Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 1.3e-302 1042.3 541 100.0
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 1.0e-147 527.7 485 55.7
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 8.0e-140 501.5 534 51.3
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 1.0e-126 458.0 516 48.8
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 1.8e-123 447.2 514 48.4
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 4.0e-123 446.0 514 48.1
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 2.0e-122 443.7 448 52.7
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 2.6e-122 443.4 523 47.4
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 9.8e-122 441.4 530 47.2
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 1.3e-121 441.0 522 45.8
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 1.7e-121 440.7 518 46.9
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 2.9e-121 439.9 512 47.1
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 2.9e-121 439.9 516 46.7
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 8.3e-121 438.3 515 46.6
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.1e-120 438.0 530 47.4
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 5.4e-120 435.6 518 47.1
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 1.2e-119 434.5 533 45.8
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 1.6e-119 434.1 509 47.0
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 2.0e-119 433.7 511 47.2
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 2.0e-119 433.7 511 46.6
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 7.8e-119 431.8 540 45.4
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 1.0e-118 431.4 510 45.9
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 1.0e-118 431.4 517 45.8
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 2.3e-118 430.3 515 45.6
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 3.0e-118 429.9 515 45.0
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 1.1e-117 427.9 516 46.1
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 2.5e-117 426.8 504 47.6
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 2.5e-117 426.8 516 46.1
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 5.6e-117 425.6 511 47.6
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 5.6e-117 425.6 526 45.1
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 7.3e-117 425.2 516 44.8
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 1.2e-116 424.5 516 45.0
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 1.6e-116 424.1 511 47.4
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 1.6e-116 424.1 526 45.4
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 1.6e-116 424.1 516 45.2
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 2.8e-116 423.3 515 47.0
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 1.1e-115 421.4 517 45.6
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 1.4e-115 421.0 511 46.4
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 1.4e-115 421.0 524 45.2
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 1.8e-115 420.6 518 46.3
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 1.8e-115 420.6 516 44.4
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 1.8e-115 420.6 515 46.6
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 2.3e-115 420.2 511 47.2
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 3.1e-115 419.9 500 46.0
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 4.0e-115 419.5 529 45.6
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 5.2e-115 419.1 529 45.6
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 1.2e-114 417.9 515 46.8
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 1.5e-114 417.5 517 45.3
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 1.5e-114 417.5 477 48.0
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 2.6e-114 416.8 514 45.1
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 3.4e-114 416.4 516 44.4
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 4.4e-114 416.0 544 44.5
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 3.7e-113 412.9 508 46.5
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 3.7e-113 412.9 477 47.4
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 8.3e-113 411.8 503 46.1
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 8.3e-113 411.8 508 46.1
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 1.1e-112 411.4 519 44.1
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 2.4e-112 410.2 477 46.5
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 2.1e-111 407.1 494 46.6
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 3.5e-111 406.4 518 44.4
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 1.3e-110 404.4 459 48.6
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 8.6e-110 401.7 587 39.7
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 1.5e-109 401.0 527 43.5
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 1.9e-109 400.6 518 44.2
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 4.3e-109 399.4 527 43.6
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 2.1e-108 397.1 515 44.3
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 8.1e-108 395.2 517 44.1
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 1.4e-107 394.4 506 45.1
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 1.4e-107 394.4 475 46.7
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 2.6e-106 390.2 514 42.2
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 1.7e-105 387.5 535 42.8
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 5.4e-104 382.5 452 46.5
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 7.1e-104 382.1 446 48.9
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 4.6e-103 379.4 459 45.8
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 7.8e-103 378.6 431 48.7
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 5.1e-102 375.9 424 48.3
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 2.1e-100 370.5 545 41.7
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 2.8e-100 370.2 416 48.6
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 6.2e-100 369.0 518 42.1
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 1.1e-99 368.2 406 48.0
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 3.4e-98 363.2 527 41.0
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 7.6e-98 362.1 520 40.4
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 7.6e-98 362.1 426 46.7
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 1.3e-97 361.3 530 39.6
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 2.2e-97 360.5 524 40.6
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 2.9e-97 360.1 436 45.6
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 3.8e-97 359.8 516 41.9
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.1e-96 358.2 550 40.0
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 1.1e-96 358.2 422 47.6
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 5.4e-96 355.9 508 41.3
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 6.0e-95 352.4 396 49.7
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 1.3e-94 351.3 510 40.8
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 3.0e-94 350.1 467 45.0
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 5.6e-93 345.9 439 46.5
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 5.6e-93 345.9 494 41.9
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 3.2e-88 330.1 454 43.2
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.3e-86 324.7 434 44.0
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 6.2e-84 315.8 430 42.8
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 1.8e-83 314.3 569 36.7
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 1.2e-82 311.6 503 38.4
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 4.2e-80 303.1 433 40.6
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 2.1e-79 300.8 468 41.0
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 6.0e-79 299.3 568 37.1
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 4.3e-77 293.1 468 40.8
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 2.4e-75 287.3 377 45.1
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 1.2e-74 285.0 411 41.6
Nitab4.5_0002764g0030 Nicotiana tabacum HOM05D004498 ORTHO05D005300 2.2e-73 280.8 427 40.3
Cre11.g467726 Chlamydomonas reinhardtii HOM05D004498 ORTHO05D005300 3.5e-71 273.5 670 32.5
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.3e-70 271.6 290 51.7
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 8.5e-65 252.3 307 45.6
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 1.1e-64 251.9 400 37.5
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 1.1e-59 235.3 330 42.1
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 3.1e-59 233.8 253 47.4
SEGI_20056 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.2e-52 211.1 201 56.2
MCO14G174 Micromonas commoda HOM05D004498 ORTHO05D005300 3.8e-49 200.3 521 31.7
Nitab4.5_0000818g0240 Nicotiana tabacum HOM05D004498 ORTHO05D005300 4.2e-48 196.8 291 42.6
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 2.7e-47 194.1 231 45.5
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 3.9e-46 190.3 202 53.0
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 3.7e-44 183.7 385 35.8
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 5.3e-43 179.9 182 52.2
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 1.2e-42 178.7 200 47.0
PRCOL_00001376 Prasinoderma coloniale HOM05D004498 ORTHO05D005300 4.1e-35 153.7 533 29.5
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 5.3e-35 153.3 219 43.8
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 7.0e-35 152.9 190 49.5
Nitab4.5_0003647g0080 Nicotiana tabacum HOM05D004498 ORTHO05D005300 5.0e-33 146.7 466 28.3
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.5e-32 145.2 161 47.2
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.5e-32 145.2 161 47.2
SEGI_28281 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.7e-31 141.0 137 52.6
Sabra03G0074300 Salix brachista HOM05D004498 ORTHO05D005300 8.0e-23 112.8 163 39.3
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 3.0e-22 110.9 151 45.7
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 3.0e-22 110.9 96 59.4
arahy.Tifrunner.gnm1.ann1.BI5KXL Arachis hypogaea HOM05D004498 ORTHO05D005300 5.2e-22 110.2 149 40.9
Os07g0486100 Oryza sativa ssp. japonica HOM05D004498 ORTHO05D005300 1.1e-19 102.4 178 36.0
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 3.0e-14 84.3 106 49.1
SGA_v2.0_scaffold4035G54420 Striga asiatica HOM05D004498 ORTHO05D005300 5.2e-14 83.6 149 37.6
CSS0024530 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 2.9e-12 77.8 86 45.3
FvH4_1g27600 Fragaria vesca HOM05D004498 ORTHO05D005300 1.4e-11 75.5 89 47.2
PGR142G0681 Punica granatum HOM05D004498 ORTHO05D005300 1.3e-09 68.9 78 50.0
Prupe.6G034800 Prunus persica HOM05D004498 ORTHO05D005300 1.5e-08 65.5 54 59.3
Potri.003G107501 Populus trichocarpa HOM05D004498 ORTHO05D005300 1.9e-08 65.1 65 50.8
Nitab4.5_0002764g0040 Nicotiana tabacum HOM05D004498 ORTHO05D005300 5.6e-08 63.5 108 36.1
SalBow8G0163 Salvia bowleyana HOM05D004498 ORTHO05D005300 5.6e-08 63.5 62 51.6
SalBow8G4260 Salvia bowleyana HOM05D004498 ORTHO05D005300 5.6e-08 63.5 62 51.6
AagrBONN_evm.TU.Sc2ySwM_117.318 Anthoceros agrestis HOM05D004498 ORTHO05D005300 2.1e-07 61.6 113 37.2
AagrBONN_evm.TU.Sc2ySwM_344.4951 Anthoceros agrestis HOM05D004498 ORTHO05D005300 6.2e-07 60.1 107 37.4
Nn1g09635 Nelumbo nucifera HOM05D004498 ORTHO05D005300 1.4e-06 58.9 95 38.9
PGSC0003DMG402007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 1.8e-06 58.5 90 36.7
vmacro22806 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 8.9e-06 56.2 80 41.2


User provided reference genes

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