Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0112s0045 Marchantia polymorpha HOM05D006342 ORTHO05D008155 1.0e-238 829.7 423 100.0
Pp3c15_22700 Physcomitrium patens HOM05D006342 ORTHO05D008155 8.5e-113 411.4 340 64.1
VMungo0251G1514 Vigna mungo HOM05D006342 ORTHO05D008155 2.6e-101 373.2 323 59.4
Medtr4g094100 Medicago truncatula HOM05D006342 ORTHO05D008155 5.7e-101 372.1 324 59.6
Psat7g100320 Pisum sativum HOM05D006342 ORTHO05D008155 1.1e-99 367.9 307 61.2
Lj4g0023834 Lotus japonicus HOM05D006342 ORTHO05D008155 1.4e-99 367.5 307 61.2
Ca_18366_v3 Cicer arietinum L. HOM05D003001 ORTHO05D003494 3.1e-99 366.3 308 61.0
Glyma.08G070600 Glycine max HOM05D006342 ORTHO05D008155 3.1e-99 366.3 321 58.9
Glyma.13G042800 Glycine max HOM05D006342 ORTHO05D008155 3.1e-99 366.3 321 59.2
TPR.G35344 Trifolium pratense HOM05D006342 ORTHO05D008155 5.4e-99 365.5 312 60.6
MELO3C018621.2 Cucumis melo HOM05D006342 ORTHO05D008155 1.2e-98 364.4 338 57.1
Gorai.005G222500 Gossypium raimondii HOM05D006342 ORTHO05D008155 2.7e-98 363.2 314 60.8
CAN.G523.45 Capsicum annuum HOM05D006342 ORTHO05D008155 7.7e-98 361.7 314 58.3
Manes.07G034700 Manihot esculenta HOM05D006342 ORTHO05D008155 7.7e-98 361.7 308 59.4
QL11p022820 Quercus lobata HOM05D006342 ORTHO05D008155 1.0e-97 361.3 308 59.7
SMO364G0259 Selaginella moellendorffii HOM05D006342 ORTHO05D008155 1.0e-97 361.3 285 66.3
Gohir.D02G198600 Gossypium hirsutum HOM05D006342 ORTHO05D008155 1.3e-97 360.9 314 60.2
FAN02G0548 Fragaria x ananassa HOM05D006342 ORTHO05D008155 1.7e-97 360.5 312 59.6
Dinv24174 Davidia involucrata HOM05D006342 ORTHO05D008155 2.9e-97 359.8 314 59.2
CSS0025541 Camellia sinensis var. sinensis HOM05D006342 ORTHO05D008155 3.8e-97 359.4 307 59.6
Lalb_Chr05g0217591 Lupinus albus HOM05D006342 ORTHO05D008155 3.8e-97 359.4 302 60.6
Peaxi162Scf01060g00128 Petunia axillaris HOM05D006342 ORTHO05D008155 3.8e-97 359.4 311 59.2
Gohir.A03G175100 Gossypium hirsutum HOM05D006342 ORTHO05D008155 5.0e-97 359.0 314 59.9
Nn5g30026 Nelumbo nucifera HOM05D006342 ORTHO05D008155 5.0e-97 359.0 300 60.0
Prupe.8G064500 Prunus persica HOM05D006342 ORTHO05D008155 5.0e-97 359.0 311 58.8
PGR042G1699 Punica granatum HOM05D006342 ORTHO05D008155 5.0e-97 359.0 368 53.0
Nitab4.5_0000863g0140 Nicotiana tabacum HOM05D006342 ORTHO05D008155 6.6e-97 358.6 305 60.0
FvH4_6g33511 Fragaria vesca HOM05D006342 ORTHO05D008155 8.6e-97 358.2 355 54.9
Thecc.02G134500 Theobroma cacao HOM05D006342 ORTHO05D008155 1.1e-96 357.8 337 56.1
TAR628G1271 Trochodendron aralioides HOM05D006342 ORTHO05D008155 1.5e-96 357.5 301 58.8
Sopen01g047960 Solanum pennellii HOM05D006342 ORTHO05D008155 1.9e-96 357.1 314 59.2
CsaV3_7G006740 Cucumis sativus L. HOM05D006342 ORTHO05D008155 2.5e-96 356.7 312 58.3
RcHm_v2.0_Chr2g0143381 Rosa chinensis HOM05D006342 ORTHO05D008155 2.5e-96 356.7 309 59.2
Hma1.2p1_0522F.1_g171800 Hydrangea macrophylla HOM05D006342 ORTHO05D008155 4.2e-96 355.9 332 56.3
arahy.Tifrunner.gnm1.ann1.U7PRNJ Arachis hypogaea HOM05D006342 ORTHO05D008155 5.5e-96 355.5 313 60.1
Rhsim11G0137800 Rhododendron simsii HOM05D006342 ORTHO05D008155 7.2e-96 355.1 311 59.2
TWI23G0792 Tripterygium wilfordii HOM05D006342 ORTHO05D008155 7.2e-96 355.1 310 60.0
Atru.chr6.1184 Acer truncatum HOM05D006342 ORTHO05D008155 9.5e-96 354.8 339 55.8
RhsimUnG0187900 Rhododendron simsii HOM05D006342 ORTHO05D008155 9.5e-96 354.8 311 59.2
Ciclev10028615m.g Citrus clementina HOM05D006342 ORTHO05D008155 1.2e-95 354.4 303 59.1
HanXRQChr10g0303621 Helianthus annuus HOM05D006342 ORTHO05D008155 2.8e-95 353.2 299 60.5
Sabra17G0037300 Salix brachista HOM05D006342 ORTHO05D008155 2.8e-95 353.2 307 59.3
Nitab4.5_0003959g0010 Nicotiana tabacum HOM05D006342 ORTHO05D008155 3.6e-95 352.8 308 58.8
PGSC0003DMG400012575 Solanum tuberosum HOM05D006342 ORTHO05D008155 4.7e-95 352.4 319 56.7
Actinidia24004 Actinidia chinensis HOM05D006342 ORTHO05D008155 6.1e-95 352.1 335 55.8
ECA234G3624 Erigeron canadensis HOM05D006342 ORTHO05D008155 8.0e-95 351.7 317 58.7
Lsat_1_v5_gn_5_108680 Lactuca sativa HOM05D006342 ORTHO05D008155 8.0e-95 351.7 308 59.1
Os03g0190100 Oryza sativa ssp. japonica HOM05D006342 ORTHO05D008155 3.0e-94 349.7 304 59.2
PSO447G0017 Papaver somniferum HOM05D006342 ORTHO05D008155 4.0e-94 349.4 310 56.5
Aa31LG2G9860 Aethionema arabicum HOM05D006342 ORTHO05D008155 5.2e-94 349.0 310 59.0
Duzib052G0010 Durio zibethinus HOM05D006342 ORTHO05D008155 5.2e-94 349.0 336 56.0
Lj9A350G66 Lonicera japonica HOM05D006342 ORTHO05D008155 8.9e-94 348.2 314 58.9
Eucgr.G00932 Eucalyptus grandis HOM05D006342 ORTHO05D008155 1.2e-93 347.8 308 57.1
CANSAT21G1086 Cannabis sativa HOM05D006342 ORTHO05D008155 2.6e-93 346.7 311 57.9
Carub.0002s0473 Capsella rubella HOM05D006342 ORTHO05D008155 2.6e-93 346.7 304 57.9
Thhalv10023528m.g Eutrema salsugineum HOM05D006342 ORTHO05D008155 2.6e-93 346.7 304 58.2
Potri.017G050900 Populus trichocarpa HOM05D006342 ORTHO05D008155 5.7e-93 345.5 307 58.6
GSVIVG01015772001 Vitis vinifera HOM05D006342 ORTHO05D008155 1.7e-92 344.0 305 57.0
AL2G16000 Arabidopsis lyrata HOM05D006342 ORTHO05D008155 3.7e-92 342.8 304 57.9
MSTRG.16600 Avicennia marina HOM05D006342 ORTHO05D008155 8.3e-92 341.7 307 58.0
Oeu042410.2 Olea europaea HOM05D006342 ORTHO05D008155 8.3e-92 341.7 308 58.8
DCAR_003711 Daucus carota HOM05D006342 ORTHO05D008155 5.4e-91 339.0 314 55.7
AT1G60600 Arabidopsis thaliana HOM05D006342 ORTHO05D008155 7.0e-91 338.6 304 57.2
BcaB04g20275 Brassica carinata HOM05D006342 ORTHO05D008155 1.2e-90 337.8 304 57.6
Cc02_g21250 Coffea canephora HOM05D006342 ORTHO05D008155 1.6e-90 337.4 305 57.7
SGA_v2.0_scaffold83G26327 Striga asiatica HOM05D006342 ORTHO05D008155 2.7e-90 336.7 303 59.4
EL10Ac9g21517 Beta vulgaris HOM05D006342 ORTHO05D008155 4.5e-90 335.9 313 55.6
AUR62013159 Chenopodium quinoa HOM05D006342 ORTHO05D008155 1.0e-89 334.7 312 55.8
AUR62010160 Chenopodium quinoa HOM05D006342 ORTHO05D008155 2.3e-89 333.6 312 55.8
BolC1t03681H Brassica oleracea HOM05D006342 ORTHO05D008155 5.0e-89 332.4 305 57.0
A01p29370 Brassica napus HOM05D006342 ORTHO05D008155 1.5e-88 330.9 305 56.7
MD10G1052500 Malus domestica HOM05D006342 ORTHO05D008155 1.5e-88 330.9 318 55.7
COL.COLO4_32304 Corchorus olitorius HOM05D006342 ORTHO05D008155 2.5e-88 330.1 284 60.9
Sc15g0003050 Simmondsia chinensis HOM05D006342 ORTHO05D008155 2.5e-88 330.1 309 56.6
Solyc01g105460.4 Solanum lycopersicum HOM05D006342 ORTHO05D008155 2.5e-88 330.1 283 60.1
BraA01t03071Z Brassica rapa HOM05D006342 ORTHO05D008155 3.3e-88 329.7 305 57.0
C01p37160 Brassica napus HOM05D006342 ORTHO05D008155 5.6e-88 328.9 313 56.2
BcaC09g49390 Brassica carinata HOM05D006342 ORTHO05D008155 7.3e-88 328.6 305 56.7
Migut.B01155 Erythranthe guttata HOM05D006342 ORTHO05D008155 7.3e-88 328.6 315 54.6
MSTRG.20291 Avicennia marina HOM05D006342 ORTHO05D008155 1.2e-87 327.8 321 54.5
Migut.B00584 Erythranthe guttata HOM05D006342 ORTHO05D008155 2.1e-87 327.0 318 56.0
THA.LOC104799883 Tarenaya hassleriana HOM05D006342 ORTHO05D008155 6.8e-86 322.0 279 60.2
arahy.Tifrunner.gnm1.ann1.XZGJ82 Arachis hypogaea HOM05D006342 ORTHO05D008155 2.0e-85 320.5 307 56.4
ClCG09G015650 Citrullus lanatus HOM05D006342 ORTHO05D008155 3.4e-85 319.7 303 55.4
CiPaw.05G033400 Carya illinoinensis HOM05D006342 ORTHO05D008155 9.8e-85 318.2 308 54.2
Sabra17G0042600 Salix brachista HOM05D006342 ORTHO05D008155 1.7e-84 317.4 307 55.4
MBI05_g05612_MAGBIO Magnolia biondii HOM05D006342 ORTHO05D008155 2.9e-84 316.6 295 56.9
SalBow5G5605 Salvia bowleyana HOM05D006342 ORTHO05D008155 2.9e-84 316.6 335 53.1
Zm00001eb006830 Zea mays HOM05D006342 ORTHO05D008155 8.3e-84 315.1 358 50.6
Sabra17G0037900 Salix brachista HOM05D006342 ORTHO05D008155 1.4e-83 314.3 307 55.0
HPP92_019303 Vanilla planifolia HOM05D006342 ORTHO05D008155 2.4e-83 313.5 333 52.9
unitig_0.g609 Utricularia gibba HOM05D006342 ORTHO05D008190 5.4e-83 312.4 295 56.9
AagrBONN_evm.TU.Sc2ySwM_228.424 Anthoceros agrestis HOM05D006342 ORTHO05D008155 2.7e-82 310.1 337 51.6
Cpa.g.sc42.26 Carica papaya HOM05D006342 ORTHO05D008155 8.6e-81 305.1 281 56.6
FAN09G1871 Fragaria x ananassa HOM05D006342 ORTHO05D003187 1.9e-80 303.9 358 49.4
Migut.B01157 Erythranthe guttata HOM05D006342 ORTHO05D008155 2.1e-79 300.4 282 55.3
Hund06370 Selenicereus undatus HOM05D006342 ORTHO05D008155 4.0e-78 296.2 278 55.8
AagrBONN_evm.TU.Sc2ySwM_117.3744 Anthoceros agrestis HOM05D006342 ORTHO05D008155 2.9e-76 290.0 309 52.1
PSO210G1371 Papaver somniferum HOM05D006342 ORTHO05D008155 4.1e-75 286.2 246 58.9
vmacro01839 Vaccinium macrocarpon HOM05D006342 ORTHO05D008155 9.5e-72 275.0 358 44.4
Oeu000253.3 Olea europaea HOM05D006342 ORTHO05D008155 1.2e-71 274.6 308 51.0
Phvul.002G210750 Phaseolus vulgaris HOM05D006342 ORTHO05D008155 3.1e-70 270.0 232 59.9
Sed0004067 Sechium edule HOM05D006342 ORTHO05D008155 4.9e-68 262.7 227 58.6
PRCOL_00002739 Prasinoderma coloniale HOM05D006342 ORTHO05D008155 2.4e-67 260.4 299 49.5
CBR_g45392 Chara braunii HOM05D006342 ORTHO05D008155 1.6e-63 247.7 332 46.4
SpUN0430_0010 Schrenkiella parvula HOM05D006342 ORTHO05D008155 1.7e-60 237.7 227 55.1
QL11p022738 Quercus lobata HOM05D006342 ORTHO05D008155 1.4e-59 234.6 228 56.6
FAN14G1047 Fragaria x ananassa HOM05D000343 ORTHO05D003187 1.2e-58 231.5 355 41.4
Hma1.2p1_0522F.1_g171810 Hydrangea macrophylla HOM05D006342 ORTHO05D008155 7.8e-58 228.8 193 58.5
Ah.01g010100 Amaranthus hybridus HOM05D006342 ORTHO05D008155 1.0e-57 228.4 212 58.0
Cre04.g219787 Chlamydomonas reinhardtii HOM05D006342 ORTHO05D008155 2.2e-52 210.7 383 39.7
Haze_10585 Corylus avellana HOM05D006342 ORTHO05D008155 5.4e-51 206.1 273 44.7
SEGI_15165 Sequoiadendron giganteum HOM05D006342 ORTHO05D008155 2.7e-50 203.8 177 56.5
ATR0918G004 Amborella trichopoda HOM05D006342 ORTHO05D008155 9.6e-40 168.7 290 38.3
Aqoxy5G01924 Aquilegia oxysepala HOM05D006342 ORTHO05D008155 1.9e-32 144.4 124 57.3
SEGI_15059 Sequoiadendron giganteum HOM05D006342 ORTHO05D008155 9.3e-27 125.6 107 60.7
Glyma.10G123801 Glycine max HOM05D006342 ORTHO05D008155 3.0e-25 120.6 99 58.6
Glyma.16G064700 Glycine max HOM05D006342 ORTHO05D008155 3.0e-25 120.6 99 58.6
ATR0782G112 Amborella trichopoda HOM05D006342 ORTHO05D008155 1.7e-20 104.8 96 52.1
arahy.Tifrunner.gnm1.ann1.6J847D Arachis hypogaea HOM05D006342 ORTHO05D008155 1.4e-14 85.1 95 50.5
arahy.Tifrunner.gnm1.ann1.RT43SE Arachis hypogaea HOM05D006342 ORTHO05D008155 1.4e-14 85.1 95 50.5
arahy.Tifrunner.gnm1.ann1.2FS2S8 Arachis hypogaea HOM05D006342 ORTHO05D008155 1.8e-14 84.7 91 51.6
CARHR052370 Cardamine hirsuta HOM05D006342 ORTHO05D008155 1.2e-13 82.0 89 46.1
TAR376G0398 Trochodendron aralioides HOM05D000064 ORTHO05D001307 2.7e-10 70.9 51 60.8
CSS0034348 Camellia sinensis var. sinensis HOM05D006342 ORTHO05D008155 1.4e-09 68.6 93 43.0
PRCOL_00007287 Prasinoderma coloniale HOM05D037008 ORTHO05D049061 3.3e-08 63.9 178 32.0
arahy.Tifrunner.gnm1.ann1.P2KY5D Arachis hypogaea HOM05D006342 ORTHO05D008155 1.3e-07 62.0 58 55.2


User provided reference genes

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