Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0123s0013 Marchantia polymorpha HOM05D006117 ORTHO05D007996 8.5e-279 963.0 474 100.0
Pp3c2_14510 Physcomitrium patens HOM05D006117 ORTHO05D007996 4.6e-131 472.2 407 55.3
AagrBONN_evm.TU.Sc2ySwM_344.1796 Anthoceros agrestis HOM05D006117 ORTHO05D007996 2.8e-128 463.0 396 56.6
SMO347G0464 Selaginella moellendorffii HOM05D006117 ORTHO05D007996 3.6e-128 462.6 411 54.7
SEGI_31593 Sequoiadendron giganteum HOM05D006117 ORTHO05D007996 1.7e-122 443.7 384 53.4
MBI16_g39105_MAGBIO Magnolia biondii HOM05D006117 ORTHO05D007996 3.9e-122 442.6 385 53.8
Lj4C73T15 Lonicera japonica HOM05D006117 ORTHO05D007996 4.4e-118 429.1 392 53.3
QL12p038374 Quercus lobata HOM05D006117 ORTHO05D007996 4.4e-118 429.1 392 52.6
TWI12G0297 Tripterygium wilfordii HOM05D006117 ORTHO05D007996 4.4e-118 429.1 387 54.0
Sabra14G0008600 Salix brachista HOM05D006117 ORTHO05D007996 5.8e-118 428.7 390 53.3
Ciclev10001149m.g Citrus clementina HOM05D006117 ORTHO05D007996 7.5e-118 428.3 396 54.0
TAR628G0216 Trochodendron aralioides HOM05D006117 ORTHO05D007996 7.5e-118 428.3 392 52.0
CDE07G1235 Ceratophyllum demersum HOM05D006117 ORTHO05D007996 4.9e-117 425.6 388 51.8
Hund05287 Selenicereus undatus HOM05D006117 ORTHO05D007996 2.4e-116 423.3 393 52.4
FvH4_2g32820 Fragaria vesca HOM05D006117 ORTHO05D007996 7.1e-116 421.8 392 51.5
Cfa013754 Carpinus fangiana HOM05D006117 ORTHO05D007996 9.2e-116 421.4 393 52.2
FAN15G1845 Fragaria x ananassa HOM05D006117 ORTHO05D007996 1.6e-115 420.6 392 51.5
FAN24G1443 Fragaria x ananassa HOM05D006117 ORTHO05D007996 1.6e-115 420.6 392 51.3
Prupe.1G420700 Prunus persica HOM05D006117 ORTHO05D007996 2.1e-115 420.2 392 53.3
FAN20G1172 Fragaria x ananassa HOM05D006117 ORTHO05D007996 3.5e-115 419.5 392 51.3
Sc15g0005470 Simmondsia chinensis HOM05D006117 ORTHO05D007996 3.5e-115 419.5 393 50.9
Glyma.06G047700 Glycine max HOM05D006117 ORTHO05D007996 4.6e-115 419.1 392 51.5
Actinidia10214 Actinidia chinensis HOM05D006117 ORTHO05D007996 7.8e-115 418.3 397 51.6
ECA232G2767 Erigeron canadensis HOM05D006117 ORTHO05D007996 1.3e-114 417.5 417 49.9
Potri.014G014400 Populus trichocarpa HOM05D006117 ORTHO05D007996 1.3e-114 417.5 390 52.1
Lsat_1_v5_gn_9_81040 Lactuca sativa HOM05D006117 ORTHO05D007996 3.0e-114 416.4 416 49.5
Aqoxy6G02537 Aquilegia oxysepala HOM05D006117 ORTHO05D007996 3.9e-114 416.0 389 51.4
AUR62037469 Chenopodium quinoa HOM05D006117 ORTHO05D007996 1.5e-113 414.1 398 50.3
RcHm_v2.0_Chr6g0309881 Rosa chinensis HOM05D006117 ORTHO05D007996 1.5e-113 414.1 392 50.8
FAN27G0951 Fragaria x ananassa HOM05D006117 ORTHO05D007996 2.5e-113 413.3 393 50.9
CANSAT25G2369 Cannabis sativa HOM05D006117 ORTHO05D007996 4.3e-113 412.5 394 52.3
AUR62034997 Chenopodium quinoa HOM05D006117 ORTHO05D007996 4.3e-113 412.5 400 49.8
Gorai.009G221300 Gossypium raimondii HOM05D006117 ORTHO05D007996 5.6e-113 412.1 393 51.4
Gohir.A05G211300 Gossypium hirsutum HOM05D006117 ORTHO05D007996 7.3e-113 411.8 392 52.0
DCAR_009868 Daucus carota HOM05D006117 ORTHO05D007996 1.2e-112 411.0 394 50.8
Gohir.D05G214600 Gossypium hirsutum HOM05D006117 ORTHO05D007996 1.6e-112 410.6 393 51.7
COL.COLO4_28476 Corchorus olitorius HOM05D006117 ORTHO05D007996 2.1e-112 410.2 403 51.6
HanXRQChr10g0279141 Helianthus annuus HOM05D006117 ORTHO05D007996 2.8e-112 409.8 392 51.3
Lj1g0000026 Lotus japonicus HOM05D006117 ORTHO05D007996 6.2e-112 408.7 401 51.6
Thecc.08G085800 Theobroma cacao HOM05D006117 ORTHO05D007996 6.2e-112 408.7 392 52.0
CiPaw.08G051200 Carya illinoinensis HOM05D006117 ORTHO05D007996 1.1e-111 407.9 393 50.4
Ca_15895_v3 Cicer arietinum L. HOM05D006117 ORTHO05D007996 1.8e-111 407.1 400 50.2
Psat5g038440 Pisum sativum HOM05D006117 ORTHO05D007996 2.4e-111 406.8 401 50.1
VMungo1309G1718 Vigna mungo HOM05D006117 ORTHO05D007996 4.0e-111 406.0 392 50.5
Cc10_g05140 Coffea canephora HOM05D006117 ORTHO05D007996 5.2e-111 405.6 392 51.3
Phvul.009G073200 Phaseolus vulgaris HOM05D006117 ORTHO05D007996 5.2e-111 405.6 397 50.6
Nn5g30637 Nelumbo nucifera HOM05D006117 ORTHO05D007996 6.8e-111 405.2 397 51.4
Oeu047247.2 Olea europaea HOM05D006117 ORTHO05D007996 6.8e-111 405.2 392 50.3
Peaxi162Scf00028g00273 Petunia axillaris HOM05D006117 ORTHO05D007996 6.8e-111 405.2 392 51.5
Ah.05g167020 Amaranthus hybridus HOM05D006117 ORTHO05D007996 8.9e-111 404.8 397 48.4
Medtr3g103300 Medicago truncatula HOM05D006117 ORTHO05D007996 2.6e-110 403.3 406 49.3
EL10Ac1g02358 Beta vulgaris HOM05D006117 ORTHO05D007996 4.4e-110 402.5 400 48.8
Nitab4.5_0005915g0010 Nicotiana tabacum HOM05D006117 ORTHO05D007996 4.4e-110 402.5 386 51.3
PGR031G1695 Punica granatum HOM05D006117 ORTHO05D007996 5.8e-110 402.1 400 50.5
Duzib093G0384 Durio zibethinus HOM05D006117 ORTHO05D007996 1.7e-109 400.6 394 52.3
PSO675G0076 Papaver somniferum HOM05D006117 ORTHO05D007996 2.9e-109 399.8 390 50.3
Lalb_Chr08g0245231 Lupinus albus HOM05D006117 ORTHO05D007996 5.4e-108 395.6 399 48.6
THA.LOC104807059 Tarenaya hassleriana HOM05D006117 ORTHO05D007996 5.4e-108 395.6 391 50.6
Rhsim06G0063800 Rhododendron simsii HOM05D006117 ORTHO05D007996 9.2e-108 394.8 398 49.2
Eucgr.F02231 Eucalyptus grandis HOM05D006117 ORTHO05D007996 1.6e-107 394.0 394 50.5
SalBow7G4164 Salvia bowleyana HOM05D006117 ORTHO05D007996 1.6e-107 394.0 394 49.2
CSS0008179 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 2.1e-107 393.7 389 50.4
CSS0023541 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 2.1e-107 393.7 389 50.4
MSTRG.1022 Avicennia marina HOM05D006117 ORTHO05D007996 3.5e-107 392.9 393 48.6
CSS0025391 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 3.5e-107 392.9 392 49.7
CSS0015427 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 6.0e-107 392.1 392 49.7
unitig_26.g9869 Utricularia gibba HOM05D006117 ORTHO05D007996 6.0e-107 392.1 393 48.1
Solyc05g050710.3 Solanum lycopersicum HOM05D006117 ORTHO05D007996 2.3e-106 390.2 394 49.7
Manes.05G182800 Manihot esculenta HOM05D006117 ORTHO05D007996 3.0e-106 389.8 391 48.1
AL1G40910 Arabidopsis lyrata HOM05D006117 ORTHO05D007996 3.9e-106 389.4 393 48.9
Thhalv10007681m.g Eutrema salsugineum HOM05D006117 ORTHO05D007996 3.9e-106 389.4 393 49.4
BcaB03g13981 Brassica carinata HOM05D006117 ORTHO05D007996 6.6e-106 388.7 393 49.6
PGSC0003DMG400007000 Solanum tuberosum HOM05D006117 ORTHO05D007996 6.6e-106 388.7 394 49.7
CAN.G112.13 Capsicum annuum HOM05D006117 ORTHO05D007996 8.7e-106 388.3 395 49.6
CARHR027100 Cardamine hirsuta HOM05D006117 ORTHO05D007996 8.7e-106 388.3 433 46.4
BcaC06g35298 Brassica carinata HOM05D006117 ORTHO05D007996 1.9e-105 387.1 393 49.4
Carub.0001s2604 Capsella rubella HOM05D006117 ORTHO05D007996 2.5e-105 386.7 393 49.4
BraA07t28958Z Brassica rapa HOM05D006117 ORTHO05D007996 3.3e-105 386.3 393 49.9
AT1G27480 Arabidopsis thaliana HOM05D006117 ORTHO05D007996 4.3e-105 386.0 393 48.6
Migut.C00400 Erythranthe guttata HOM05D006117 ORTHO05D007996 4.3e-105 386.0 424 47.2
A07p11730 Brassica napus HOM05D006117 ORTHO05D007996 5.6e-105 385.6 393 49.9
C07p17700 Brassica napus HOM05D006117 ORTHO05D007996 9.6e-105 384.8 393 49.1
Sp1g23730 Schrenkiella parvula HOM05D006117 ORTHO05D007996 4.7e-104 382.5 393 49.9
arahy.Tifrunner.gnm1.ann1.6JMM3R Arachis hypogaea HOM05D006117 ORTHO05D007996 5.2e-103 379.0 396 49.5
SGA_v2.0_scaffold238G43920 Striga asiatica HOM05D006117 ORTHO05D007996 6.9e-103 378.6 415 46.7
CsaV3_6G002500 Cucumis sativus L. HOM05D006117 ORTHO05D007996 1.2e-102 377.9 395 48.9
Aa31LG7G10150 Aethionema arabicum HOM05D006117 ORTHO05D007996 2.6e-102 376.7 395 47.3
ClCG08G002010 Citrullus lanatus HOM05D006117 ORTHO05D007996 6.4e-101 372.1 395 47.8
Sed0008074 Sechium edule HOM05D006117 ORTHO05D007996 1.1e-100 371.3 395 47.3
GSVIVG01009315001 Vitis vinifera HOM05D006117 ORTHO05D007996 7.8e-99 365.2 391 48.1
MELO3C025035.2 Cucumis melo HOM05D006117 ORTHO05D007996 1.0e-98 364.8 405 46.9
arahy.Tifrunner.gnm1.ann1.NM5DTL Arachis hypogaea HOM05D006117 ORTHO05D007996 3.9e-98 362.8 396 48.2
Os03g0730000 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 6.6e-98 362.1 411 46.2
Atru.chr13.856 Acer truncatum HOM05D006117 ORTHO05D007996 2.0e-94 350.5 403 46.4
Haze_22413 Corylus avellana HOM05D006117 ORTHO05D007996 1.1e-92 344.7 389 44.7
Sc15g0005440 Simmondsia chinensis HOM05D006117 ORTHO05D007996 5.6e-81 305.8 290 50.3
ATR0739G041 Amborella trichopoda HOM05D006117 ORTHO05D007996 2.8e-80 303.5 283 51.2
vmacro21425 Vaccinium macrocarpon HOM05D006117 ORTHO05D007996 6.5e-77 292.4 290 49.7
Lalb_Chr08g0245251 Lupinus albus HOM05D006117 ORTHO05D007996 8.4e-77 292.0 286 50.3
Zm00001eb025570 Zea mays HOM05D006117 ORTHO05D007996 2.1e-75 287.3 380 42.4
Dinv39211 Davidia involucrata HOM05D006117 ORTHO05D007996 7.9e-75 285.4 256 53.9
Sopen05g029120 Solanum pennellii HOM05D006117 ORTHO05D007996 1.3e-74 284.6 286 51.4
Os03g0232800 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 1.1e-68 265.0 371 41.2
Zm00001eb124520 Zea mays HOM05D006117 ORTHO05D007996 2.5e-60 237.3 395 35.9
Os10g0163370 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 3.6e-59 233.4 398 37.9
Os02g0589000 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 6.7e-58 229.2 401 33.4
Zm00001eb096490 Zea mays HOM05D006117 ORTHO05D007996 3.7e-56 223.4 417 34.3
Zm00001eb096400 Zea mays HOM05D006117 ORTHO05D007996 8.2e-56 222.2 395 35.2
Os02g0590400 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 3.1e-55 220.3 400 35.0
Zm00001eb096390 Zea mays HOM05D006117 ORTHO05D007996 1.4e-52 211.5 385 34.5
Os02g0589700 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 1.6e-46 191.4 293 35.8
Glyma.04G047002 Glycine max HOM05D006117 ORTHO05D007996 4.0e-42 176.8 155 56.1
Zm00001eb399490 Zea mays HOM05D006117 ORTHO05D007996 5.7e-41 172.9 285 34.7
PRCOL_00003976 Prasinoderma coloniale HOM05D006117 ORTHO05D007996 1.0e-37 162.2 438 29.5
HPP92_023765 Vanilla planifolia HOM05D006117 ORTHO05D007996 4.0e-34 150.2 141 53.2
vmacro21426 Vaccinium macrocarpon HOM05D006117 ORTHO05D007996 1.8e-23 114.8 103 51.5
ATR0739G169 Amborella trichopoda HOM05D006117 ORTHO05D007996 1.6e-22 111.7 100 51.0
Lalb_Chr08g0245261 Lupinus albus HOM05D006117 ORTHO05D007996 1.7e-21 108.2 111 45.9
Os01g0946300 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 3.7e-16 90.5 157 33.1
Zm00001eb120460 Zea mays HOM05D006117 ORTHO05D007996 2.0e-09 68.2 105 43.8
BolC7t42277H Brassica oleracea HOM05D006117 ORTHO05D007996 9.8e-09 65.9 50 56.0
Mapoly0008s0119 Marchantia polymorpha HOM05D001762 ORTHO05D001774 3.7e-08 63.9 235 27.7
THA.LOC104820844 Tarenaya hassleriana HOM05D002501 ORTHO05D002952 4.9e-08 63.5 229 27.1
Os02g0590200 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 6.4e-08 63.2 88 40.9
Ciclev10011705m.g Citrus clementina HOM05D002501 ORTHO05D002952 1.1e-07 62.4 233 25.8
Glyma.07G221800 Glycine max HOM05D002501 ORTHO05D002952 3.2e-07 60.8 228 26.3
Lj4g0014554 Lotus japonicus HOM05D002501 ORTHO05D002952 3.2e-07 60.8 206 27.7
Glyma.20G020800 Glycine max HOM05D002501 ORTHO05D002952 4.1e-07 60.5 228 26.3
VMungo0251G2180 Vigna mungo HOM05D002501 ORTHO05D002952 9.2e-07 59.3 233 25.3
Os02g0590000 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D293516 1.2e-06 58.9 124 29.8
Pp3c22_13120 Physcomitrium patens HOM05D002501 ORTHO05D002952 1.2e-06 58.9 209 27.3
Manes.13G001900 Manihot esculenta HOM05D002501 ORTHO05D002952 1.6e-06 58.5 220 27.3
Aa31LG5G13790 Aethionema arabicum HOM05D002501 ORTHO05D002952 2.1e-06 58.2 231 24.7
PGSC0003DMG400010519 Solanum tuberosum HOM05D006117 ORTHO05D007996 7.8e-06 56.2 60 48.3


User provided reference genes

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