Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 1.3e-152 543.1 285 100.0
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 1.3e-27 127.9 146 44.5
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 2.8e-27 126.7 178 42.1
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 2.8e-27 126.7 144 45.8
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 6.3e-27 125.6 131 48.1
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 8.2e-27 125.2 136 44.1
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 8.2e-27 125.2 202 36.1
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 1.1e-26 124.8 123 49.6
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 1.1e-26 124.8 141 46.8
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 1.4e-26 124.4 146 43.2
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 1.4e-26 124.4 202 38.6
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 1.4e-26 124.4 141 46.1
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 1.8e-26 124.0 187 37.4
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 3.1e-26 123.2 146 43.8
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 3.1e-26 123.2 146 41.1
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 4.1e-26 122.9 207 39.1
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 4.1e-26 122.9 136 43.4
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 5.3e-26 122.5 195 36.9
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 7.0e-26 122.1 163 39.9
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 7.0e-26 122.1 124 47.6
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 9.1e-26 121.7 195 36.9
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 9.1e-26 121.7 146 40.4
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 9.1e-26 121.7 163 38.7
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 1.2e-25 121.3 148 41.9
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 1.2e-25 121.3 158 40.5
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 1.2e-25 121.3 143 44.8
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 1.2e-25 121.3 141 45.4
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 2.0e-25 120.6 128 45.3
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 2.6e-25 120.2 163 42.3
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 2.6e-25 120.2 187 37.4
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 2.6e-25 120.2 139 43.9
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 3.5e-25 119.8 129 45.0
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 3.5e-25 119.8 174 38.5
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 4.5e-25 119.4 171 39.8
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 4.5e-25 119.4 187 36.4
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 4.5e-25 119.4 135 45.9
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 5.9e-25 119.0 161 41.0
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 5.9e-25 119.0 143 42.7
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 7.7e-25 118.6 187 36.9
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 7.7e-25 118.6 187 41.2
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 7.7e-25 118.6 155 43.2
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 1.0e-24 118.2 148 41.2
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 1.0e-24 118.2 142 43.7
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 1.3e-24 117.9 148 41.2
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 1.3e-24 117.9 126 46.0
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 1.3e-24 117.9 168 40.5
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 1.3e-24 117.9 137 43.1
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 1.7e-24 117.5 172 39.5
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 1.7e-24 117.5 139 43.9
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 2.2e-24 117.1 128 45.3
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 2.2e-24 117.1 174 38.5
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 2.9e-24 116.7 144 42.4
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 2.9e-24 116.7 150 39.3
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.9e-24 116.7 150 39.3
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 5.0e-24 115.9 113 49.6
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 6.5e-24 115.5 130 42.3
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 6.5e-24 115.5 142 43.7
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 8.5e-24 115.2 187 35.8
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 8.5e-24 115.2 150 38.7
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 8.5e-24 115.2 173 36.4
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 1.1e-23 114.8 150 38.7
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 1.1e-23 114.8 126 47.6
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 1.4e-23 114.4 152 42.1
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 1.4e-23 114.4 152 42.1
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 1.4e-23 114.4 136 46.3
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 2.5e-23 113.6 169 36.7
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 3.2e-23 113.2 136 46.3
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 4.2e-23 112.8 151 40.4
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 4.2e-23 112.8 145 38.6
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 5.5e-23 112.5 134 43.3
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 9.4e-23 111.7 143 45.5
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 9.4e-23 111.7 124 46.8
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 1.2e-22 111.3 124 45.2
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 1.2e-22 111.3 164 42.1
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 1.6e-22 110.9 124 45.2
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 1.6e-22 110.9 123 44.7
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 1.6e-22 110.9 136 44.9
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 2.7e-22 110.2 159 37.7
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 2.7e-22 110.2 184 38.0
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 3.6e-22 109.8 124 46.8
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 4.7e-22 109.4 134 40.3
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 6.1e-22 109.0 113 44.2
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 8.0e-22 108.6 172 40.1
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 8.0e-22 108.6 157 36.9
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 1.0e-21 108.2 157 40.8
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 1.4e-21 107.8 121 43.0
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 1.4e-21 107.8 131 43.5
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 1.8e-21 107.5 169 35.5
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 1.8e-21 107.5 158 39.2
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 3.9e-21 106.3 131 43.5
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 1.5e-20 104.4 170 32.9
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 1.5e-20 104.4 137 40.9
AagrBONN_evm.TU.Sc2ySwM_117.3931 Anthoceros agrestis HOM05D004603 ORTHO05D005244 9.7e-20 101.7 130 41.5
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 1.3e-19 101.3 140 42.1
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 2.2e-19 100.5 125 40.0
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 2.8e-19 100.1 133 44.4
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 3.7e-19 99.8 158 38.0
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 8.2e-19 98.6 129 41.9
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 1.1e-18 98.2 85 51.8
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 1.8e-18 97.4 145 35.9
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 2.4e-18 97.1 137 38.0
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 3.1e-18 96.7 132 42.4
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 4.1e-18 96.3 156 34.6
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 5.3e-18 95.9 134 37.3
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 5.3e-18 95.9 85 50.6
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 5.3e-18 95.9 114 42.1
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 9.1e-18 95.1 161 36.6
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 9.1e-18 95.1 139 37.4
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 1.2e-17 94.7 110 41.8
SMO137G0333 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 1.2e-17 94.7 134 45.5
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 2.0e-17 94.0 137 38.0
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 2.6e-17 93.6 97 46.4
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 2.6e-17 93.6 132 34.8
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 3.5e-17 93.2 179 34.6
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 3.5e-17 93.2 129 38.8
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 4.5e-17 92.8 145 37.9
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 1.7e-16 90.9 112 40.2
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 1.7e-16 90.9 127 40.9
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 2.2e-16 90.5 177 31.6
SMO170G0061 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 2.9e-16 90.1 140 44.3
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 3.8e-16 89.7 171 33.3
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 8.5e-16 88.6 146 36.3
FvH4_5g29020 Fragaria vesca HOM05D004603 ORTHO05D005244 1.1e-15 88.2 90 41.1
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 1.5e-15 87.8 125 40.8
FAN18G3634 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.5e-15 87.8 90 41.1
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 2.5e-15 87.0 140 36.4
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 2.5e-15 87.0 94 50.0
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 5.5e-15 85.9 161 32.9
CAN.G1571.2 Capsicum annuum HOM05D004603 ORTHO05D005244 9.4e-15 85.1 89 48.3
CDE09G0498 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 1.2e-14 84.7 77 46.8
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 1.6e-14 84.3 146 35.6
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 1.6e-14 84.3 123 35.0
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 1.6e-14 84.3 118 41.5
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 2.1e-14 84.0 153 36.6
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 4.7e-14 82.8 143 35.7
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 8.0e-14 82.0 80 46.2
RcHm_v2.0_Chr7g0218601 Rosa chinensis HOM05D004603 ORTHO05D005244 1.0e-13 81.6 69 49.3
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 2.3e-13 80.5 121 36.4
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 4.0e-13 79.7 181 29.8
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 6.8e-13 79.0 158 31.0
Zm00001eb140990 Zea mays HOM05D004603 ORTHO05D005244 8.8e-13 78.6 123 38.2
FAN13G2986 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.0e-12 77.4 79 45.6
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 4.4e-12 76.3 121 34.7
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 5.7e-12 75.9 84 44.0
Cre09.g388245 Chlamydomonas reinhardtii HOM05D004603 ORTHO05D005244 5.7e-12 75.9 82 46.3
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 7.5e-12 75.5 180 29.4
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 9.7e-12 75.1 118 38.1
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 2.8e-11 73.6 78 44.9
ECA248G0603 Erigeron canadensis HOM05D004603 ORTHO05D005244 3.7e-11 73.2 80 46.2
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 6.3e-11 72.4 89 42.7
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 4.1e-10 69.7 173 31.2
AagrBONN_evm.TU.Sc2ySwM_368.759 Anthoceros agrestis HOM05D004603 ORTHO05D005244 9.1e-10 68.6 98 37.8
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 4.5e-09 66.2 132 33.3
CARHR033890 Cardamine hirsuta HOM05D004603 ORTHO05D005244 1.0e-08 65.1 169 27.8
FAN08G2679 Fragaria x ananassa HOM05D004603 ORTHO05D005244 9.4e-07 58.5 109 33.9
A01p20230 Brassica napus HOM05D017989 ORTHO05D021787 2.1e-06 57.4 131 29.8
AUR62017456 Chenopodium quinoa HOM05D004603 ORTHO05D005244 6.1e-06 55.8 121 34.7
MCO07G134 Micromonas commoda HOM05D004603 ORTHO05D005244 6.1e-06 55.8 75 42.7


User provided reference genes

Program Settings