152 ORTHO05D008137 5.4e-77 292.4 321 48.0
Nn2g12295 Nelumbo nucifera HOM05D006152 ORTHO05D008137 7.1e-77 292.0 362 45.3
SEGI_04227 Sequoiadendron giganteum HOM05D006152 ORTHO05D008137 6.0e-76 288.9 319 47.0
Sed0008154 Sechium edule HOM05D006152 ORTHO05D008137 7.8e-76 288.5 328 47.6
A02p07870 Brassica napus HOM05D006152 ORTHO05D008137 1.0e-75 288.1 328 47.0
Aqoxy1G03917 Aquilegia oxysepala HOM05D006152 ORTHO05D008137 1.7e-75 287.3 322 47.2
Solyc07g005120.3 Solanum lycopersicum HOM05D006152 ORTHO05D008137 1.7e-75 287.3 323 46.1
Sopen07g001260 Solanum pennellii HOM05D006152 ORTHO05D008137 1.7e-75 287.3 323 46.4
C02p13510 Brassica napus HOM05D006152 ORTHO05D008137 3.0e-75 286.6 328 46.3
MD02G1011000 Malus domestica HOM05D006152 ORTHO05D008137 3.0e-75 286.6 331 45.3
arahy.Tifrunner.gnm1.ann1.QAR9AW Arachis hypogaea HOM05D006152 ORTHO05D008137 5.1e-75 285.8 350 46.3
Thhalv10014084m.g Eutrema salsugineum HOM05D006152 ORTHO05D008137 5.1e-75 285.8 328 47.6
AagrBONN_evm.TU.Sc2ySwM_228.5740 Anthoceros agrestis HOM05D006152 ORTHO05D008137 8.6e-75 285.0 336 49.1
Rhsim01G0042700 Rhododendron simsii HOM05D006152 ORTHO05D008137 1.5e-74 284.3 373 43.4
SGA_v2.0_scaffold387G50519 Striga asiatica HOM05D006152 ORTHO05D008137 4.3e-74 282.7 411 40.6
BcaB05g22408 Brassica carinata HOM05D006152 ORTHO05D008137 7.3e-74 282.0 332 46.1
BcaC03g14112 Brassica carinata HOM05D006152 ORTHO05D008137 1.2e-73 281.2 339 45.4
ECA234G4022 Erigeron canadensis HOM05D000464 ORTHO05D000408 4.7e-73 279.3 251 54.6
PGR142G2956 Punica granatum HOM05D006152 ORTHO05D008137 8.1e-73 278.5 332 43.7
BraA02t05860Z Brassica rapa HOM05D006152 ORTHO05D008137 1.1e-72 278.1 342 45.0
CARHR272000 Cardamine hirsuta HOM05D006152 ORTHO05D008137 8.9e-72 275.0 314 49.7
BolC2t07463H Brassica oleracea HOM05D006152 ORTHO05D008137 1.2e-71 274.6 339 44.5
CSS0018805 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 1.5e-71 274.2 304 49.3
Cc06_g15390 Coffea canephora HOM05D006152 ORTHO05D008137 2.0e-71 273.9 346 43.4
Hma1.2p1_0222F.1_g093200 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 2.0e-71 273.9 251 54.2
AUR62010759 Chenopodium quinoa HOM05D001472 ORTHO05D002655 3.4e-71 273.1 349 42.4
Rhsim01G0046600 Rhododendron simsii HOM05D006152 ORTHO05D008137 7.6e-71 271.9 356 44.1
SalBow5G3728 Salvia bowleyana HOM05D001472 ORTHO05D002655 7.6e-71 271.9 300 49.3
arahy.Tifrunner.gnm1.ann1.L77CZK Arachis hypogaea HOM05D006152 ORTHO05D008137 3.8e-70 269.6 324 46.3
QL02p092448 Quercus lobata HOM05D006152 ORTHO05D008137 6.4e-70 268.9 410 37.8
PSO384G3563 Papaver somniferum HOM05D006152 ORTHO05D008137 1.1e-69 268.1 331 45.6
PSO384G4708 Papaver somniferum HOM05D006152 ORTHO05D008137 1.1e-69 268.1 331 45.6
Sabra06G0143900 Salix brachista HOM05D006152 ORTHO05D008137 1.4e-69 267.7 398 39.4
Sabra06G0145100 Salix brachista HOM05D006152 ORTHO05D008137 1.4e-69 267.7 398 39.4
FAN23G2003 Fragaria x ananassa HOM05D006152 ORTHO05D008137 3.2e-69 266.5 341 44.3
AUR62041375 Chenopodium quinoa HOM05D001472 ORTHO05D002655 5.4e-69 265.8 315 46.7
CSS0025720 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 9.3e-69 265.0 326 46.0
MD15G1156000 Malus domestica HOM05D006152 ORTHO05D008137 3.5e-68 263.1 407 38.3
SMO347G0290 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 6.6e-67 258.8 322 43.8
Gohir.A05G050600 Gossypium hirsutum HOM05D006152 ORTHO05D008137 5.6e-66 255.8 289 48.4
Ah.04g162170 Amaranthus hybridus HOM05D006152 ORTHO05D008137 2.8e-65 253.4 324 45.1
Lj7A453G70 Lonicera japonica HOM05D006152 ORTHO05D008137 8.1e-65 251.9 311 44.4
Peaxi162Scf00347g00517 Petunia axillaris HOM05D006152 ORTHO05D008137 1.1e-64 251.5 401 38.2
Sc14g0000030 Simmondsia chinensis HOM05D006152 ORTHO05D008137 1.1e-64 251.5 294 45.9
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 4.0e-64 249.6 294 44.9
Haze_19246 Corylus avellana HOM05D006152 ORTHO05D008137 6.9e-64 248.8 345 42.6
vmacro13046 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 9.0e-64 248.4 317 43.5
vmacro23231 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 9.0e-64 248.4 317 43.5
Duzib168G0440 Durio zibethinus HOM05D006152 ORTHO05D008137 1.2e-63 248.1 330 42.7
Nitab4.5_0003856g0050 Nicotiana tabacum HOM05D006152 ORTHO05D008137 5.4e-61 239.2 343 40.2
PSO339G6042 Papaver somniferum HOM05D006152 ORTHO05D008137 7.1e-61 238.8 290 45.5
ATR0184G013 Amborella trichopoda HOM05D006152 ORTHO05D008137 9.3e-61 238.4 291 44.7
CDE05G0292 Ceratophyllum demersum HOM05D006152 ORTHO05D008137 1.0e-59 235.0 324 43.8
SMO356G0422 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.1e-58 231.5 319 41.7
SMO169G0164 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.6e-57 227.6 325 39.1
Cpa.g.sc46.115 Carica papaya HOM05D006152 ORTHO05D008137 1.4e-56 224.6 322 42.9
AUR62019760 Chenopodium quinoa HOM05D001472 ORTHO05D002655 5.3e-56 222.6 289 43.3
Dinv42894 Davidia involucrata HOM05D006152 ORTHO05D008137 6.9e-56 222.2 220 50.9
TAR383G0013 Trochodendron aralioides HOM05D006152 ORTHO05D008137 2.2e-54 217.2 225 50.7
VMungo1215G1041 Vigna mungo HOM05D006152 ORTHO05D008137 4.9e-54 216.1 245 47.3
Psat4g007440 Pisum sativum HOM05D006152 ORTHO05D008137 5.4e-53 212.6 239 47.7
Hma1.2p1_0222F.1_g093210 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 9.3e-53 211.8 243 47.3
CARHR032820 Cardamine hirsuta HOM05D006152 ORTHO05D008137 3.9e-51 206.5 326 39.0
QL02p092408 Quercus lobata HOM05D006152 ORTHO05D008137 5.1e-51 206.1 237 46.4
MBI15_g30906_MAGBIO Magnolia biondii HOM05D006152 ORTHO05D008137 6.7e-51 205.7 235 47.7
MELO3C004453.2 Cucumis melo HOM05D006152 ORTHO05D008137 1.1e-50 204.9 245 44.5
EL10Ac8g18846 Beta vulgaris HOM05D006152 ORTHO05D008137 5.6e-50 202.6 338 37.9
COL.COLO4_18762 Corchorus olitorius HOM05D006152 ORTHO05D008137 9.6e-50 201.8 233 47.2
CAN.G520.14 Capsicum annuum HOM05D006152 ORTHO05D008137 4.9e-46 189.5 237 43.0
Nitab4.5_0001094g0060 Nicotiana tabacum HOM05D006152 ORTHO05D008137 4.2e-45 186.4 343 35.6
Cre17.g729650 Chlamydomonas reinhardtii HOM05D006152 ORTHO05D008137 7.1e-45 185.7 292 38.0
AUR62017200 Chenopodium quinoa HOM05D006152 ORTHO05D008137 7.9e-44 182.2 243 41.2
HPP92_017513 Vanilla planifolia HOM05D006152 ORTHO05D008137 1.8e-43 181.0 198 47.0
Potri.006G188200 Populus trichocarpa HOM05D006152 ORTHO05D008137 3.0e-43 180.3 188 50.0
PGSC0003DMG400003198 Solanum tuberosum HOM05D006152 ORTHO05D008137 1.9e-42 177.6 222 43.7
MD00G1188400 Malus domestica HOM05D006152 ORTHO05D008137 1.2e-39 168.3 155 52.9
AUR62002687 Chenopodium quinoa HOM05D006152 ORTHO05D008137 2.9e-38 163.7 267 38.6
Migut.K01256 Erythranthe guttata HOM05D006152 ORTHO05D008137 2.9e-38 163.7 146 54.8
ClCG11G003570 Citrullus lanatus HOM05D006152 ORTHO05D008137 8.7e-35 152.1 187 44.9
GSVIVG01001075001 Vitis vinifera HOM05D006152 ORTHO05D008137 8.7e-35 152.1 332 34.0
Dinv43207 Davidia involucrata HOM05D006152 ORTHO05D008137 1.1e-34 151.8 156 49.4
Ca_21103_v3 Cicer arietinum L. HOM05D006152 ORTHO05D008137 1.6e-33 147.9 230 40.0
Zm00001eb374780 Zea mays HOM05D006152 ORTHO05D008137 1.8e-32 144.4 128 57.0
AUR62038836 Chenopodium quinoa HOM05D001472 ORTHO05D008137 1.8e-24 117.9 186 37.6
FAN28G1911 Fragaria x ananassa HOM05D006152 ORTHO05D008137 4.1e-24 116.7 150 44.0
FvH4_1g01360 Fragaria vesca HOM05D006152 ORTHO05D045810 5.7e-18 96.3 93 52.7
GSVIVG01003719001 Vitis vinifera HOM05D006152 ORTHO05D008137 3.7e-17 93.6 89 48.3
PGR142G1207 Punica granatum HOM05D006152 ORTHO05D008137 4.8e-17 93.2 72 56.9
FvH4_1g01380 Fragaria vesca HOM05D006152 ORTHO05D008137 2.4e-16 90.9 106 42.5
Oeu028814.1 Olea europaea HOM05D006152 ORTHO05D008137 1.2e-12 78.6 152 33.6
Sc04g0006660 Simmondsia chinensis HOM05D006152 ORTHO05D008137 3.3e-10 70.5 79 44.3
SMO356G0211 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 5.7e-10 69.7 66 50.0
TAR383G0486 Trochodendron aralioides HOM05D006152 ORTHO05D008137 2.2e-09 67.8 109 36.7
MD00G1188300 Malus domestica HOM05D006152 ORTHO05D029506 1.1e-08 65.5 65 50.8
AUR62029567 Chenopodium quinoa HOM05D001472 ORTHO05D015242 5.9e-07 59.7 77 39.0
Sc08g0005240 Simmondsia chinensis HOM05D006152 ORTHO05D008137 1.7e-06 58.2 65 47.7


User provided reference genes

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