Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0118s0034 Marchantia polymorpha HOM05D003505 ORTHO05D002366 1.2e-294 1015.8 531 100.0
HanXRQChr06g0168871 Helianthus annuus HOM05D003505 ORTHO05D002366 2.6e-10 71.2 81 45.7
SGA_v2.0_scaffold153G36953 Striga asiatica HOM05D003505 ORTHO05D002366 3.4e-10 70.9 49 55.1
HanXRQChr04g0123431 Helianthus annuus HOM05D003505 ORTHO05D002366 7.6e-10 69.7 79 43.0
SGA_v2.0_scaffold52G19189 Striga asiatica HOM05D003505 ORTHO05D002366 2.2e-09 68.2 49 55.1
Actinidia22774 Actinidia chinensis HOM05D003505 ORTHO05D002366 3.8e-09 67.4 59 50.8
Actinidia22828 Actinidia chinensis HOM05D003505 ORTHO05D002366 3.8e-09 67.4 59 50.8
Sed0013944 Sechium edule HOM05D007577 ORTHO05D002366 6.5e-09 66.6 78 43.6
CSS0005332 Camellia sinensis var. sinensis HOM05D003505 ORTHO05D002366 8.4e-09 66.2 79 41.8
Hma1.2p1_0341F.1_g130320 Hydrangea macrophylla HOM05D003505 ORTHO05D002366 8.4e-09 66.2 63 46.0
Sopen10g008430 Solanum pennellii HOM05D003505 ORTHO05D002366 8.4e-09 66.2 51 52.9
Peaxi162Scf01068g00019 Petunia axillaris HOM05D003505 ORTHO05D002366 1.1e-08 65.9 79 41.8
SMO274G0065 Selaginella moellendorffii HOM05D003505 ORTHO05D002366 1.1e-08 65.9 75 46.7
CiPaw.13G030800 Carya illinoinensis HOM05D003505 ORTHO05D002366 1.4e-08 65.5 79 44.3
Actinidia12174 Actinidia chinensis HOM05D003505 ORTHO05D002366 2.5e-08 64.7 59 49.2
CANSAT21G1307 Cannabis sativa HOM05D003505 ORTHO05D002366 2.5e-08 64.7 83 39.8
QL04p035739 Quercus lobata HOM05D003505 ORTHO05D002366 2.5e-08 64.7 65 46.2
Lsat_1_v5_gn_4_44241 Lactuca sativa HOM05D003505 ORTHO05D002366 3.2e-08 64.3 73 41.1
Lj9A562T33 Lonicera japonica HOM05D003505 ORTHO05D002366 3.2e-08 64.3 84 39.3
SalBow5G3293 Salvia bowleyana HOM05D003505 ORTHO05D002366 3.2e-08 64.3 78 39.7
PGSC0003DMG400011758 Solanum tuberosum HOM05D003505 ORTHO05D002366 3.2e-08 64.3 49 53.1
unitig_26.g8880 Utricularia gibba HOM05D003505 ORTHO05D002366 3.2e-08 64.3 70 45.7
vmacro21310 Vaccinium macrocarpon HOM05D007577 ORTHO05D002366 3.2e-08 64.3 69 42.0
Cfa011133 Carpinus fangiana HOM05D003505 ORTHO05D002366 4.2e-08 63.9 63 46.0
Haze_02729 Corylus avellana HOM05D003505 ORTHO05D002366 4.2e-08 63.9 63 46.0
HanXRQChr16g0519671 Helianthus annuus HOM05D003505 ORTHO05D002366 4.2e-08 63.9 63 44.4
Solyc10g018640.2 Solanum lycopersicum HOM05D003505 ORTHO05D002366 4.2e-08 63.9 49 53.1
CAN.G412.3 Capsicum annuum HOM05D003505 ORTHO05D002366 5.5e-08 63.5 101 34.7
Lj3g0023797 Lotus japonicus HOM05D003505 ORTHO05D002366 5.5e-08 63.5 54 50.0
Lalb_Chr19g0127471 Lupinus albus HOM05D003505 ORTHO05D002366 5.5e-08 63.5 64 45.3
Nitab4.5_0001823g0040 Nicotiana tabacum HOM05D003505 ORTHO05D002366 5.5e-08 63.5 70 41.4
TPR.G28736 Trifolium pratense HOM05D003505 ORTHO05D002366 5.5e-08 63.5 54 50.0
CAN.G899.16 Capsicum annuum HOM05D003505 ORTHO05D002366 7.1e-08 63.2 66 43.9
DCAR_025090 Daucus carota HOM05D003505 ORTHO05D002366 7.1e-08 63.2 92 35.9
SMO367G0729 Selaginella moellendorffii HOM05D003505 ORTHO05D002366 7.1e-08 63.2 102 37.3
unitig_76.g29077 Utricularia gibba HOM05D003505 ORTHO05D002366 7.1e-08 63.2 59 45.8
Zm00001eb401520 Zea mays HOM05D007577 ORTHO05D002366 7.1e-08 63.2 84 41.7
Ca_07813_v3 Cicer arietinum L. HOM05D003505 ORTHO05D002366 9.3e-08 62.8 49 53.1
Cc02_g24570 Coffea canephora HOM05D003505 ORTHO05D002366 9.3e-08 62.8 80 40.0
Gohir.A07G147600 Gossypium hirsutum HOM05D003505 ORTHO05D002366 9.3e-08 62.8 70 44.3
Lalb_Chr01g0021501 Lupinus albus HOM05D003505 ORTHO05D002366 9.3e-08 62.8 64 45.3
Medtr8g005880 Medicago truncatula HOM05D003505 ORTHO05D002366 9.3e-08 62.8 85 37.6
Nitab4.5_0000706g0170 Nicotiana tabacum HOM05D003505 ORTHO05D002366 9.3e-08 62.8 70 41.4
Prupe.2G135200 Prunus persica HOM05D003505 ORTHO05D002366 9.3e-08 62.8 58 48.3
Rhsim06G0074200 Rhododendron simsii HOM05D004661 ORTHO05D005827 9.3e-08 62.8 56 46.4
Zm00001eb006590 Zea mays HOM05D007577 ORTHO05D002366 9.3e-08 62.8 85 41.2
arahy.Tifrunner.gnm1.ann1.ZUXP3H Arachis hypogaea HOM05D003505 ORTHO05D002366 1.2e-07 62.4 71 45.1
CSS0026198 Camellia sinensis var. sinensis HOM05D003505 ORTHO05D002366 1.2e-07 62.4 79 41.8
CSS0041341 Camellia sinensis var. sinensis HOM05D003505 ORTHO05D002366 1.2e-07 62.4 79 41.8
Cpa.g.sc149.19 Carica papaya HOM05D003505 ORTHO05D002366 1.2e-07 62.4 79 40.5
CsaV3_6G009110 Cucumis sativus L. HOM05D003505 ORTHO05D002366 1.2e-07 62.4 64 43.8
Lj1g0012963 Lotus japonicus HOM05D003505 ORTHO05D002366 1.2e-07 62.4 65 44.6
Lalb_Chr03g0039921 Lupinus albus HOM05D003505 ORTHO05D002366 1.2e-07 62.4 49 53.1
MD07G1111800 Malus domestica HOM05D003505 ORTHO05D002366 1.2e-07 62.4 69 44.9
Rhsim07G0032600 Rhododendron simsii HOM05D003505 ORTHO05D002366 1.2e-07 62.4 59 47.5
Solyc01g090740.3 Solanum lycopersicum HOM05D003505 ORTHO05D002366 1.2e-07 62.4 49 53.1
PGSC0003DMG400025978 Solanum tuberosum HOM05D003505 ORTHO05D002366 1.2e-07 62.4 49 53.1
TAR375G0757 Trochodendron aralioides HOM05D003505 ORTHO05D002366 1.2e-07 62.4 77 39.0
Actinidia10365 Actinidia chinensis HOM05D007577 ORTHO05D002366 1.6e-07 62.0 66 43.9
Aa31LG10G14800 Aethionema arabicum HOM05D003505 ORTHO05D002366 1.6e-07 62.0 54 50.0
Aqoxy5G03859 Aquilegia oxysepala HOM05D003505 ORTHO05D002366 1.6e-07 62.0 46 56.5
CiPaw.14G024300 Carya illinoinensis HOM05D003505 ORTHO05D002366 1.6e-07 62.0 67 43.3
MELO3C005964.2 Cucumis melo HOM05D003505 ORTHO05D002366 1.6e-07 62.0 89 41.6
DCAR_031871 Daucus carota HOM05D003505 ORTHO05D002366 1.6e-07 62.0 76 40.8
Dinv43655 Davidia involucrata HOM05D003505 ORTHO05D002366 1.6e-07 62.0 79 41.8
Glyma.03G117800 Glycine max HOM05D003505 ORTHO05D002366 1.6e-07 62.0 49 53.1
Gohir.A08G137500 Gossypium hirsutum HOM05D003505 ORTHO05D002366 1.6e-07 62.0 74 44.6
Gohir.D08G158600 Gossypium hirsutum HOM05D003505 ORTHO05D002366 1.6e-07 62.0 74 44.6
Gorai.004G164800 Gossypium raimondii HOM05D003505 ORTHO05D002366 1.6e-07 62.0 74 44.6
Manes.05G050600 Manihot esculenta HOM05D003505 ORTHO05D002366 1.6e-07 62.0 79 39.2
SEGI_19925 Sequoiadendron giganteum HOM05D003505 ORTHO05D002366 1.6e-07 62.0 49 53.1
Sopen01g036470 Solanum pennellii HOM05D003505 ORTHO05D002366 1.6e-07 62.0 65 43.1
THA.LOC104817209 Tarenaya hassleriana HOM05D003505 ORTHO05D002366 1.6e-07 62.0 52 48.1
GSVIVG01018208001 Vitis vinifera HOM05D003505 ORTHO05D002366 1.6e-07 62.0 79 39.2
CDE05G1434 Ceratophyllum demersum HOM05D020288 ORTHO05D019556 2.1e-07 61.6 71 46.5
Glyma.07G109200 Glycine max HOM05D003505 ORTHO05D002366 2.1e-07 61.6 49 53.1
MBI04_g09513_MAGBIO Magnolia biondii HOM05D003505 ORTHO05D002366 2.1e-07 61.6 78 41.0
Oeu009617.1 Olea europaea HOM05D003505 ORTHO05D002366 2.1e-07 61.6 77 37.7
Oeu009618.1 Olea europaea HOM05D003505 ORTHO05D002366 2.1e-07 61.6 77 37.7
Oeu051914.1 Olea europaea HOM05D003505 ORTHO05D002366 2.1e-07 61.6 59 45.8
Phvul.008G156800 Phaseolus vulgaris HOM05D003505 ORTHO05D002366 2.1e-07 61.6 49 53.1
arahy.Tifrunner.gnm1.ann1.BCD3BN Arachis hypogaea HOM05D003505 ORTHO05D002366 2.7e-07 61.2 54 48.1
MSTRG.17152 Avicennia marina HOM05D003505 ORTHO05D002366 2.7e-07 61.2 75 41.3
CDE02G0489 Ceratophyllum demersum HOM05D000159 ORTHO05D000148 2.7e-07 61.2 51 52.9
COL.COLO4_12464 Corchorus olitorius HOM05D003505 ORTHO05D002366 2.7e-07 61.2 65 43.1
Gohir.D12G098400 Gossypium hirsutum HOM05D003505 ORTHO05D002366 2.7e-07 61.2 64 45.3
TPR.G39106 Trifolium pratense HOM05D003505 ORTHO05D002366 2.7e-07 61.2 64 43.8
Duzib138G0639 Durio zibethinus HOM05D003505 ORTHO05D002366 3.5e-07 60.8 79 41.8
FAN03G2272 Fragaria x ananassa HOM05D003505 ORTHO05D002366 3.5e-07 60.8 53 50.9
FAN03G3486 Fragaria x ananassa HOM05D003505 ORTHO05D002366 3.5e-07 60.8 53 50.9
FAN10G2627 Fragaria x ananassa HOM05D003505 ORTHO05D002366 3.5e-07 60.8 53 50.9
Gorai.001G175800 Gossypium raimondii HOM05D003505 ORTHO05D002366 3.5e-07 60.8 80 38.8
Phvul.010G056400 Phaseolus vulgaris HOM05D003505 ORTHO05D002366 3.5e-07 60.8 49 51.0
FvH4_7g10710 Fragaria vesca HOM05D003505 ORTHO05D002366 4.6e-07 60.5 53 50.9
FAN01G1637 Fragaria x ananassa HOM05D003505 ORTHO05D002366 4.6e-07 60.5 53 50.9
FAN06G1069 Fragaria x ananassa HOM05D003505 ORTHO05D002366 4.6e-07 60.5 53 50.9
FAN06G2523 Fragaria x ananassa HOM05D003505 ORTHO05D002366 4.6e-07 60.5 53 50.9
Nn1g00971 Nelumbo nucifera HOM05D003505 ORTHO05D002366 4.6e-07 60.5 79 39.2
RcHm_v2.0_Chr1g0348651 Rosa chinensis HOM05D003505 ORTHO05D002366 4.6e-07 60.5 53 50.9
Thecc.01G386300 Theobroma cacao HOM05D003505 ORTHO05D002366 4.6e-07 60.5 79 40.5
Atru.chr5.213 Acer truncatum HOM05D003505 ORTHO05D002366 6.0e-07 60.1 79 40.5
CsaV3_3G007420 Cucumis sativus L. HOM05D003505 ORTHO05D002366 6.0e-07 60.1 89 40.4
Os03g0187400 Oryza sativa ssp. japonica HOM05D007577 ORTHO05D002366 6.0e-07 60.1 46 54.3
PSO063G1028 Papaver somniferum HOM05D003505 ORTHO05D002366 6.0e-07 60.1 53 47.2
PGR042G1548 Punica granatum HOM05D003505 ORTHO05D002366 6.0e-07 60.1 59 45.8
VMungo1383G1044 Vigna mungo HOM05D003505 ORTHO05D002366 6.0e-07 60.1 70 41.4
arahy.Tifrunner.gnm1.ann1.4HJ0IT Arachis hypogaea HOM05D003505 ORTHO05D002366 7.9e-07 59.7 77 39.0
Gohir.D07G153700 Gossypium hirsutum HOM05D003505 ORTHO05D002366 7.9e-07 59.7 70 42.9
Medtr7g445390 Medicago truncatula HOM05D003505 ORTHO05D002366 7.9e-07 59.7 64 42.2
Os04g0450000 Oryza sativa ssp. japonica HOM05D007577 ORTHO05D002366 7.9e-07 59.7 59 49.2
PSO832G0403 Papaver somniferum HOM05D003505 ORTHO05D002366 7.9e-07 59.7 80 38.8
Sp5g02700 Schrenkiella parvula HOM05D003505 ORTHO05D002366 7.9e-07 59.7 56 48.2
SEGI_38843 Sequoiadendron giganteum HOM05D003505 ORTHO05D002366 7.9e-07 59.7 49 51.0
MSTRG.24626 Avicennia marina HOM05D007577 ORTHO05D002366 1.0e-06 59.3 59 44.1
Ciclev10022623m.g Citrus clementina HOM05D003505 ORTHO05D002366 1.0e-06 59.3 79 40.5
MELO3C000279.2 Cucumis melo HOM05D003505 ORTHO05D002366 1.0e-06 59.3 70 38.6
Dinv44107 Davidia involucrata HOM05D003505 ORTHO05D002366 1.0e-06 59.3 79 39.2
Duzib133G1117 Durio zibethinus HOM05D003505 ORTHO05D002366 1.0e-06 59.3 79 40.5
ECA236G2569 Erigeron canadensis HOM05D003505 ORTHO05D002366 1.0e-06 59.3 69 44.9
Glyma.11G165291 Glycine max HOM05D003505 ORTHO05D002366 1.0e-06 59.3 80 40.0
Gohir.A12G095800 Gossypium hirsutum HOM05D003505 ORTHO05D002366 1.0e-06 59.3 64 45.3
Potri.002G142600 Populus trichocarpa HOM05D003505 ORTHO05D002366 1.0e-06 59.3 81 40.7
Sabra02G0110900 Salix brachista HOM05D003505 ORTHO05D002366 1.0e-06 59.3 81 40.7
SEGI_22776 Sequoiadendron giganteum HOM05D003505 ORTHO05D002366 1.0e-06 59.3 49 51.0
Zm00001eb429690 Zea mays HOM05D003505 ORTHO05D002366 1.0e-06 59.3 75 40.0
Ciclev10002010m.g Citrus clementina HOM05D007577 ORTHO05D002366 1.3e-06 58.9 68 39.7
Gorai.008G107200 Gossypium raimondii HOM05D003505 ORTHO05D002366 1.3e-06 58.9 64 43.8
PSO541G0756 Papaver somniferum HOM05D007577 ORTHO05D002366 1.3e-06 58.9 47 55.3
Sc02g0002860 Simmondsia chinensis HOM05D003505 ORTHO05D002366 1.3e-06 58.9 78 37.2
Sc26g0000220 Simmondsia chinensis HOM05D007577 ORTHO05D002366 1.3e-06 58.9 76 42.1
Zm00001eb074720 Zea mays HOM05D003505 ORTHO05D002366 1.3e-06 58.9 68 41.2
ATR0317G107 Amborella trichopoda HOM05D003505 ORTHO05D002366 1.8e-06 58.5 46 50.0
DCAR_025091 Daucus carota HOM05D003505 ORTHO05D002366 1.8e-06 58.5 63 41.3
Psat3g154600 Pisum sativum HOM05D003505 ORTHO05D002366 1.8e-06 58.5 79 38.0
Hund27003 Selenicereus undatus HOM05D007577 ORTHO05D002366 1.8e-06 58.5 55 47.3
vmacro13460 Vaccinium macrocarpon HOM05D003505 ORTHO05D002366 1.8e-06 58.5 70 40.0
HPP92_027433 Vanilla planifolia HOM05D003505 ORTHO05D002366 1.8e-06 58.5 105 33.3
AT3G60520 Arabidopsis thaliana HOM05D003505 ORTHO05D002366 2.3e-06 58.2 54 48.1
arahy.Tifrunner.gnm1.ann1.YG9RMG Arachis hypogaea HOM05D003505 ORTHO05D002366 2.3e-06 58.2 77 37.7
CARHR170920 Cardamine hirsuta HOM05D003505 ORTHO05D002366 2.3e-06 58.2 54 48.1
ClCG05G000270 Citrullus lanatus HOM05D003505 ORTHO05D002366 2.3e-06 58.2 61 42.6
PGR004G0574 Punica granatum HOM05D003505 ORTHO05D002366 2.3e-06 58.2 74 40.5
Sabra14G0042500 Salix brachista HOM05D003505 ORTHO05D002366 2.3e-06 58.2 81 39.5
TWI23G0353 Tripterygium wilfordii HOM05D003505 ORTHO05D002366 2.3e-06 58.2 70 40.0
MSTRG.20718 Avicennia marina HOM05D003505 ORTHO05D002366 3.0e-06 57.8 49 46.9
C08p35500 Brassica napus HOM05D003505 ORTHO05D002366 3.0e-06 57.8 54 48.1
Nn1g05500 Nelumbo nucifera HOM05D007577 ORTHO05D002366 3.0e-06 57.8 77 39.0
TAR628G0666 Trochodendron aralioides HOM05D007577 ORTHO05D002366 3.0e-06 57.8 58 44.8
BraA07t30155Z Brassica rapa HOM05D003505 ORTHO05D002366 3.9e-06 57.4 67 43.3
Migut.N01762 Erythranthe guttata HOM05D003505 ORTHO05D002366 3.9e-06 57.4 98 34.7
Glyma.01G076200 Glycine max HOM05D003505 ORTHO05D002366 3.9e-06 57.4 80 38.8
MBI06_g18795_MAGBIO Magnolia biondii HOM05D007577 ORTHO05D002366 3.9e-06 57.4 53 50.9
Nitab4.5_0001507g0070 Nicotiana tabacum HOM05D007577 ORTHO05D002366 3.9e-06 57.4 77 39.0
Os02g0658200 Oryza sativa ssp. japonica HOM05D003505 ORTHO05D002366 3.9e-06 57.4 52 46.2
Sed0026157 Sechium edule HOM05D003505 ORTHO05D002366 3.9e-06 57.4 49 49.0
TWI59G1259 Tripterygium wilfordii HOM05D003505 ORTHO05D002366 3.9e-06 57.4 49 49.0
BcaC08g45070 Brassica carinata HOM05D003505 ORTHO05D002366 5.1e-06 57.0 54 48.1
C06p26790 Brassica napus HOM05D003505 ORTHO05D002366 5.1e-06 57.0 54 48.1
Potri.014G058300 Populus trichocarpa HOM05D003505 ORTHO05D002366 5.1e-06 57.0 81 39.5
SMO364G0458 Selaginella moellendorffii HOM05D003505 ORTHO05D002366 5.1e-06 57.0 50 48.0
SEGI_11478 Sequoiadendron giganteum HOM05D003505 ORTHO05D002366 5.1e-06 57.0 48 52.1
HanXRQChr03g0093301 Helianthus annuus HOM05D003505 ORTHO05D002366 6.7e-06 56.6 74 41.9
Mapoly0003s0174 Marchantia polymorpha HOM05D035547 ORTHO05D002366 6.7e-06 56.6 89 36.0
SalBow3G1297 Salvia bowleyana HOM05D007577 ORTHO05D002366 6.7e-06 56.6 47 48.9
SEGI_29775 Sequoiadendron giganteum HOM05D003505 ORTHO05D002366 6.7e-06 56.6 46 47.8
Solyc04g076010.3 Solanum lycopersicum HOM05D007577 ORTHO05D002366 6.7e-06 56.6 47 51.1
Aa31LG1G11400 Aethionema arabicum HOM05D003505 ORTHO05D002366 8.7e-06 56.2 46 47.8
ATR0006G064 Amborella trichopoda HOM05D003505 ORTHO05D019556 8.7e-06 56.2 47 53.2
AL5G42820 Arabidopsis lyrata HOM05D003505 ORTHO05D002366 8.7e-06 56.2 78 39.7
A09p52760 Brassica napus HOM05D003505 ORTHO05D002366 8.7e-06 56.2 78 38.5
Cc10_g15550 Coffea canephora HOM05D007577 ORTHO05D002366 8.7e-06 56.2 83 39.8
Lsat_1_v5_gn_1_2280 Lactuca sativa HOM05D007577 ORTHO05D002366 8.7e-06 56.2 47 51.1
Nn5g29944 Nelumbo nucifera HOM05D007577 ORTHO05D002366 8.7e-06 56.2 47 51.1
Oeu000042.1 Olea europaea HOM05D003505 ORTHO05D002366 8.7e-06 56.2 59 45.8
SEGI_16387 Sequoiadendron giganteum HOM05D020288 ORTHO05D019556 8.7e-06 56.2 54 46.3


User provided reference genes

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