Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 2.2e-106 389.0 203 100.0
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 4.9e-58 228.4 210 64.8
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 4.2e-57 225.3 203 64.0
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 7.6e-51 204.5 145 71.7
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 7.1e-49 198.0 147 68.0
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 3.0e-39 166.0 146 56.2
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 7.4e-38 161.4 157 53.5
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 9.6e-38 161.0 131 57.3
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 9.6e-38 161.0 131 57.3
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 1.6e-37 160.2 151 55.0
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 1.6e-37 160.2 151 55.0
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 2.1e-37 159.8 131 57.3
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 2.1e-37 159.8 122 60.7
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.8e-37 159.5 166 50.6
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.8e-37 159.5 153 52.3
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 2.8e-37 159.5 137 54.7
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 4.8e-37 158.7 206 42.7
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 6.2e-37 158.3 149 52.3
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 8.1e-37 157.9 151 52.3
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 8.1e-37 157.9 214 45.3
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 8.1e-37 157.9 131 57.3
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.1e-36 157.5 151 54.3
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 1.1e-36 157.5 146 52.7
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 1.1e-36 157.5 161 50.9
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 1.1e-36 157.5 127 59.8
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 1.4e-36 157.1 106 67.0
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 1.4e-36 157.1 161 50.3
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 1.4e-36 157.1 153 52.9
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 1.8e-36 156.8 146 52.1
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.8e-36 156.8 112 63.4
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 5.3e-36 155.2 150 52.0
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 5.3e-36 155.2 182 46.7
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 5.3e-36 155.2 113 62.8
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 6.9e-36 154.8 151 52.3
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 6.9e-36 154.8 150 54.0
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 6.9e-36 154.8 168 48.8
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 9.0e-36 154.5 106 67.0
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 9.0e-36 154.5 106 67.0
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 9.0e-36 154.5 106 66.0
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 9.0e-36 154.5 151 52.3
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 9.0e-36 154.5 151 52.3
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 9.0e-36 154.5 151 52.3
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 9.0e-36 154.5 151 52.3
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 9.0e-36 154.5 124 59.7
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 9.0e-36 154.5 106 65.1
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 9.0e-36 154.5 112 62.5
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 9.0e-36 154.5 150 53.3
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 9.0e-36 154.5 113 61.9
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 9.0e-36 154.5 106 67.0
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 9.0e-36 154.5 112 63.4
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 9.0e-36 154.5 112 63.4
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 9.0e-36 154.5 106 66.0
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.2e-35 154.1 106 64.2
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.2e-35 154.1 160 51.9
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 1.2e-35 154.1 169 48.5
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 1.2e-35 154.1 169 48.5
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 1.2e-35 154.1 188 46.3
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 1.5e-35 153.7 150 52.7
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 1.5e-35 153.7 160 50.0
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 1.5e-35 153.7 160 50.0
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 1.5e-35 153.7 112 61.6
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 1.5e-35 153.7 137 55.5
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 1.5e-35 153.7 134 57.5
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 1.5e-35 153.7 131 55.0
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 2.0e-35 153.3 106 67.0
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 2.0e-35 153.3 118 61.0
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.0e-35 153.3 118 61.0
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.0e-35 153.3 118 61.0
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 2.0e-35 153.3 137 56.2
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 2.0e-35 153.3 107 67.3
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 2.0e-35 153.3 131 55.0
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 2.6e-35 152.9 158 50.6
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.6e-35 152.9 106 66.0
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.6e-35 152.9 113 62.8
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.6e-35 152.9 106 66.0
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 2.6e-35 152.9 106 66.0
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 2.6e-35 152.9 131 55.7
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 2.6e-35 152.9 131 55.7
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 3.4e-35 152.5 112 60.7
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 3.4e-35 152.5 118 59.3
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 3.4e-35 152.5 113 61.1
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 3.4e-35 152.5 115 60.9
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 3.4e-35 152.5 106 64.2
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 4.5e-35 152.1 112 61.6
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 4.5e-35 152.1 112 60.7
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 4.5e-35 152.1 160 48.8
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 4.5e-35 152.1 137 55.5
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 5.8e-35 151.8 112 62.5
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 5.8e-35 151.8 112 62.5
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 5.8e-35 151.8 153 54.2
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 1.0e-34 151.0 113 60.2
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 1.3e-34 150.6 131 53.4
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 1.7e-34 150.2 131 53.4
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 1.7e-34 150.2 120 59.2
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 2.2e-34 149.8 112 59.8
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 2.2e-34 149.8 151 51.0
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 2.2e-34 149.8 112 60.7
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 2.9e-34 149.4 131 54.2
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 3.8e-34 149.1 115 59.1
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 4.9e-34 148.7 106 62.3
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 4.9e-34 148.7 112 59.8
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 4.9e-34 148.7 115 60.0
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 4.9e-34 148.7 118 60.2
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 6.5e-34 148.3 118 60.2
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 8.4e-34 147.9 106 62.3
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 8.4e-34 147.9 140 50.0
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 8.4e-34 147.9 115 59.1
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.1e-33 147.5 160 50.0
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.1e-33 147.5 160 50.0
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.1e-33 147.5 160 50.0
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 1.1e-33 147.5 131 53.4
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 1.1e-33 147.5 106 62.3
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.1e-33 147.5 112 58.0
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 2.5e-33 146.4 144 49.3
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 2.5e-33 146.4 113 57.5
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 3.2e-33 146.0 186 43.0
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 4.2e-33 145.6 131 51.9
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 2.1e-32 143.3 108 60.2
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 3.5e-32 142.5 143 51.7
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 3.5e-32 142.5 164 44.5
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 1.3e-31 140.6 97 66.0
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 5.1e-31 138.7 100 62.0
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 1.5e-30 137.1 134 49.3
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 2.5e-30 136.3 102 58.8
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 5.7e-30 135.2 184 41.8
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 7.4e-30 134.8 143 45.5
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 7.4e-30 134.8 143 45.5
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 9.6e-30 134.4 112 58.0
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 5.3e-28 128.6 151 43.7
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 2.2e-26 123.2 90 60.0
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.9e-26 122.9 175 42.3
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 4.2e-25 119.0 182 42.3
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 1.0e-23 114.4 106 52.8
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 4.3e-22 109.0 76 64.5
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 2.2e-21 106.7 235 31.1
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 2.0e-19 100.1 154 39.6
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 6.5e-18 95.1 67 64.2
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 6.5e-18 95.1 67 64.2
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 1.4e-17 94.0 70 60.0
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 7.2e-17 91.7 143 39.9
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 4.2e-09 65.9 50 58.0
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 5.5e-09 65.5 74 48.6
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 1.4e-07 60.8 52 51.9
PRCOL_00004690 Prasinoderma coloniale HOM05D006827 ORTHO05D008725 7.4e-06 55.1 102 32.4


User provided reference genes

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