Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 6.9e-116 420.6 209 100.0
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 2.8e-64 249.2 213 58.2
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 2.6e-62 242.7 209 61.2
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 9.8e-62 240.7 196 59.7
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 3.2e-60 235.7 212 55.2
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 5.4e-60 235.0 213 55.4
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 1.6e-59 233.4 214 55.6
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 1.6e-59 233.4 213 54.5
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 2.1e-59 233.0 213 54.5
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 2.1e-59 233.0 212 54.2
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 2.7e-59 232.6 213 55.4
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 2.7e-59 232.6 213 55.4
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 3.5e-59 232.3 214 55.6
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 3.5e-59 232.3 210 56.7
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 4.6e-59 231.9 214 54.2
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 6.0e-59 231.5 211 55.9
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 7.8e-59 231.1 214 53.7
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 7.8e-59 231.1 214 55.1
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 1.7e-58 229.9 213 54.0
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 2.3e-58 229.6 212 56.1
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 3.0e-58 229.2 214 54.7
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 3.9e-58 228.8 213 54.5
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 3.9e-58 228.8 207 57.5
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 5.1e-58 228.4 214 55.1
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 6.6e-58 228.0 214 52.3
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 6.6e-58 228.0 214 53.7
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 1.5e-57 226.9 214 55.1
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 1.5e-57 226.9 214 53.3
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 2.5e-57 226.1 210 55.7
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 3.3e-57 225.7 214 54.2
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 4.3e-57 225.3 212 53.3
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 4.3e-57 225.3 212 53.3
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 4.3e-57 225.3 214 52.3
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 4.3e-57 225.3 212 53.3
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 4.3e-57 225.3 213 55.9
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 5.6e-57 224.9 212 52.8
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 5.6e-57 224.9 212 53.8
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 5.6e-57 224.9 214 52.8
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 7.3e-57 224.6 211 54.5
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 1.2e-56 223.8 214 52.8
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 1.6e-56 223.4 214 52.3
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 2.1e-56 223.0 212 52.4
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 3.6e-56 222.2 214 52.8
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 3.6e-56 222.2 215 53.5
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 4.7e-56 221.9 214 51.4
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 4.7e-56 221.9 214 52.8
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 6.2e-56 221.5 212 51.4
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 6.2e-56 221.5 215 53.0
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 8.1e-56 221.1 212 52.8
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 8.1e-56 221.1 214 53.7
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 1.1e-55 220.7 212 52.4
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 1.1e-55 220.7 212 52.4
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 1.4e-55 220.3 212 51.9
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 1.4e-55 220.3 212 53.8
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 1.4e-55 220.3 215 53.0
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 1.4e-55 220.3 214 53.3
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 1.8e-55 219.9 212 51.9
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 2.3e-55 219.5 212 51.9
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 3.1e-55 219.2 212 52.4
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 3.1e-55 219.2 212 51.4
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 3.1e-55 219.2 211 50.7
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 3.1e-55 219.2 211 51.7
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 3.1e-55 219.2 213 53.1
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 3.1e-55 219.2 213 53.1
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 4.0e-55 218.8 214 51.4
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 4.0e-55 218.8 212 52.8
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 4.0e-55 218.8 209 53.6
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 5.2e-55 218.4 212 52.4
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 5.2e-55 218.4 212 52.4
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 5.2e-55 218.4 212 52.4
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 5.2e-55 218.4 214 52.8
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 6.8e-55 218.0 212 52.4
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 6.8e-55 218.0 212 52.8
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 6.8e-55 218.0 212 52.8
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 6.8e-55 218.0 214 51.9
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 8.9e-55 217.6 212 51.4
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 8.9e-55 217.6 212 51.4
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 8.9e-55 217.6 211 52.1
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 1.2e-54 217.2 212 51.4
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 1.2e-54 217.2 211 52.6
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 1.2e-54 217.2 212 52.8
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 2.0e-54 216.5 211 51.7
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 3.4e-54 215.7 235 47.7
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 3.4e-54 215.7 211 51.7
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 3.4e-54 215.7 215 50.7
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 3.4e-54 215.7 211 52.1
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 4.4e-54 215.3 212 52.4
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 4.4e-54 215.3 216 51.4
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 9.9e-54 214.2 209 51.7
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 9.9e-54 214.2 211 52.1
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 1.7e-53 213.4 212 52.8
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 3.7e-53 212.2 215 49.8
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 4.9e-53 211.8 214 49.5
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 4.9e-53 211.8 212 51.9
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 4.9e-53 211.8 212 52.4
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 6.4e-53 211.5 215 50.2
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 6.4e-53 211.5 208 52.4
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 8.3e-53 211.1 222 50.5
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 8.3e-53 211.1 209 51.2
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 8.3e-53 211.1 204 51.0
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 8.3e-53 211.1 214 51.4
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 1.1e-52 210.7 213 51.6
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 1.1e-52 210.7 210 54.3
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 1.1e-52 210.7 213 51.6
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 1.1e-52 210.7 208 51.0
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 1.4e-52 210.3 211 52.1
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 3.2e-52 209.1 215 50.2
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 4.1e-52 208.8 210 52.4
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 4.1e-52 208.8 210 53.3
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 9.2e-52 207.6 209 49.8
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 9.2e-52 207.6 209 50.2
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 2.1e-51 206.5 208 51.0
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 2.7e-51 206.1 213 51.2
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 7.8e-51 204.5 214 48.6
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 1.3e-50 203.8 213 50.7
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 1.7e-50 203.4 214 51.4
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 1.9e-49 199.9 212 50.5
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 9.5e-49 197.6 216 47.7
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 1.6e-48 196.8 213 49.3
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 2.8e-48 196.1 214 50.9
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 6.2e-48 194.9 201 50.2
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 8.1e-48 194.5 214 48.6
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 6.8e-47 191.4 265 41.5
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 2.0e-38 163.3 149 55.0
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 2.2e-37 159.8 156 50.0
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 6.4e-37 158.3 214 43.0
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 7.1e-36 154.8 146 53.4
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 7.1e-36 154.8 150 52.0
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 7.8e-35 151.4 136 56.6
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.0e-34 151.0 153 51.0
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.6e-32 143.7 158 49.4
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 2.8e-32 142.9 138 52.9
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 9.3e-28 127.9 200 38.5
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 3.5e-27 125.9 126 51.6
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 4.6e-27 125.6 197 40.1
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 1.8e-23 113.6 204 36.3
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 4.2e-20 102.4 191 34.0
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 6.0e-19 98.6 116 46.6
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 1.6e-16 90.5 76 55.3
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 2.2e-13 80.1 101 44.6
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 9.3e-12 74.7 94 44.7
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 6.1e-11 72.0 70 52.9
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 1.3e-10 70.9 69 49.3
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 3.9e-10 69.3 60 55.0
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 6.7e-10 68.6 123 36.6
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 1.5e-09 67.4 66 53.0


User provided reference genes

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