Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 0.0e+00 1710.7 892 100.0
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 1.5e-143 514.6 722 43.2
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 3.5e-140 503.4 865 40.7
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 5.7e-135 486.1 688 42.9
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 9.8e-135 485.3 661 44.3
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.0e-132 477.6 689 41.9
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 2.0e-132 477.6 671 43.4
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 7.8e-132 475.7 676 42.2
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 3.8e-131 473.4 671 42.2
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 7.3e-130 469.2 879 37.5
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 9.5e-130 468.8 879 37.5
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 1.2e-129 468.4 686 42.3
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 2.1e-129 467.6 667 42.4
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 3.6e-129 466.8 814 40.2
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 4.7e-129 466.5 723 41.1
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 1.4e-128 464.9 898 37.5
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 1.8e-128 464.5 669 42.5
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 1.5e-127 461.5 896 37.3
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 3.4e-127 460.3 769 39.8
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 5.8e-127 459.5 768 39.8
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 1.3e-126 458.4 676 41.0
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 3.7e-126 456.8 729 39.2
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 8.3e-126 455.7 711 40.8
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.4e-125 454.9 710 40.3
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 1.4e-125 454.9 722 39.9
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 1.8e-125 454.5 673 41.8
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 2.4e-125 454.1 662 42.4
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 3.2e-125 453.8 729 39.6
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 7.0e-125 452.6 807 39.4
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 7.0e-125 452.6 709 41.2
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 7.0e-125 452.6 689 41.1
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 2.0e-124 451.1 682 40.6
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 3.5e-124 450.3 780 39.1
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 6.0e-124 449.5 665 41.2
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 7.8e-124 449.1 855 37.3
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.7e-123 448.0 709 40.5
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 2.3e-123 447.6 738 39.4
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 2.3e-123 447.6 805 38.3
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 3.0e-123 447.2 760 38.4
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 3.0e-123 447.2 468 50.9
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 3.0e-123 447.2 853 36.7
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 6.6e-123 446.0 754 39.0
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 1.5e-122 444.9 756 39.4
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 4.3e-122 443.4 674 40.5
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 7.3e-122 442.6 856 38.0
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 1.6e-121 441.4 680 39.9
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 1.6e-121 441.4 680 41.6
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 2.8e-121 440.7 768 38.5
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 6.2e-121 439.5 697 39.3
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 8.0e-121 439.1 671 40.5
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 8.0e-121 439.1 753 38.4
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 8.0e-121 439.1 776 38.4
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 1.4e-120 438.3 673 41.8
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 1.8e-120 438.0 673 40.6
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 1.8e-120 438.0 696 39.5
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 1.8e-120 438.0 664 41.0
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 2.3e-120 437.6 778 38.0
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 3.1e-120 437.2 645 41.7
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 5.2e-120 436.4 467 49.3
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 5.2e-120 436.4 801 36.8
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 1.2e-119 435.3 694 40.2
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 2.6e-119 434.1 664 41.1
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 3.4e-119 433.7 678 39.8
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 4.4e-119 433.3 818 37.7
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 4.4e-119 433.3 674 41.4
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 9.8e-119 432.2 767 39.0
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 1.3e-118 431.8 663 39.2
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 2.2e-118 431.0 683 39.8
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 2.2e-118 431.0 683 39.8
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 2.2e-118 431.0 675 39.7
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 3.7e-118 430.3 817 37.2
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 4.9e-118 429.9 793 38.5
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 4.9e-118 429.9 642 41.4
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 8.3e-118 429.1 697 40.0
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 1.4e-117 428.3 699 39.5
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 1.4e-117 428.3 696 39.7
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 1.9e-117 427.9 686 38.3
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 1.9e-117 427.9 698 40.0
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 1.9e-117 427.9 692 38.9
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 2.4e-117 427.6 687 39.4
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 3.2e-117 427.2 670 39.6
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 3.2e-117 427.2 699 39.9
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 4.1e-117 426.8 672 40.0
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 7.0e-117 426.0 674 39.9
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 7.0e-117 426.0 556 44.2
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 7.8e-116 422.5 331 65.3
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 1.7e-115 421.4 696 39.5
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 2.3e-115 421.0 820 36.2
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 2.3e-115 421.0 472 48.1
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 3.0e-115 420.6 673 39.4
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 3.9e-115 420.2 811 36.0
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 3.9e-115 420.2 673 39.7
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 5.0e-115 419.9 673 39.7
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 5.0e-115 419.9 673 39.7
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 5.0e-115 419.9 876 34.1
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 6.6e-115 419.5 674 38.9
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 6.6e-115 419.5 692 39.0
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 6.6e-115 419.5 793 36.7
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 6.6e-115 419.5 475 48.4
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 8.6e-115 419.1 677 39.1
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 8.6e-115 419.1 820 37.7
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 1.1e-114 418.7 683 38.9
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 1.1e-114 418.7 803 37.6
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 1.9e-114 417.9 691 38.8
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 5.6e-114 416.4 468 48.3
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 5.6e-114 416.4 692 39.5
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 7.3e-114 416.0 782 35.8
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 9.5e-114 415.6 470 48.7
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 8.1e-113 412.5 673 39.5
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 8.9e-112 409.1 724 36.7
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 1.2e-111 408.7 686 37.8
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 1.2e-111 408.7 697 37.9
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 1.5e-111 408.3 685 38.5
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 1.3e-110 405.2 792 37.9
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 2.9e-110 404.1 671 38.7
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 3.7e-110 403.7 666 39.5
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 2.4e-109 401.0 678 37.6
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 1.5e-106 391.7 664 38.9
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 1.9e-106 391.3 677 37.5
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 1.8e-104 384.8 823 35.0
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 6.6e-99 366.3 268 66.8
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 6.6e-99 366.3 268 66.8
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 2.4e-96 357.8 665 35.3
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 7.1e-85 319.7 683 33.5
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 3.5e-84 317.4 742 32.5
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 2.5e-82 311.2 876 31.4
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 6.9e-80 303.1 694 34.9
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 5.5e-77 293.5 679 34.5
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 2.5e-74 284.6 206 68.0
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 4.2e-69 267.3 622 32.6
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 1.7e-49 202.2 177 59.9
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 9.7e-34 149.8 154 54.5
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 4.8e-33 147.5 90 78.9
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 1.7e-30 139.0 440 27.7
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 2.0e-26 125.6 555 25.4
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 2.8e-25 121.7 572 25.9
MCO11G516 Micromonas commoda HOM05D004562 ORTHO05D005435 3.7e-25 121.3 392 30.9
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.4e-24 119.4 470 27.0
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 4.1e-24 117.9 158 46.2
SHI19075 Sapria himalayana HOM05D004562 ORTHO05D005435 9.5e-21 106.7 94 53.2
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 1.4e-16 92.8 137 35.8
CAN.G22.26 Capsicum annuum HOM05D001423 ORTHO05D001412 6.1e-12 77.4 67 52.2


User provided reference genes

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