Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0119s0028 Marchantia polymorpha HOM05D006645 ORTHO05D008129 3.4e-81 305.1 169 100.0
AagrBONN_evm.TU.Sc2ySwM_362.1750 Anthoceros agrestis HOM05D006645 ORTHO05D008129 6.1e-30 134.8 108 60.2
Pp3c2_6110 Physcomitrium patens HOM05D006645 ORTHO05D008129 2.0e-20 103.2 130 46.2
Pp3c14_10490 Physcomitrium patens HOM05D006645 ORTHO05D008129 5.8e-20 101.7 119 47.9
SMO165G0067 Selaginella moellendorffii HOM05D006645 ORTHO05D008129 1.9e-18 96.7 87 57.5
Sed0010334 Sechium edule HOM05D006645 ORTHO05D008129 3.9e-08 62.4 61 52.5
ATR0829G005 Amborella trichopoda HOM05D006062 ORTHO05D007613 5.1e-08 62.0 62 51.6
Aqoxy3G01868 Aquilegia oxysepala HOM05D006645 ORTHO05D008129 3.3e-07 59.3 41 63.4
CsaV3_1G000140 Cucumis sativus L. HOM05D006645 ORTHO05D008129 4.3e-07 58.9 66 47.0
Thhalv10014834m.g Eutrema salsugineum HOM05D006645 ORTHO05D008129 4.3e-07 58.9 67 43.3
Gohir.A12G194100 Gossypium hirsutum HOM05D006645 ORTHO05D008129 5.6e-07 58.5 55 47.3
Gohir.D12G196500 Gossypium hirsutum HOM05D006645 ORTHO05D008129 5.6e-07 58.5 55 47.3
Gorai.008G211100 Gossypium raimondii HOM05D006645 ORTHO05D008129 5.6e-07 58.5 55 47.3
Lj5C86G18 Lonicera japonica HOM05D006645 ORTHO05D008129 5.6e-07 58.5 55 50.9
Nitab4.5_0000976g0110 Nicotiana tabacum HOM05D006645 ORTHO05D008129 5.6e-07 58.5 41 61.0
Peaxi162Scf00314g00728 Petunia axillaris HOM05D006645 ORTHO05D008129 5.6e-07 58.5 68 50.0
arahy.Tifrunner.gnm1.ann1.GZNV26 Arachis hypogaea HOM05D006062 ORTHO05D007613 7.3e-07 58.2 46 56.5
arahy.Tifrunner.gnm1.ann1.Z544U3 Arachis hypogaea HOM05D006645 ORTHO05D008129 7.3e-07 58.2 56 53.6
Dinv23234 Davidia involucrata HOM05D006645 ORTHO05D008129 7.3e-07 58.2 61 50.8
Duzib177G0391 Durio zibethinus HOM05D006062 ORTHO05D007613 7.3e-07 58.2 62 48.4
FvH4_7g33550 Fragaria vesca HOM05D006062 ORTHO05D007613 7.3e-07 58.2 62 48.4
FAN03G0703 Fragaria x ananassa HOM05D006062 ORTHO05D007613 7.3e-07 58.2 62 48.4
Nitab4.5_0010893g0030 Nicotiana tabacum HOM05D006645 ORTHO05D008129 7.3e-07 58.2 41 63.4
Hund02967 Selenicereus undatus HOM05D006062 ORTHO05D007613 7.3e-07 58.2 49 53.1
HPP92_025509 Vanilla planifolia HOM05D006062 ORTHO05D007613 7.3e-07 58.2 62 48.4
HPP92_025526 Vanilla planifolia HOM05D006062 ORTHO05D007613 7.3e-07 58.2 62 48.4
GSVIVG01024454001 Vitis vinifera HOM05D006062 ORTHO05D007613 7.3e-07 58.2 62 48.4
arahy.Tifrunner.gnm1.ann1.FT61ID Arachis hypogaea HOM05D006645 ORTHO05D008129 9.5e-07 57.8 54 55.6
MELO3C026168.2 Cucumis melo HOM05D006645 ORTHO05D008129 9.5e-07 57.8 66 45.5
Thecc.03G141700 Theobroma cacao HOM05D006645 ORTHO05D008129 9.5e-07 57.8 93 38.7
ClCG06G018300 Citrullus lanatus HOM05D006645 ORTHO05D008129 1.2e-06 57.4 57 50.9
Lj1g0000604 Lotus japonicus HOM05D006645 ORTHO05D008129 1.2e-06 57.4 52 50.0
MSTRG.26938 Avicennia marina HOM05D006062 ORTHO05D007613 1.6e-06 57.0 62 46.8
CSS0045487 Camellia sinensis var. sinensis HOM05D006645 ORTHO05D008129 1.6e-06 57.0 61 44.3
CSS0048618 Camellia sinensis var. sinensis HOM05D006645 ORTHO05D008129 1.6e-06 57.0 61 44.3
Duzib084G1311 Durio zibethinus HOM05D006645 ORTHO05D008129 1.6e-06 57.0 41 61.0
Eucgr.K02190 Eucalyptus grandis HOM05D006645 ORTHO05D008129 1.6e-06 57.0 105 34.3
PGR142G0857 Punica granatum HOM05D006062 ORTHO05D007613 1.6e-06 57.0 62 48.4
TAR371G0070 Trochodendron aralioides HOM05D006645 ORTHO05D008129 1.6e-06 57.0 98 35.7
Duzib205G0637 Durio zibethinus HOM05D006645 ORTHO05D008129 2.1e-06 56.6 41 61.0
Gohir.D03G049700 Gossypium hirsutum HOM05D006062 ORTHO05D007613 2.1e-06 56.6 62 46.8
Gorai.003G051200 Gossypium raimondii HOM05D006062 ORTHO05D007613 2.1e-06 56.6 62 46.8
PGR142G3652 Punica granatum HOM05D006645 ORTHO05D008129 2.1e-06 56.6 56 46.4
Sp6g13160 Schrenkiella parvula HOM05D006645 ORTHO05D008129 2.1e-06 56.6 41 61.0
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 2.1e-06 56.6 46 54.3
Aqoxy3G02060 Aquilegia oxysepala HOM05D006062 ORTHO05D007613 2.8e-06 56.2 62 46.8
arahy.Tifrunner.gnm1.ann1.GUDI7G Arachis hypogaea HOM05D006062 ORTHO05D007613 2.8e-06 56.2 100 38.0
CARHR257180 Cardamine hirsuta HOM05D006645 ORTHO05D008129 2.8e-06 56.2 61 47.5
COL.COLO4_37268 Corchorus olitorius HOM05D006645 ORTHO05D008129 2.8e-06 56.2 39 61.5
Gohir.A02G139100 Gossypium hirsutum HOM05D006062 ORTHO05D007613 2.8e-06 56.2 62 45.2
Oeu013667.1 Olea europaea HOM05D006645 ORTHO05D008129 2.8e-06 56.2 39 64.1
Hund10027 Selenicereus undatus HOM05D006645 ORTHO05D008129 2.8e-06 56.2 44 56.8
SGA_v2.0_scaffold37G14674 Striga asiatica HOM05D006645 ORTHO05D008129 2.8e-06 56.2 93 38.7
CAN.G1008.52 Capsicum annuum HOM05D006645 ORTHO05D008129 3.6e-06 55.8 41 61.0
Cre24.g755197 Chlamydomonas reinhardtii HOM05D006645 ORTHO05D008129 3.6e-06 55.8 46 56.5
Nn4g22122 Nelumbo nucifera HOM05D006645 ORTHO05D008129 3.6e-06 55.8 55 49.1
PSO017G3202 Papaver somniferum HOM05D006645 ORTHO05D008129 3.6e-06 55.8 39 61.5
PSO478G4148 Papaver somniferum HOM05D006645 ORTHO05D008129 3.6e-06 55.8 39 61.5
VMungo0251G1538 Vigna mungo HOM05D006645 ORTHO05D008129 3.6e-06 55.8 41 61.0
GSVIVG01008662001 Vitis vinifera HOM05D006645 ORTHO05D008129 3.6e-06 55.8 41 61.0
ATR0582G272 Amborella trichopoda HOM05D006645 ORTHO05D008129 4.7e-06 55.5 52 50.0
AL8G25220 Arabidopsis lyrata HOM05D006645 ORTHO05D008129 4.7e-06 55.5 41 58.5
BcaC01g06063 Brassica carinata HOM05D006645 ORTHO05D008129 4.7e-06 55.5 41 58.5
BcaC01g06113 Brassica carinata HOM05D006645 ORTHO05D008129 4.7e-06 55.5 41 58.5
A03p16420 Brassica napus HOM05D006645 ORTHO05D008129 4.7e-06 55.5 41 58.5
C03p19310 Brassica napus HOM05D006645 ORTHO05D008129 4.7e-06 55.5 41 58.5
BolC3t14317H Brassica oleracea HOM05D006645 ORTHO05D008129 4.7e-06 55.5 41 58.5
BraA03t10932Z Brassica rapa HOM05D006645 ORTHO05D008129 4.7e-06 55.5 41 58.5
Carub.0006s1536 Capsella rubella HOM05D006062 ORTHO05D007613 4.7e-06 55.5 62 46.8
Carub.0008s1101 Capsella rubella HOM05D006645 ORTHO05D008129 4.7e-06 55.5 41 58.5
Duzib106G1742 Durio zibethinus HOM05D006062 ORTHO05D007613 4.7e-06 55.5 62 46.8
MD06G1129100 Malus domestica HOM05D006645 ORTHO05D008129 4.7e-06 55.5 55 54.5
Sed0000932 Sechium edule HOM05D006062 ORTHO05D007613 4.7e-06 55.5 62 46.8
Thecc.05G207500 Theobroma cacao HOM05D006062 ORTHO05D007613 4.7e-06 55.5 62 46.8
MSTRG.22813 Avicennia marina HOM05D006645 ORTHO05D008129 6.2e-06 55.1 98 33.7
Ciclev10012505m.g Citrus clementina HOM05D006062 ORTHO05D007613 6.2e-06 55.1 62 48.4
ECA232G4473 Erigeron canadensis HOM05D000001 ORTHO05D001247 6.2e-06 55.1 39 61.5
Glyma.01G229800 Glycine max HOM05D006062 ORTHO05D007613 6.2e-06 55.1 62 46.8
Glyma.08G007200 Glycine max HOM05D006645 ORTHO05D008129 6.2e-06 55.1 41 61.0
LjContig00222g0021869 Lotus japonicus HOM05D006062 ORTHO05D007613 6.2e-06 55.1 62 45.2
VMungo0720G1055 Vigna mungo HOM05D006062 ORTHO05D007613 6.2e-06 55.1 62 46.8
arahy.Tifrunner.gnm1.ann1.1BW3L6 Arachis hypogaea HOM05D006645 ORTHO05D008129 8.1e-06 54.7 41 58.5
arahy.Tifrunner.gnm1.ann1.D72E2J Arachis hypogaea HOM05D006645 ORTHO05D008129 8.1e-06 54.7 41 58.5
Cpa.g.sc2215.2 Carica papaya HOM05D006645 ORTHO05D008129 8.1e-06 54.7 68 44.1
CsaV3_5G005280 Cucumis sativus L. HOM05D006062 ORTHO05D007613 8.1e-06 54.7 62 45.2
MD01G1233200 Malus domestica HOM05D006062 ORTHO05D007613 8.1e-06 54.7 39 61.5
Manes.08G164800 Manihot esculenta HOM05D006062 ORTHO05D007613 8.1e-06 54.7 62 46.8
Phvul.002G037500 Phaseolus vulgaris HOM05D006062 ORTHO05D007613 8.1e-06 54.7 62 46.8
Solyc03g118130.3 Solanum lycopersicum HOM05D006645 ORTHO05D008129 8.1e-06 54.7 57 50.9
TAR622G0574 Trochodendron aralioides HOM05D006645 ORTHO05D008129 8.1e-06 54.7 39 64.1


User provided reference genes

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