Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 8.2e-57 223.4 105 100.0
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 5.9e-39 164.1 103 67.0
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 1.3e-38 162.9 99 71.7
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 1.1e-37 159.8 102 66.7
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 2.5e-37 158.7 99 73.7
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 4.4e-34 147.9 106 62.3
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 5.7e-34 147.5 105 62.9
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 3.7e-33 144.8 94 64.9
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 1.8e-32 142.5 95 66.3
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 2.4e-32 142.1 94 66.0
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 2.4e-32 142.1 97 64.9
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 2.4e-32 142.1 94 62.8
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 3.1e-32 141.7 104 60.6
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 3.1e-32 141.7 102 59.8
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 4.1e-32 141.4 95 65.3
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 4.1e-32 141.4 96 64.6
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 4.1e-32 141.4 98 60.2
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 5.3e-32 141.0 95 65.3
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 5.3e-32 141.0 94 64.9
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 5.3e-32 141.0 94 64.9
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 5.3e-32 141.0 94 64.9
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 5.3e-32 141.0 94 64.9
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 5.3e-32 141.0 94 64.9
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 9.1e-32 140.2 95 62.1
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 9.1e-32 140.2 95 63.2
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 9.1e-32 140.2 95 63.2
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.2e-31 139.8 95 62.1
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 1.2e-31 139.8 94 64.9
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 1.6e-31 139.4 95 63.2
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 2.0e-31 139.0 95 63.2
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 2.6e-31 138.7 95 62.1
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 2.6e-31 138.7 95 62.1
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 3.5e-31 138.3 94 60.6
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 3.5e-31 138.3 95 62.1
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 3.5e-31 138.3 95 62.1
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 3.5e-31 138.3 95 61.1
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 3.5e-31 138.3 95 61.1
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 4.5e-31 137.9 95 63.2
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 4.5e-31 137.9 95 63.2
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 4.5e-31 137.9 95 64.2
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 5.9e-31 137.5 95 61.1
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 5.9e-31 137.5 95 62.1
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 7.7e-31 137.1 95 62.1
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 7.7e-31 137.1 105 59.0
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 1.0e-30 136.7 95 62.1
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 1.0e-30 136.7 95 61.1
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 1.0e-30 136.7 95 62.1
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 1.0e-30 136.7 95 63.2
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 1.0e-30 136.7 95 63.2
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 1.3e-30 136.3 95 58.9
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 1.7e-30 136.0 101 59.4
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 1.7e-30 136.0 96 60.4
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 2.2e-30 135.6 98 57.1
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 2.2e-30 135.6 95 61.1
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 2.9e-30 135.2 95 62.1
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 2.9e-30 135.2 95 62.1
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 2.9e-30 135.2 96 61.5
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 2.9e-30 135.2 95 61.1
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 2.9e-30 135.2 101 59.4
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 3.8e-30 134.8 95 60.0
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 3.8e-30 134.8 95 62.1
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 5.0e-30 134.4 94 59.6
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 5.0e-30 134.4 96 61.5
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 5.0e-30 134.4 95 60.0
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 6.5e-30 134.0 95 61.1
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 8.5e-30 133.7 104 56.7
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 8.5e-30 133.7 95 61.1
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 8.5e-30 133.7 95 60.0
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 8.5e-30 133.7 95 60.0
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 1.1e-29 133.3 95 61.1
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 1.1e-29 133.3 95 62.1
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.1e-29 133.3 95 62.1
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.1e-29 133.3 95 62.1
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 1.1e-29 133.3 96 61.5
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 1.1e-29 133.3 95 60.0
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.9e-29 132.5 94 58.5
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 1.9e-29 132.5 95 60.0
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 2.5e-29 132.1 95 60.0
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 2.5e-29 132.1 96 60.4
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.5e-29 132.1 95 61.1
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.5e-29 132.1 95 61.1
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 2.5e-29 132.1 94 60.6
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 2.5e-29 132.1 95 60.0
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 2.5e-29 132.1 95 60.0
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 3.2e-29 131.7 95 60.0
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 3.2e-29 131.7 95 60.0
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 3.2e-29 131.7 95 60.0
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 3.2e-29 131.7 95 60.0
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 3.2e-29 131.7 95 58.9
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 3.2e-29 131.7 95 60.0
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 3.2e-29 131.7 93 59.1
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 3.2e-29 131.7 95 56.8
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 3.2e-29 131.7 93 59.1
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 3.2e-29 131.7 96 60.4
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 3.2e-29 131.7 95 60.0
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 4.2e-29 131.3 95 60.0
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 4.2e-29 131.3 95 60.0
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 4.2e-29 131.3 95 60.0
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 4.2e-29 131.3 95 60.0
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 4.2e-29 131.3 95 60.0
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 4.2e-29 131.3 95 60.0
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 4.2e-29 131.3 95 60.0
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 4.2e-29 131.3 95 60.0
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 4.2e-29 131.3 95 60.0
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 4.2e-29 131.3 94 59.6
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 5.5e-29 131.0 95 60.0
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 5.5e-29 131.0 95 58.9
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 5.5e-29 131.0 95 58.9
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 5.5e-29 131.0 95 58.9
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 7.2e-29 130.6 95 56.8
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.2e-28 129.8 95 60.0
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 1.6e-28 129.4 95 56.8
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 1.6e-28 129.4 94 59.6
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 1.6e-28 129.4 87 63.2
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 1.6e-28 129.4 94 58.5
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 2.1e-28 129.0 101 55.4
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 2.7e-28 128.6 95 57.9
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 4.7e-28 127.9 96 59.4
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 6.1e-28 127.5 95 56.8
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 8.0e-28 127.1 94 57.4
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 8.0e-28 127.1 87 58.6
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 1.4e-27 126.3 95 55.8
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 1.4e-27 126.3 95 57.9
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 1.8e-27 125.9 95 57.9
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 1.8e-27 125.9 95 57.9
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 1.8e-27 125.9 95 57.9
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 1.8e-27 125.9 95 56.8
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 2.3e-27 125.6 95 55.8
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 3.0e-27 125.2 92 59.8
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 3.0e-27 125.2 92 59.8
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 4.0e-27 124.8 93 55.9
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 4.0e-27 124.8 95 56.8
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 5.2e-27 124.4 95 53.7
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 5.2e-27 124.4 95 53.7
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 5.2e-27 124.4 94 57.4
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 6.7e-27 124.0 95 56.8
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 6.7e-27 124.0 95 54.7
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 2.0e-26 122.5 95 56.8
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 2.0e-26 122.5 95 56.8
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 2.6e-26 122.1 95 53.7
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 4.4e-26 121.3 95 52.6
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 4.4e-26 121.3 93 54.8
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 4.4e-26 121.3 95 53.7
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 5.7e-26 120.9 95 52.6
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 5.7e-26 120.9 95 54.7
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 1.7e-25 119.4 95 51.6
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.7e-25 119.4 95 51.6
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 1.7e-25 119.4 95 51.6
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 2.2e-25 119.0 95 51.6
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 2.8e-25 118.6 161 38.5
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 3.7e-25 118.2 95 50.5
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 8.2e-25 117.1 74 66.2
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 1.1e-24 116.7 95 48.4
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 7.0e-24 114.0 69 66.7
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 1.5e-21 106.3 72 62.5
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 5.5e-21 104.4 93 45.2
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 9.4e-21 103.6 77 59.7
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 1.2e-20 103.2 63 65.1
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.3e-17 93.2 68 57.4
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 2.8e-17 92.0 90 44.4
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 4.5e-15 84.7 63 58.7
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 5.0e-14 81.3 57 63.2
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 1.1e-13 80.1 70 50.0
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 9.5e-13 77.0 53 64.2
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 1.2e-12 76.6 53 64.2
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 2.7e-12 75.5 53 64.2
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 1.8e-11 72.8 49 65.3
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 1.8e-11 72.8 59 55.9
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 4.0e-11 71.6 53 60.4
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 1.2e-10 70.1 53 60.4
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 2.0e-10 69.3 53 50.9
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 2.6e-10 68.9 56 57.1
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 1.7e-09 66.2 45 66.7
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 1.8e-08 62.8 54 46.3
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 2.4e-08 62.4 47 57.4
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 2.4e-08 62.4 55 54.5
Cfa025682 Carpinus fangiana HOM05D004069 ORTHO05D122540 7.0e-08 60.8 85 36.5
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 2.0e-07 59.3 41 53.7


User provided reference genes

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