Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 5.6e-275 950.3 466 100.0
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 1.6e-128 463.8 408 54.4
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 3.9e-127 459.1 411 53.0
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 4.8e-125 452.2 419 52.5
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 1.9e-121 440.3 419 50.8
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 2.7e-120 436.4 353 61.2
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 1.5e-118 430.6 419 51.3
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 1.5e-118 430.6 419 51.3
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 1.7e-117 427.2 411 50.4
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 2.2e-117 426.8 411 50.4
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 2.2e-117 426.8 401 49.9
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 8.2e-117 424.9 403 50.9
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 6.9e-116 421.8 419 49.4
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 1.5e-115 420.6 419 49.4
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 2.6e-115 419.9 419 48.9
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 1.3e-114 417.5 403 50.4
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 2.2e-114 416.8 419 48.7
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.2e-114 416.8 411 49.4
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 2.9e-114 416.4 410 49.3
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 6.5e-114 415.2 419 48.9
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 8.5e-114 414.8 411 49.1
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 1.1e-113 414.5 411 49.1
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 1.4e-113 414.1 411 48.9
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.4e-113 414.1 411 49.1
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 1.4e-113 414.1 411 49.1
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 1.9e-113 413.7 419 48.4
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 2.5e-113 413.3 410 48.8
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 3.2e-113 412.9 411 47.4
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 7.2e-113 411.8 403 48.1
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 7.2e-113 411.8 411 48.9
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 7.2e-113 411.8 417 48.7
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 9.4e-113 411.4 403 49.6
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 9.4e-113 411.4 411 47.9
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 1.6e-112 410.6 411 47.7
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 2.1e-112 410.2 403 48.6
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 2.1e-112 410.2 411 48.2
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 2.7e-112 409.8 419 48.7
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 3.6e-112 409.5 411 48.7
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 4.7e-112 409.1 411 48.4
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 7.9e-112 408.3 412 48.1
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 1.0e-111 407.9 407 47.7
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 1.8e-111 407.1 403 50.1
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 3.0e-111 406.4 403 49.1
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 6.7e-111 405.2 416 47.4
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 6.7e-111 405.2 403 48.1
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 6.7e-111 405.2 419 48.2
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 8.8e-111 404.8 416 47.4
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 1.5e-110 404.1 411 47.2
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 2.0e-110 403.7 411 47.7
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 3.3e-110 402.9 403 48.9
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 3.3e-110 402.9 411 46.7
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 4.4e-110 402.5 410 47.6
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 5.7e-110 402.1 403 47.6
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 5.7e-110 402.1 411 46.5
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 9.7e-110 401.4 420 48.1
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 9.7e-110 401.4 419 47.7
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 1.3e-109 401.0 419 47.0
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 1.3e-109 401.0 411 47.9
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 2.2e-109 400.2 411 47.4
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 2.2e-109 400.2 419 47.0
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 2.8e-109 399.8 411 46.2
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 3.7e-109 399.4 403 47.9
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 6.3e-109 398.7 402 48.3
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 6.3e-109 398.7 410 46.8
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 6.3e-109 398.7 411 48.2
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 1.1e-108 397.9 412 47.6
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 1.1e-108 397.9 414 46.4
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 1.4e-108 397.5 411 47.7
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 1.4e-108 397.5 411 46.2
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 1.4e-108 397.5 403 48.1
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 1.8e-108 397.1 416 46.9
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 3.1e-108 396.4 416 46.6
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 3.1e-108 396.4 382 48.7
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 5.3e-108 395.6 403 47.6
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 1.2e-107 394.4 416 46.2
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 2.0e-107 393.7 403 47.6
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 2.0e-107 393.7 414 46.6
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 3.5e-107 392.9 419 47.0
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 4.5e-107 392.5 411 46.7
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 5.9e-107 392.1 403 47.1
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 7.7e-107 391.7 403 47.6
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 1.3e-106 391.0 403 47.6
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 5.0e-106 389.0 403 47.4
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 5.0e-106 389.0 412 46.1
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 2.5e-105 386.7 413 44.8
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 2.5e-105 386.7 403 47.6
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 2.5e-105 386.7 411 48.4
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 3.2e-105 386.3 402 49.3
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 5.5e-105 385.6 402 46.8
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 1.6e-104 384.0 411 45.5
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 2.1e-104 383.6 412 45.9
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 2.1e-104 383.6 411 47.2
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 2.7e-104 383.3 403 46.9
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 3.6e-104 382.9 415 46.0
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 1.0e-103 381.3 410 47.6
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 1.0e-103 381.3 411 46.2
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 3.0e-103 379.8 407 45.9
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 4.0e-103 379.4 411 44.3
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 6.7e-103 378.6 402 48.8
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 4.4e-102 375.9 411 44.8
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 9.7e-102 374.8 401 44.6
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 9.7e-102 374.8 412 44.7
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 1.7e-101 374.0 410 45.6
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 6.3e-101 372.1 402 45.0
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 6.3e-101 372.1 404 45.8
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 1.4e-100 370.9 411 45.0
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 7.0e-100 368.6 402 44.5
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 1.2e-99 367.9 407 45.2
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 2.7e-99 366.7 407 44.7
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 2.7e-99 366.7 403 47.6
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 3.5e-99 366.3 407 44.7
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 3.5e-99 366.3 407 45.0
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 5.9e-99 365.5 408 47.1
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 7.7e-99 365.2 402 44.3
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 2.9e-98 363.2 422 45.0
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 4.2e-97 359.4 411 42.1
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 9.4e-97 358.2 403 44.9
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 1.4e-95 354.4 412 41.0
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 2.2e-93 347.1 408 43.1
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 2.7e-91 340.1 406 45.1
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 3.0e-87 326.6 339 49.3
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 3.2e-76 290.0 325 44.9
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 1.3e-66 258.1 241 48.5
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 6.6e-66 255.8 304 41.8
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 2.1e-64 250.8 269 43.9
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 2.9e-61 240.4 249 46.2
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 1.2e-59 235.0 303 41.6
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 7.6e-54 215.7 308 36.7
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 3.1e-39 167.2 256 37.9
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 2.3e-34 151.0 130 50.8
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 7.1e-28 129.4 131 50.4
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 3.3e-25 120.6 142 44.4
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 3.8e-21 107.1 98 51.0
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 3.5e-19 100.5 84 54.8
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 6.3e-16 89.7 79 48.1
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 8.2e-16 89.4 69 58.0
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 4.1e-15 87.0 73 54.8
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 1.5e-14 85.1 69 56.5
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.5e-14 85.1 69 56.5
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 2.6e-14 84.3 69 56.5
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 3.6e-11 73.9 98 45.9
Zm00001eb147200 Zea mays HOM05D003488 ORTHO05D004214 5.1e-10 70.1 374 23.8
AagrBONN_evm.TU.Sc2ySwM_368.174 Anthoceros agrestis HOM05D003488 ORTHO05D004214 1.9e-09 68.2 310 22.9
Lj1P237T11 Lonicera japonica HOM05D003488 ORTHO05D004214 4.3e-09 67.0 334 24.9
Medtr4g053260 Medicago truncatula HOM05D003488 ORTHO05D004214 2.2e-08 64.7 419 22.2
CANSAT54G1372 Cannabis sativa HOM05D003488 ORTHO05D004214 2.8e-08 64.3 355 23.9
VMungo1383G0237 Vigna mungo HOM05D003488 ORTHO05D004214 8.2e-08 62.8 439 22.6
MSTRG.5840 Avicennia marina HOM05D003488 ORTHO05D004214 1.4e-07 62.0 417 23.5
Glyma.19G194600 Glycine max HOM05D003488 ORTHO05D004214 1.8e-07 61.6 448 23.2
CBR_g46671 Chara braunii HOM05D014545 ORTHO05D020397 2.4e-07 61.2 360 25.0
ATR0776G025 Amborella trichopoda HOM05D003488 ORTHO05D004214 3.1e-07 60.8 320 25.6
Phvul.001G189500 Phaseolus vulgaris HOM05D003488 ORTHO05D004214 4.1e-07 60.5 310 25.5
Os01g0859600 Oryza sativa ssp. japonica HOM05D003488 ORTHO05D004214 5.3e-07 60.1 416 24.0
Lalb_Chr02g0154961 Lupinus albus HOM05D003488 ORTHO05D004214 1.2e-06 58.9 404 24.0
Ca_08884_v3 Cicer arietinum L. HOM05D003488 ORTHO05D004214 1.5e-06 58.5 405 23.7
Psat6g013800 Pisum sativum HOM05D003488 ORTHO05D004214 2.0e-06 58.2 315 24.4


User provided reference genes

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