Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 5.5e-182 641.0 352 100.0
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 7.4e-62 241.9 346 49.7
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 8.8e-55 218.4 349 43.6
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 2.2e-53 213.8 349 44.1
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 4.8e-53 212.6 332 44.0
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 9.1e-52 208.4 351 41.3
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 9.1e-52 208.4 353 41.6
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 1.6e-51 207.6 354 42.1
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 1.6e-51 207.6 350 42.0
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 2.7e-51 206.8 349 41.8
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 3.5e-51 206.5 351 41.6
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 5.9e-51 205.7 349 42.7
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 2.9e-50 203.4 350 41.4
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 2.9e-50 203.4 349 41.5
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 2.9e-50 203.4 344 41.9
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 1.1e-49 201.4 350 41.7
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 1.1e-49 201.4 349 41.8
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 1.9e-49 200.7 350 41.1
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 3.2e-49 199.9 354 41.8
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 7.2e-49 198.7 350 40.9
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 9.4e-49 198.4 358 42.7
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 9.4e-49 198.4 356 41.6
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 2.1e-48 197.2 350 41.7
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 3.6e-48 196.4 350 40.3
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 6.1e-48 195.7 350 41.1
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 6.1e-48 195.7 350 41.1
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 8.0e-48 195.3 344 40.1
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 1.4e-47 194.5 359 41.8
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 1.8e-47 194.1 354 41.8
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 1.8e-47 194.1 353 42.2
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.3e-47 193.7 349 41.0
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 4.0e-47 193.0 353 41.6
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 4.0e-47 193.0 353 41.6
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 5.2e-47 192.6 345 41.2
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 6.8e-47 192.2 351 39.3
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 8.8e-47 191.8 353 39.4
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 8.8e-47 191.8 361 40.4
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 1.2e-46 191.4 356 41.3
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 1.5e-46 191.0 351 39.3
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 1.5e-46 191.0 355 41.4
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 2.0e-46 190.7 345 41.7
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 2.0e-46 190.7 350 39.7
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 2.6e-46 190.3 350 40.0
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.6e-46 190.3 350 40.0
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 3.4e-46 189.9 356 39.6
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 5.7e-46 189.1 349 39.0
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 7.5e-46 188.7 349 41.8
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 1.7e-45 187.6 352 40.6
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 1.7e-45 187.6 348 39.7
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 2.2e-45 187.2 356 41.0
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 2.8e-45 186.8 361 38.2
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 3.7e-45 186.4 348 38.2
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 3.7e-45 186.4 360 40.8
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 4.8e-45 186.0 348 38.2
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 4.8e-45 186.0 344 40.7
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 6.3e-45 185.7 365 41.1
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 8.3e-45 185.3 338 41.7
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 1.1e-44 184.9 361 39.9
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 1.4e-44 184.5 356 38.8
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 1.8e-44 184.1 350 39.1
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 5.4e-44 182.6 357 39.5
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 1.2e-43 181.4 357 40.6
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 1.2e-43 181.4 357 40.6
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 1.2e-43 181.4 354 38.7
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 1.6e-43 181.0 350 38.0
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 2.0e-43 180.6 363 38.6
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 2.0e-43 180.6 363 38.6
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 2.0e-43 180.6 332 40.1
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 4.5e-43 179.5 360 39.2
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 5.9e-43 179.1 365 40.3
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 1.0e-42 178.3 355 39.4
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 2.2e-42 177.2 352 38.6
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 3.8e-42 176.4 348 39.1
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 8.5e-42 175.3 360 37.5
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 1.1e-41 174.9 348 37.6
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 1.5e-41 174.5 379 38.5
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 2.5e-41 173.7 350 38.9
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 2.5e-41 173.7 350 38.9
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 3.2e-41 173.3 348 38.8
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 7.2e-41 172.2 342 37.7
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 1.0e-39 168.3 370 37.8
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 1.0e-39 168.3 351 38.5
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 1.8e-39 167.5 347 37.8
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 1.8e-39 167.5 351 36.2
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 2.3e-39 167.2 349 38.7
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 2.3e-39 167.2 357 38.1
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 5.2e-39 166.0 338 39.6
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 5.2e-39 166.0 349 36.7
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 6.8e-39 165.6 361 38.5
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 8.8e-39 165.2 350 37.7
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 1.2e-38 164.9 349 37.8
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 1.5e-38 164.5 362 37.8
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 8.3e-37 158.7 366 37.2
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 1.4e-36 157.9 350 36.3
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 4.1e-36 156.4 348 36.5
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 4.1e-36 156.4 353 35.1
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 1.2e-35 154.8 373 37.5
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 7.7e-35 152.1 350 36.0
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 7.7e-35 152.1 435 32.0
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 7.7e-35 152.1 348 35.9
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 8.6e-34 148.7 362 34.8
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.5e-33 147.9 357 35.0
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 1.9e-33 147.5 358 35.5
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 2.5e-33 147.1 357 35.3
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 3.3e-33 146.7 316 38.0
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 3.3e-33 146.7 364 36.3
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 2.1e-32 144.1 385 33.2
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 8.0e-32 142.1 353 34.0
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 8.0e-32 142.1 353 34.0
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 8.0e-32 142.1 354 35.6
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 1.8e-31 141.0 355 35.2
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 8.9e-31 138.7 352 35.8
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 1.2e-30 138.3 355 36.1
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 4.4e-30 136.3 366 33.1
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 1.7e-29 134.4 366 32.8
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 3.7e-29 133.3 371 34.5
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 4.1e-28 129.8 358 32.4
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 7.8e-27 125.6 294 37.1
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 4.3e-25 119.8 354 33.1
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 8.0e-24 115.5 333 33.0
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 2.3e-23 114.0 290 32.4
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 7.5e-22 109.0 129 53.5
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 3.7e-21 106.7 358 30.7
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 7.0e-20 102.4 386 30.8
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 2.0e-19 100.9 221 37.1
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 1.3e-18 98.2 349 28.4
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 3.9e-18 96.7 314 30.6
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 1.2e-16 91.7 358 31.3
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 1.6e-16 91.3 179 38.0
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 2.1e-16 90.9 274 33.9
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 3.1e-15 87.0 107 47.7
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 3.7e-13 80.1 149 36.9
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 1.4e-12 78.2 327 28.7
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 2.4e-12 77.4 123 41.5
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 3.2e-12 77.0 305 26.6
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 1.0e-10 72.0 89 49.4
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 1.1e-09 68.6 134 35.1
Cre02.g082300 Chlamydomonas reinhardtii HOM05D004638 ORTHO05D005443 9.5e-09 65.5 399 26.8
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 3.6e-08 63.5 292 27.7
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 8.9e-07 58.9 113 39.8
Lj3g0021975 Lotus japonicus HOM05D004638 ORTHO05D005443 4.4e-06 56.6 102 42.2


User provided reference genes

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