Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0110s0034 Marchantia polymorpha HOM05D006927 ORTHO05D009065 9.0e-237 823.2 405 100.0
Pp3c20_10810 Physcomitrium patens HOM05D006927 ORTHO05D009065 1.6e-108 397.1 324 60.5
AagrBONN_evm.TU.Sc2ySwM_228.4179 Anthoceros agrestis HOM05D006927 ORTHO05D009065 1.2e-103 380.9 321 59.5
Gohir.A11G224222 Gossypium hirsutum HOM05D006927 ORTHO05D009065 6.9e-96 355.1 287 59.2
Nitab4.5_0006785g0060 Nicotiana tabacum HOM05D006927 ORTHO05D009065 2.0e-95 353.6 296 57.4
CSS0031880 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 2.6e-95 353.2 292 58.2
VMungo0251G3349 Vigna mungo HOM05D006927 ORTHO05D009065 3.4e-95 352.8 290 60.0
CSS0044270 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 4.5e-95 352.4 292 58.2
Nitab4.5_0000792g0130 Nicotiana tabacum HOM05D006927 ORTHO05D009065 5.9e-95 352.1 299 56.9
DCAR_001906 Daucus carota HOM05D006927 ORTHO05D009065 1.3e-94 350.9 296 59.8
Gorai.007G250200 Gossypium raimondii HOM05D006927 ORTHO05D009065 1.3e-94 350.9 287 58.9
FAN03G0521 Fragaria x ananassa HOM05D006927 ORTHO05D009065 5.0e-94 349.0 288 58.7
Peaxi162Scf00907g00025 Petunia axillaris HOM05D006927 ORTHO05D009065 1.4e-93 347.4 307 57.0
Potri.013G070700 Populus trichocarpa HOM05D006927 ORTHO05D009065 1.4e-93 347.4 292 59.6
AT5G17670 Arabidopsis thaliana HOM05D006927 ORTHO05D009065 2.5e-93 346.7 291 59.5
Manes.09G133500 Manihot esculenta HOM05D006927 ORTHO05D009065 2.5e-93 346.7 289 60.6
Solyc01g081480.3 Solanum lycopersicum HOM05D006927 ORTHO05D009065 2.5e-93 346.7 291 57.4
Sopen01g033040 Solanum pennellii HOM05D006927 ORTHO05D009065 2.5e-93 346.7 291 57.4
Thhalv10014137m.g Eutrema salsugineum HOM05D006927 ORTHO05D009065 3.2e-93 346.3 287 59.6
PGSC0003DMG400031110 Solanum tuberosum HOM05D006927 ORTHO05D009065 3.2e-93 346.3 293 57.0
Phvul.002G317100 Phaseolus vulgaris HOM05D006927 ORTHO05D009065 5.5e-93 345.5 288 59.4
AL6G28760 Arabidopsis lyrata HOM05D006927 ORTHO05D009065 7.2e-93 345.1 295 58.6
Thecc.05G234500 Theobroma cacao HOM05D006927 ORTHO05D009065 7.2e-93 345.1 291 59.1
Carub.0006s1591 Capsella rubella HOM05D006927 ORTHO05D009065 9.4e-93 344.7 287 58.2
Zm00001eb208940 Zea mays HOM05D006927 ORTHO05D009065 9.4e-93 344.7 305 56.7
FvH4_7g08340 Fragaria vesca HOM05D006927 ORTHO05D009065 1.6e-92 344.0 288 58.0
RcHm_v2.0_Chr1g0340711 Rosa chinensis HOM05D006927 ORTHO05D009065 1.6e-92 344.0 288 58.0
Cc02_g26470 Coffea canephora HOM05D006927 ORTHO05D009065 2.1e-92 343.6 289 57.8
Ah.16g104050 Amaranthus hybridus HOM05D006927 ORTHO05D009065 2.7e-92 343.2 289 60.2
ATR0568G108 Amborella trichopoda HOM05D006927 ORTHO05D009065 2.7e-92 343.2 293 57.3
BcaC03g13532 Brassica carinata HOM05D006927 ORTHO05D009065 2.7e-92 343.2 288 59.4
Aqoxy1G00986 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 4.7e-92 342.4 304 56.9
GSVIVG01019324001 Vitis vinifera HOM05D006927 ORTHO05D009065 4.7e-92 342.4 291 58.4
Ciclev10032190m.g Citrus clementina HOM05D006927 ORTHO05D009065 6.1e-92 342.0 291 59.5
CsaV3_6G006390 Cucumis sativus L. HOM05D006927 ORTHO05D009065 6.1e-92 342.0 289 60.6
Eucgr.D01080 Eucalyptus grandis HOM05D006927 ORTHO05D009065 6.1e-92 342.0 288 59.0
Sed0018978 Sechium edule HOM05D006927 ORTHO05D009065 6.1e-92 342.0 301 57.1
Rhsim07G0047700 Rhododendron simsii HOM05D006927 ORTHO05D009065 7.9e-92 341.7 312 54.2
TWI34G1327 Tripterygium wilfordii HOM05D006927 ORTHO05D009065 7.9e-92 341.7 289 57.8
Duzib177G0162 Durio zibethinus HOM05D006927 ORTHO05D009065 1.0e-91 341.3 291 58.8
Sp6g26550 Schrenkiella parvula HOM05D006927 ORTHO05D009065 1.0e-91 341.3 287 58.2
CAN.G992.25 Capsicum annuum HOM05D006927 ORTHO05D009065 1.8e-91 340.5 308 54.9
SMO141G0137 Selaginella moellendorffii HOM05D006927 ORTHO05D009065 1.8e-91 340.5 286 59.4
Lsat_1_v5_gn_1_89341 Lactuca sativa HOM05D006927 ORTHO05D009065 2.3e-91 340.1 316 54.4
Os02g0129900 Oryza sativa ssp. japonica HOM05D006927 ORTHO05D009065 3.0e-91 339.7 313 55.3
MELO3C022480.2 Cucumis melo HOM05D006927 ORTHO05D009065 3.9e-91 339.3 291 59.5
SalBow5G1207 Salvia bowleyana HOM05D006927 ORTHO05D009065 6.7e-91 338.6 292 57.5
Prupe.2G106800 Prunus persica HOM05D006927 ORTHO05D009065 8.8e-91 338.2 291 56.7
FAN10G1940 Fragaria x ananassa HOM05D006927 ORTHO05D009065 1.1e-90 337.8 296 56.4
QL04p053394 Quercus lobata HOM05D006927 ORTHO05D009065 2.0e-90 337.0 288 58.7
Cpa.g.sc73.27 Carica papaya HOM05D006927 ORTHO05D009065 2.6e-90 336.7 304 55.3
C02p09230 Brassica napus HOM05D006927 ORTHO05D009065 4.4e-90 335.9 292 58.2
HanXRQChr01g0018481 Helianthus annuus HOM05D006927 ORTHO05D009065 7.4e-90 335.1 289 58.1
A02p04400 Brassica napus HOM05D006927 ORTHO05D009065 9.7e-90 334.7 300 57.0
Glyma.06G001500 Glycine max HOM05D006927 ORTHO05D009065 9.7e-90 334.7 300 57.7
Migut.B01420 Erythranthe guttata HOM05D006927 ORTHO05D009065 3.7e-89 332.8 292 55.1
FAN06G3009 Fragaria x ananassa HOM05D006927 ORTHO05D009065 1.1e-88 331.3 306 54.2
Dinv43961 Davidia involucrata HOM05D006927 ORTHO05D009065 1.4e-88 330.9 287 57.5
Lj1g0006598 Lotus japonicus HOM05D006927 ORTHO05D009065 1.8e-88 330.5 291 57.0
PSO675G5316 Papaver somniferum HOM05D006927 ORTHO05D009065 2.4e-88 330.1 299 54.8
THA.LOC104820815 Tarenaya hassleriana HOM05D006927 ORTHO05D009065 2.4e-88 330.1 293 56.7
arahy.Tifrunner.gnm1.ann1.A7PVHI Arachis hypogaea HOM05D006927 ORTHO05D009065 7.0e-88 328.6 295 56.3
MD07G1081500 Malus domestica HOM05D006927 ORTHO05D009065 7.0e-88 328.6 289 55.7
arahy.Tifrunner.gnm1.ann1.DTN3WJ Arachis hypogaea HOM05D006927 ORTHO05D009065 2.0e-87 327.0 295 56.3
Sc11g0005590 Simmondsia chinensis HOM05D006927 ORTHO05D009065 4.5e-87 325.9 307 53.4
Medtr3g118320 Medicago truncatula HOM05D006927 ORTHO05D009065 5.9e-87 325.5 318 52.2
CANSAT25G2771 Cannabis sativa HOM05D006927 ORTHO05D009065 1.7e-86 323.9 298 53.4
ECA248G1152 Erigeron canadensis HOM05D006927 ORTHO05D009065 2.2e-86 323.6 281 56.6
MBI04_g06278_MAGBIO Magnolia biondii HOM05D006927 ORTHO05D009065 2.9e-86 323.2 281 57.7
PGR083G0610 Punica granatum HOM05D006927 ORTHO05D009065 2.9e-86 323.2 295 55.3
ClCG06G000620 Citrullus lanatus HOM05D006927 ORTHO05D009065 8.5e-86 321.6 343 51.0
Atru.chr2.1634 Acer truncatum HOM05D006927 ORTHO05D009065 1.9e-85 320.5 321 52.0
Aa31LG11G11960 Aethionema arabicum HOM05D006927 ORTHO05D009065 1.9e-85 320.5 321 53.0
Lj9A617T58 Lonicera japonica HOM05D006927 ORTHO05D009065 9.4e-85 318.2 280 55.7
TPR.G38566 Trifolium pratense HOM05D006927 ORTHO05D009065 2.1e-84 317.0 292 56.5
TAR629G3441 Trochodendron aralioides HOM05D006927 ORTHO05D009065 6.7e-83 312.0 284 54.2
Lalb_Chr08g0246751 Lupinus albus HOM05D006927 ORTHO05D009065 8.8e-83 311.6 291 54.6
Haze_15787 Corylus avellana HOM05D006927 ORTHO05D009065 3.7e-81 306.2 296 53.7
COL.COLO4_21417 Corchorus olitorius HOM05D006927 ORTHO05D009065 1.4e-80 304.3 280 56.1
Ca_15418_v3 Cicer arietinum L. HOM05D006927 ORTHO05D009065 3.1e-80 303.1 271 56.5
SGA_v2.0_scaffold98G29375 Striga asiatica HOM05D006927 ORTHO05D009065 4.5e-79 299.3 293 53.2
vmacro13598 Vaccinium macrocarpon HOM05D006927 ORTHO05D009065 2.2e-78 297.0 423 41.8
FAN01G0804 Fragaria x ananassa HOM05D006927 ORTHO05D009065 5.7e-74 282.3 282 52.8
CDE02G0279 Ceratophyllum demersum HOM05D006927 ORTHO05D009065 1.3e-73 281.2 289 50.2
MD02G1231900 Malus domestica HOM05D006927 ORTHO05D009065 5.9e-71 272.3 254 53.9
MCO09G674 Micromonas commoda HOM05D006927 ORTHO05D009065 1.3e-65 254.6 280 46.4
Cre07.g313550 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D009065 2.8e-65 253.4 292 43.8
PRCOL_00002784 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 1.2e-63 248.1 314 43.6
Sabra13G0061600 Salix brachista HOM05D006927 ORTHO05D009065 8.6e-62 241.9 328 43.6
Nn1g09344 Nelumbo nucifera HOM05D006927 ORTHO05D009065 6.1e-60 235.7 181 61.9
Psat5g000960 Pisum sativum HOM05D006927 ORTHO05D009065 1.0e-59 235.0 227 52.4
Dinv43521 Davidia involucrata HOM05D006927 ORTHO05D009065 2.3e-59 233.8 193 61.1
Oeu034881.1 Olea europaea HOM05D006927 ORTHO05D009065 1.7e-57 227.6 173 61.3
BolC2t06832H Brassica oleracea HOM05D006927 ORTHO05D009065 2.0e-55 220.7 163 63.8
BraA02t05404Z Brassica rapa HOM05D006927 ORTHO05D009065 2.7e-55 220.3 163 63.8
HPP92_025548 Vanilla planifolia HOM05D006927 ORTHO05D009065 1.9e-53 214.2 183 56.8
CiPaw.02G047300 Carya illinoinensis HOM05D006927 ORTHO05D009065 9.5e-53 211.8 163 64.4
Actinidia31733 Actinidia chinensis HOM05D006927 ORTHO05D009065 8.0e-52 208.8 185 53.0
CARHR195510 Cardamine hirsuta HOM05D006927 ORTHO05D009065 6.0e-47 192.6 164 54.9
Aqoxy116s007 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 3.3e-45 186.8 261 43.3
unitig_26.g8847 Utricularia gibba HOM05D006927 ORTHO05D009065 1.7e-38 164.5 133 58.6
Gohir.D11G237100 Gossypium hirsutum HOM05D006927 ORTHO05D009065 1.1e-35 155.2 118 64.4
MCO02G275 Micromonas commoda HOM05D006927 ORTHO05D044296 1.1e-35 155.2 328 33.2
PRCOL_00000683 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 2.2e-33 147.5 289 37.4
Cre01.g025150 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D044296 6.6e-30 136.0 354 30.8
unitig_26.g8846 Utricularia gibba HOM05D006927 ORTHO05D009065 1.7e-25 121.3 87 63.2
SEGI_38351 Sequoiadendron giganteum HOM05D006927 ORTHO05D009065 3.3e-21 107.1 109 54.1
Thecc.05G234900 Theobroma cacao HOM05D006927 ORTHO05D009065 6.9e-19 99.4 60 70.0
BcaB08g36753 Brassica carinata HOM05D006927 ORTHO05D009065 4.2e-16 90.1 111 45.9
Actinidia34774 Actinidia chinensis HOM05D006927 ORTHO05D009065 1.6e-15 88.2 75 53.3
AagrBONN_evm.TU.Sc2ySwM_368.1936 Anthoceros agrestis HOM05D006927 ORTHO05D071668 1.1e-13 82.0 244 27.0
HPP92_025520 Vanilla planifolia HOM05D006927 ORTHO05D009065 9.6e-13 79.0 160 35.0
PRCOL_00002844 Prasinoderma coloniale HOM05D006927 ORTHO05D049054 2.0e-10 71.2 131 35.9
MCO12G090 Micromonas commoda HOM05D006927 ORTHO05D049054 7.6e-10 69.3 342 24.6
CBR_g4745 Chara braunii HOM05D000019 ORTHO05D000002 1.9e-08 64.7 67 40.3


User provided reference genes

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