Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0121s0012 Marchantia polymorpha HOM05D011635 ORTHO05D022906 0.0e+00 1766.9 988 100.0
Mapoly0143s0004 Marchantia polymorpha HOM05D011635 ORTHO05D022906 1.4e-187 661.4 977 41.7
Mapoly0129s0027 Marchantia polymorpha HOM05D011635 ORTHO05D022906 5.4e-136 490.0 779 36.6
Mapoly0093s0015 Marchantia polymorpha HOM05D003532 ORTHO05D022906 1.6e-76 292.4 814 29.7
Mapoly0225s0002 Marchantia polymorpha HOM05D003532 ORTHO05D022906 5.0e-65 254.2 661 27.4
Mapoly0225s0001 Marchantia polymorpha HOM05D003532 ORTHO05D022906 5.5e-64 250.8 605 28.3
Mapoly0049s0124 Marchantia polymorpha HOM05D011635 ORTHO05D251513 1.5e-37 162.9 206 44.7
Mapoly0039s0118 Marchantia polymorpha HOM05D011635 ORTHO05D253610 5.6e-32 144.4 181 46.4
CBR_g46414 Chara braunii HOM05D003532 ORTHO05D003298 7.5e-29 134.0 634 23.2
Mapoly0036s0003 Marchantia polymorpha HOM05D011635 ORTHO05D256686 4.9e-28 131.3 215 38.6
Mapoly0091s0034 Marchantia polymorpha HOM05D011635 ORTHO05D256211 2.4e-27 129.0 210 39.5
Prupe.4G231800 Prunus persica HOM05D003532 ORTHO05D003298 1.0e-25 123.6 744 23.1
Lj6g0018545 Lotus japonicus HOM05D003532 ORTHO05D003298 3.0e-25 122.1 562 22.6
RcHm_v2.0_Chr5g0042451 Rosa chinensis HOM05D003532 ORTHO05D003298 3.9e-25 121.7 744 23.8
vmacro11564 Vaccinium macrocarpon HOM05D003532 ORTHO05D003298 5.0e-25 121.3 533 24.4
Psat5g171200 Pisum sativum HOM05D003532 ORTHO05D003298 1.5e-24 119.8 554 22.9
Rhsim06G0226300 Rhododendron simsii HOM05D003532 ORTHO05D003298 1.5e-24 119.8 534 23.6
Mapoly0149s0007 Marchantia polymorpha HOM05D011635 ORTHO05D252309 3.3e-24 118.6 202 34.2
THA.LOC104811650 Tarenaya hassleriana HOM05D003532 ORTHO05D003298 9.5e-24 117.1 574 22.6
FAN11G2286 Fragaria x ananassa HOM05D003532 ORTHO05D003298 1.2e-23 116.7 692 23.8
TPR.G1921 Trifolium pratense HOM05D003532 ORTHO05D003298 1.2e-23 116.7 554 23.1
FvH4_3g23950 Fragaria vesca HOM05D003532 ORTHO05D003298 1.6e-23 116.3 692 24.3
FAN25G3696 Fragaria x ananassa HOM05D003532 ORTHO05D003298 1.6e-23 116.3 692 23.6
Lalb_Chr15g0081911 Lupinus albus HOM05D003532 ORTHO05D003298 1.6e-23 116.3 736 22.6
PSO210G6712 Papaver somniferum HOM05D003532 ORTHO05D003298 1.6e-23 116.3 693 22.2
Ciclev10007256m.g Citrus clementina HOM05D003532 ORTHO05D003298 2.1e-23 115.9 737 22.9
AUR62015941 Chenopodium quinoa HOM05D003532 ORTHO05D003298 2.8e-23 115.5 653 24.3
CiPaw.11G200200 Carya illinoinensis HOM05D003532 ORTHO05D003298 3.6e-23 115.2 697 23.2
Duzib213G0377 Durio zibethinus HOM05D003532 ORTHO05D003298 3.6e-23 115.2 831 22.4
Mapoly0078s0061 Marchantia polymorpha HOM05D011635 ORTHO05D251509 4.7e-23 114.8 209 36.4
QL08p005936 Quercus lobata HOM05D003532 ORTHO05D003298 4.7e-23 114.8 693 24.4
TWI39G0358 Tripterygium wilfordii HOM05D003532 ORTHO05D003298 6.2e-23 114.4 553 23.3
Atru.chr2.3624 Acer truncatum HOM05D003532 ORTHO05D003298 1.4e-22 113.2 735 22.4
Dinv10304 Davidia involucrata HOM05D003532 ORTHO05D003298 1.4e-22 113.2 737 23.2
MD03G1189500 Malus domestica HOM05D003532 ORTHO05D003298 1.4e-22 113.2 697 23.5
Ca_16739_v3 Cicer arietinum L. HOM05D003532 ORTHO05D003298 1.8e-22 112.8 739 22.2
FAN21G0475 Fragaria x ananassa HOM05D003532 ORTHO05D003298 2.3e-22 112.5 683 22.8
FAN16G2517 Fragaria x ananassa HOM05D003532 ORTHO05D003298 3.1e-22 112.1 684 23.8
CSS0034495 Camellia sinensis var. sinensis HOM05D003532 ORTHO05D003298 4.0e-22 111.7 736 23.0
Eucgr.F00625 Eucalyptus grandis HOM05D003532 ORTHO05D003298 4.0e-22 111.7 737 22.1
Mapoly0117s0045 Marchantia polymorpha HOM05D011635 ORTHO05D254071 4.0e-22 111.7 197 38.1
Cc05_g14600 Coffea canephora HOM05D003532 ORTHO05D003298 6.8e-22 110.9 683 23.6
arahy.Tifrunner.gnm1.ann1.5HZ9E9 Arachis hypogaea HOM05D003532 ORTHO05D003298 8.9e-22 110.5 622 22.8
PGR083G2272 Punica granatum HOM05D003532 ORTHO05D003298 8.9e-22 110.5 745 22.0
FAN25G2872 Fragaria x ananassa HOM05D003532 ORTHO05D003298 1.2e-21 110.2 691 23.3
Mapoly0078s0062 Marchantia polymorpha HOM05D011635 ORTHO05D251781 1.5e-21 109.8 199 34.2
Lj1P884T43 Lonicera japonica HOM05D003532 ORTHO05D003298 2.0e-21 109.4 509 22.4
Oeu019616.1 Olea europaea HOM05D003532 ORTHO05D003298 2.6e-21 109.0 685 22.0
VMungo0540G1592 Vigna mungo HOM05D003532 ORTHO05D003298 7.5e-21 107.5 603 21.7
Nn1g07430 Nelumbo nucifera HOM05D003532 ORTHO05D003298 9.8e-21 107.1 742 22.4
Haze_09779 Corylus avellana HOM05D003532 ORTHO05D003298 1.3e-20 106.7 649 23.7
Glyma.08G325400 Glycine max HOM05D003532 ORTHO05D003298 1.3e-20 106.7 739 21.4
Cfa020236 Carpinus fangiana HOM05D003532 ORTHO05D003298 1.7e-20 106.3 691 23.6
Thecc.07G023400 Theobroma cacao HOM05D003532 ORTHO05D003298 1.7e-20 106.3 840 21.1
Glyma.18G081800 Glycine max HOM05D003532 ORTHO05D003298 2.2e-20 105.9 744 21.5
Manes.15G064000 Manihot esculenta HOM05D003532 ORTHO05D003298 2.2e-20 105.9 795 21.4
Hund23137 Selenicereus undatus HOM05D003532 ORTHO05D003298 2.2e-20 105.9 745 22.0
CANSAT11G0309 Cannabis sativa HOM05D003532 ORTHO05D003298 2.9e-20 105.5 597 21.9
Pp3c10_20720 Physcomitrium patens HOM05D003532 ORTHO05D003298 3.7e-20 105.1 829 20.1
SMO209G0011 Selaginella moellendorffii HOM05D009355 ORTHO05D011581 4.9e-20 104.8 350 26.3
GSVIVG01037769001 Vitis vinifera HOM05D003532 ORTHO05D003298 4.9e-20 104.8 513 23.2
EL10Ac4g07623 Beta vulgaris HOM05D003532 ORTHO05D003298 6.4e-20 104.4 643 22.7
arahy.Tifrunner.gnm1.ann1.IRWJ3E Arachis hypogaea HOM05D003532 ORTHO05D003298 8.3e-20 104.0 546 22.5
SMO089G0013 Selaginella moellendorffii HOM05D009355 ORTHO05D011581 1.1e-19 103.6 490 23.1
Gohir.A01G086600 Gossypium hirsutum HOM05D003532 ORTHO05D003298 1.4e-19 103.2 704 23.0
Gohir.D01G072800 Gossypium hirsutum HOM05D003532 ORTHO05D003298 1.4e-19 103.2 704 22.7
Potri.001G361200 Populus trichocarpa HOM05D003532 ORTHO05D003298 1.4e-19 103.2 508 22.4
Pp3c3_24130 Physcomitrium patens HOM05D003532 ORTHO05D003298 2.4e-19 102.4 873 19.9
C09p46210 Brassica napus HOM05D003532 ORTHO05D003298 3.2e-19 102.1 757 20.7
SMO200G0092 Selaginella moellendorffii HOM05D009355 ORTHO05D011581 3.2e-19 102.1 485 22.5
TAR631G0007 Trochodendron aralioides HOM05D003532 ORTHO05D003298 3.2e-19 102.1 746 21.7
CARHR268860 Cardamine hirsuta HOM05D003532 ORTHO05D003298 4.1e-19 101.7 566 22.4
CBR_g46001 Chara braunii HOM05D003532 ORTHO05D003298 5.4e-19 101.3 605 23.3
Mapoly0023s0009 Marchantia polymorpha HOM05D011635 ORTHO05D255445 5.4e-19 101.3 242 36.0
Sopen03g031830 Solanum pennellii HOM05D003532 ORTHO05D003298 5.4e-19 101.3 473 22.6
Mapoly0203s0011 Marchantia polymorpha HOM05D011635 ORTHO05D252919 9.2e-19 100.5 399 38.6
Lsat_1_v5_gn_0_15220 Lactuca sativa HOM05D003532 ORTHO05D003298 1.2e-18 100.1 649 22.3
SMO200G0235 Selaginella moellendorffii HOM05D009355 ORTHO05D011581 1.2e-18 100.1 488 22.1
Aa31LG3G11480 Aethionema arabicum HOM05D003532 ORTHO05D003298 1.6e-18 99.8 413 22.0
BolC9t57486H Brassica oleracea HOM05D003532 ORTHO05D003298 2.0e-18 99.4 757 20.6
SMO200G0268 Selaginella moellendorffii HOM05D009355 ORTHO05D000371 2.0e-18 99.4 486 23.0
Peaxi162Scf00568g00016 Petunia axillaris HOM05D003532 ORTHO05D003298 2.7e-18 99.0 611 21.6
Carub.0008s1589 Capsella rubella HOM05D003532 ORTHO05D003298 3.5e-18 98.6 692 21.5
CDE04G0250 Ceratophyllum demersum HOM05D003532 ORTHO05D003298 3.5e-18 98.6 597 22.8
AagrBONN_evm.TU.Sc2ySwM_368.1056 Anthoceros agrestis HOM05D003532 ORTHO05D003298 4.6e-18 98.2 631 22.3
Solyc03g112750.4 Solanum lycopersicum HOM05D003532 ORTHO05D003298 4.6e-18 98.2 645 22.5
SMO200G0222 Selaginella moellendorffii HOM05D009355 ORTHO05D011581 6.0e-18 97.8 341 26.1
A10p12730 Brassica napus HOM05D003532 ORTHO05D003298 7.8e-18 97.4 688 21.2
AagrBONN_evm.TU.Sc2ySwM_362.1906 Anthoceros agrestis HOM05D003532 ORTHO05D003298 1.0e-17 97.1 590 20.8
AT5G55540 Arabidopsis thaliana HOM05D003532 ORTHO05D003298 1.0e-17 97.1 701 21.3
ECA240G1125 Erigeron canadensis HOM05D003532 ORTHO05D003298 1.0e-17 97.1 650 22.3
SMO200G0175 Selaginella moellendorffii HOM05D009355 ORTHO05D011581 1.0e-17 97.1 448 23.9
SMO209G0006 Selaginella moellendorffii HOM05D009355 ORTHO05D011581 1.0e-17 97.1 486 23.0
COL.COLO4_09777 Corchorus olitorius HOM05D003532 ORTHO05D003298 1.7e-17 96.3 585 23.2
AL8G31090 Arabidopsis lyrata HOM05D003532 ORTHO05D003298 2.3e-17 95.9 515 21.9
BraA10t43365Z Brassica rapa HOM05D003532 ORTHO05D003298 2.3e-17 95.9 688 21.4
CAN.G1166.13 Capsicum annuum HOM05D003532 ORTHO05D003298 3.0e-17 95.5 583 22.8
CBR_g38597 Chara braunii HOM05D003532 ORTHO05D003298 3.0e-17 95.5 641 20.1
SHI26496 Sapria himalayana HOM05D003532 ORTHO05D003298 3.9e-17 95.1 753 21.5
SMO203G0126 Selaginella moellendorffii HOM05D009355 ORTHO05D011581 3.9e-17 95.1 359 26.2
Sc07g0002980 Simmondsia chinensis HOM05D003532 ORTHO05D003298 3.9e-17 95.1 521 22.8
Thhalv10012444m.g Eutrema salsugineum HOM05D003532 ORTHO05D003298 5.0e-17 94.7 837 21.6
DCAR_016631 Daucus carota HOM05D003532 ORTHO05D003298 1.5e-16 93.2 469 22.8
Nitab4.5_0003218g0080 Nicotiana tabacum HOM05D003532 ORTHO05D003298 1.9e-16 92.8 475 24.0
Nitab4.5_0002423g0060 Nicotiana tabacum HOM05D003532 ORTHO05D003298 2.5e-16 92.4 519 24.3
Sp6g17430 Schrenkiella parvula HOM05D003532 ORTHO05D003298 3.3e-16 92.0 392 23.7
SMO089G0003 Selaginella moellendorffii HOM05D009355 ORTHO05D011581 3.3e-16 92.0 333 25.5
AagrBONN_evm.TU.Sc2ySwM_368.330 Anthoceros agrestis HOM05D002844 ORTHO05D003298 4.3e-16 91.7 545 22.4
AagrBONN_evm.TU.Sc2ySwM_340.449 Anthoceros agrestis HOM05D002844 ORTHO05D003298 7.3e-16 90.9 523 22.2
SMO089G0010 Selaginella moellendorffii HOM05D009355 ORTHO05D011581 9.5e-16 90.5 340 25.3
Actinidia00098 Actinidia chinensis HOM05D003532 ORTHO05D003298 2.1e-15 89.4 376 24.5
AUR62040667 Chenopodium quinoa HOM05D003532 ORTHO05D003298 2.8e-15 89.0 396 24.0
SGA_v2.0_scaffold171G38893 Striga asiatica HOM05D003532 ORTHO05D003298 3.6e-15 88.6 693 22.4
CBR_g40030 Chara braunii HOM05D007859 ORTHO05D003298 8.1e-15 87.4 475 23.2
Cpa.g.sc12.201 Carica papaya HOM05D003532 ORTHO05D003298 1.4e-14 86.7 560 24.1
Mapoly0002s0170 Marchantia polymorpha HOM05D003532 ORTHO05D003298 6.8e-14 84.3 606 21.3
Mapoly0033s0171 Marchantia polymorpha HOM05D003532 ORTHO05D003298 2.6e-13 82.4 387 22.5
AagrBONN_evm.TU.Sc2ySwM_362.1738 Anthoceros agrestis HOM05D003532 ORTHO05D003298 3.4e-13 82.0 311 23.8
AagrBONN_evm.TU.Sc2ySwM_362.2176 Anthoceros agrestis HOM05D003532 ORTHO05D003298 5.8e-13 81.3 704 21.3
AagrBONN_evm.TU.Sc2ySwM_344.5368 Anthoceros agrestis HOM05D003532 ORTHO05D003298 1.3e-12 80.1 349 23.2
CBR_g45627 Chara braunii HOM05D003532 ORTHO05D003298 1.3e-12 80.1 496 20.4
Ah.06g181150 Amaranthus hybridus HOM05D003532 ORTHO05D003298 2.2e-12 79.3 448 21.9
AagrBONN_evm.TU.Sc2ySwM_362.556 Anthoceros agrestis HOM05D003532 ORTHO05D003298 3.7e-12 78.6 555 22.7
SMO200G0015 Selaginella moellendorffii HOM05D009355 ORTHO05D011581 1.1e-11 77.0 488 20.3
AagrBONN_evm.TU.Sc2ySwM_362.1938 Anthoceros agrestis HOM05D003532 ORTHO05D003298 3.2e-11 75.5 318 22.3
CBR_g12186 Chara braunii HOM05D003532 ORTHO05D003298 3.2e-11 75.5 331 23.3
CBR_g38595 Chara braunii HOM05D003532 ORTHO05D003298 4.1e-11 75.1 248 24.2
AagrBONN_evm.TU.Sc2ySwM_340.760 Anthoceros agrestis HOM05D008597 ORTHO05D003298 1.2e-10 73.6 376 23.9
AagrBONN_evm.TU.Sc2ySwM_362.2132 Anthoceros agrestis HOM05D003532 ORTHO05D003298 2.7e-10 72.4 717 19.9
CBR_g38599 Chara braunii HOM05D003532 ORTHO05D003298 7.8e-10 70.9 672 20.2
CBR_g57789 Chara braunii HOM05D003532 ORTHO05D003298 3.0e-09 68.9 257 23.3
CBR_g12865 Chara braunii HOM05D003532 ORTHO05D003298 3.9e-09 68.6 277 24.9
AagrBONN_evm.TU.Sc2ySwM_340.453 Anthoceros agrestis HOM05D002844 ORTHO05D003298 6.6e-09 67.8 306 23.9
SMO356G0140 Selaginella moellendorffii HOM05D009355 ORTHO05D011581 1.1e-08 67.0 188 27.7
Mapoly0072s0037 Marchantia polymorpha HOM05D003532 ORTHO05D003298 1.5e-08 66.6 558 22.0
PGSC0003DMG400018206 Solanum tuberosum HOM05D003532 ORTHO05D003298 2.1e-07 62.8 195 22.6
Mapoly0117s0047 Marchantia polymorpha HOM05D011635 ORTHO05D252021 1.8e-06 59.7 106 39.6
AagrBONN_evm.TU.Sc2ySwM_362.1156 Anthoceros agrestis HOM05D003532 ORTHO05D003298 6.8e-06 57.8 158 29.1


User provided reference genes

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