Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0109s0061 Marchantia polymorpha HOM05D006455 ORTHO05D008098 0.0e+00 1129.4 592 100.0
Pp3c10_13370 Physcomitrium patens HOM05D006455 ORTHO05D008098 7.5e-99 365.5 528 41.7
SMO200G0077 Selaginella moellendorffii HOM05D006455 ORTHO05D008098 1.5e-86 324.7 528 38.1
SEGI_16096 Sequoiadendron giganteum HOM05D006455 ORTHO05D008098 1.5e-86 324.7 532 38.7
AagrBONN_evm.TU.Sc2ySwM_228.5553 Anthoceros agrestis HOM05D006455 ORTHO05D008098 1.3e-79 301.6 549 36.6
ATR0743G062 Amborella trichopoda HOM05D006455 ORTHO05D008098 2.1e-77 294.3 515 35.5
Manes.12G057502 Manihot esculenta HOM05D006455 ORTHO05D008098 5.1e-71 273.1 497 35.2
Manes.12G057904 Manihot esculenta HOM05D006455 ORTHO05D008098 1.5e-70 271.6 497 35.0
Os01g0897100 Oryza sativa ssp. japonica HOM05D006455 ORTHO05D008098 9.6e-70 268.9 518 35.5
Haze_08072 Corylus avellana HOM05D006455 ORTHO05D008098 8.1e-69 265.8 540 32.0
PSO210G0904 Papaver somniferum HOM05D006455 ORTHO05D008098 1.1e-68 265.4 515 37.9
Migut.D00764 Erythranthe guttata HOM05D006455 ORTHO05D008098 1.4e-68 265.0 568 34.3
Aqoxy2G04132 Aquilegia oxysepala HOM05D006455 ORTHO05D008098 1.8e-68 264.6 530 34.0
BcaC06g30808 Brassica carinata HOM05D006455 ORTHO05D008098 1.8e-68 264.6 556 37.2
PSO210G7796 Papaver somniferum HOM05D006455 ORTHO05D008098 1.8e-68 264.6 533 37.3
TAR362G0985 Trochodendron aralioides HOM05D006455 ORTHO05D008098 1.8e-68 264.6 535 31.2
Cfa012584 Carpinus fangiana HOM05D006455 ORTHO05D008098 3.1e-68 263.8 539 31.5
Manes.12G057700 Manihot esculenta HOM05D006455 ORTHO05D008098 3.1e-68 263.8 514 34.0
Manes.12G057901 Manihot esculenta HOM05D006455 ORTHO05D008098 3.1e-68 263.8 514 34.0
Carub.0008s0792 Capsella rubella HOM05D006455 ORTHO05D008098 6.8e-68 262.7 547 35.8
Aa31LG5G9090 Aethionema arabicum HOM05D006455 ORTHO05D008098 8.9e-68 262.3 535 35.7
C07p39110 Brassica napus HOM05D006455 ORTHO05D008098 8.9e-68 262.3 531 36.9
CiPaw.12G071600 Carya illinoinensis HOM05D006455 ORTHO05D008098 2.6e-67 260.8 548 31.8
A06p39230 Brassica napus HOM05D006455 ORTHO05D008098 3.4e-67 260.4 538 36.8
HanXRQChr01g0014041 Helianthus annuus HOM05D006455 ORTHO05D008098 4.4e-67 260.0 522 33.5
GSVIVG01001915001 Vitis vinifera HOM05D006455 ORTHO05D008098 4.4e-67 260.0 522 31.6
BraA06t26837Z Brassica rapa HOM05D006455 ORTHO05D008098 5.8e-67 259.6 518 37.1
HanXRQChr01g0013871 Helianthus annuus HOM05D006455 ORTHO05D008098 2.9e-66 257.3 522 33.3
Lsat_1_v5_gn_5_176300 Lactuca sativa HOM05D006455 ORTHO05D008098 2.9e-66 257.3 537 33.3
PGR044G2428 Punica granatum HOM05D006455 ORTHO05D008098 2.9e-66 257.3 505 32.1
BolC7t44431H Brassica oleracea HOM05D006455 ORTHO05D008098 3.8e-66 256.9 525 36.0
CSS0002127 Camellia sinensis var. sinensis HOM05D006455 ORTHO05D008098 4.9e-66 256.5 425 34.1
Sp2g18700 Schrenkiella parvula HOM05D006455 ORTHO05D008098 8.4e-66 255.8 522 31.4
Thecc.01G205700 Theobroma cacao HOM05D006455 ORTHO05D008098 8.4e-66 255.8 545 32.3
Sopen09g013040 Solanum pennellii HOM05D006455 ORTHO05D008098 1.9e-65 254.6 532 32.1
Cc04_g10320 Coffea canephora HOM05D006455 ORTHO05D008098 3.2e-65 253.8 532 31.2
Gohir.A11G144500 Gossypium hirsutum HOM05D006455 ORTHO05D008098 3.2e-65 253.8 532 33.3
CsaV3_3G001300 Cucumis sativus L. HOM05D006455 ORTHO05D008098 4.2e-65 253.4 539 30.2
Eucgr.K02350 Eucalyptus grandis HOM05D006455 ORTHO05D008098 4.2e-65 253.4 531 33.1
ECA248G0009 Erigeron canadensis HOM05D006455 ORTHO05D008098 5.4e-65 253.1 533 33.2
Gorai.007G161800 Gossypium raimondii HOM05D006455 ORTHO05D008098 5.4e-65 253.1 536 32.1
CANSAT21G2240 Cannabis sativa HOM05D006455 ORTHO05D008098 3.5e-64 250.4 522 30.8
Nitab4.5_0006514g0010 Nicotiana tabacum HOM05D006455 ORTHO05D008098 4.6e-64 250.0 544 31.4
AL8G21110 Arabidopsis lyrata HOM05D006455 ORTHO05D008098 6.0e-64 249.6 509 35.2
BcaC06g30805 Brassica carinata HOM05D006455 ORTHO05D008098 7.8e-64 249.2 514 35.6
CARHR183890 Cardamine hirsuta HOM05D006455 ORTHO05D008098 7.8e-64 249.2 530 35.3
SGA_v2.0_scaffold158G37512 Striga asiatica HOM05D006455 ORTHO05D008098 1.3e-63 248.4 553 30.7
Cpa.g.sc8.27 Carica papaya HOM05D006455 ORTHO05D008098 1.7e-63 248.1 506 34.8
TWI75G0274 Tripterygium wilfordii HOM05D006455 ORTHO05D008098 1.7e-63 248.1 528 33.3
Zm00001eb144730 Zea mays HOM05D006455 ORTHO05D008098 2.3e-63 247.7 508 32.7
QL12p000818 Quercus lobata HOM05D006455 ORTHO05D008098 3.0e-63 247.3 434 33.6
AT5G48340 Arabidopsis thaliana HOM05D006455 ORTHO05D008098 6.6e-63 246.1 509 33.8
Rhsim13G0055500 Rhododendron simsii HOM05D006455 ORTHO05D008098 1.1e-62 245.4 510 32.4
Potri.014G174300 Populus trichocarpa HOM05D006455 ORTHO05D008098 1.9e-62 244.6 534 33.5
Solyc09g020150.4 Solanum lycopersicum HOM05D006455 ORTHO05D008098 3.3e-62 243.8 545 33.0
Hund02815 Selenicereus undatus HOM05D006455 ORTHO05D008098 9.6e-62 242.3 533 30.8
Atru.chr6.3495 Acer truncatum HOM05D006455 ORTHO05D008098 1.3e-61 241.9 519 33.9
Nitab4.5_0000077g0170 Nicotiana tabacum HOM05D006455 ORTHO05D008098 1.6e-61 241.5 532 32.1
AUR62028628 Chenopodium quinoa HOM05D006455 ORTHO05D008098 3.6e-61 240.4 507 31.6
AUR62008053 Chenopodium quinoa HOM05D006455 ORTHO05D008098 6.2e-61 239.6 526 29.7
Ciclev10014895m.g Citrus clementina HOM05D006455 ORTHO05D008098 6.2e-61 239.6 546 31.9
Nn1g09557 Nelumbo nucifera HOM05D006455 ORTHO05D008098 4.0e-60 236.9 533 31.9
ClCG10G001240 Citrullus lanatus HOM05D006455 ORTHO05D008098 5.3e-60 236.5 515 33.0
Thhalv10003907m.g Eutrema salsugineum HOM05D006455 ORTHO05D008098 2.6e-59 234.2 489 35.6
Sed0000077 Sechium edule HOM05D006455 ORTHO05D008098 2.6e-59 234.2 523 31.5
MBI07_g34151_MAGBIO Magnolia biondii HOM05D006455 ORTHO05D008098 3.4e-59 233.8 495 34.3
Lj1A106T21 Lonicera japonica HOM05D006455 ORTHO05D008098 5.8e-59 233.0 420 32.6
HPP92_001271 Vanilla planifolia HOM05D006455 ORTHO05D008098 5.8e-59 233.0 361 34.9
FAN13G0315 Fragaria x ananassa HOM05D006455 ORTHO05D008098 7.6e-59 232.6 540 29.6
Sc05g0001610 Simmondsia chinensis HOM05D006455 ORTHO05D008098 7.6e-59 232.6 500 30.8
RcHm_v2.0_Chr7g0228451 Rosa chinensis HOM05D006455 ORTHO05D008098 2.2e-58 231.1 534 30.7
Peaxi162Scf00315g00814 Petunia axillaris HOM05D006455 ORTHO05D008098 2.9e-58 230.7 495 32.7
MELO3C013818.2 Cucumis melo HOM05D006455 ORTHO05D008098 4.9e-58 229.9 428 32.2
Prupe.2G049600 Prunus persica HOM05D006455 ORTHO05D008098 4.9e-58 229.9 550 27.6
MD02G1270700 Malus domestica HOM05D006455 ORTHO05D008098 6.4e-58 229.6 499 28.5
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 8.4e-58 229.2 519 28.3
FvH4_5g32260 Fragaria vesca HOM05D006455 ORTHO05D008098 5.4e-57 226.5 540 29.1
COL.COLO4_29922 Corchorus olitorius HOM05D006455 ORTHO05D008098 9.3e-57 225.7 392 33.7
SHI10210 Sapria himalayana HOM05D006455 ORTHO05D008098 9.3e-57 225.7 546 32.8
MSTRG.18514 Avicennia marina HOM05D006455 ORTHO05D008098 1.6e-56 224.9 524 29.6
DCAR_000439 Daucus carota HOM05D006455 ORTHO05D008098 1.6e-56 224.9 358 34.4
FAN18G4165 Fragaria x ananassa HOM05D006455 ORTHO05D008098 1.6e-56 224.9 537 29.4
TPR.G31161 Trifolium pratense HOM05D006455 ORTHO05D008098 1.6e-56 224.9 539 32.3
Sabra14G0133600 Salix brachista HOM05D006455 ORTHO05D008098 6.0e-56 223.0 518 33.6
Ca_30349_v3 Cicer arietinum L. HOM05D006455 ORTHO05D008098 8.7e-55 219.2 541 30.7
Lj4g0021895 Lotus japonicus HOM05D006455 ORTHO05D008098 8.7e-55 219.2 521 32.2
CBR_g48756 Chara braunii HOM05D006455 ORTHO05D000497 1.5e-54 218.4 508 29.7
Glyma.16G105200 Glycine max HOM05D006455 ORTHO05D008098 2.5e-54 217.6 405 33.1
VMungo0251G3325 Vigna mungo HOM05D006455 ORTHO05D008098 4.3e-54 216.9 513 32.4
FAN08G0013 Fragaria x ananassa HOM05D006455 ORTHO05D004776 6.2e-53 213.0 523 30.2
Lalb_Chr16g0391751 Lupinus albus HOM05D006455 ORTHO05D008098 6.2e-53 213.0 495 31.7
Manes.12G057900 Manihot esculenta HOM05D006455 ORTHO05D008098 1.4e-52 211.8 440 30.0
EL10Ac5g10573 Beta vulgaris HOM05D006455 ORTHO05D008098 9.0e-52 209.1 412 35.0
Gohir.D11G150900 Gossypium hirsutum HOM05D006455 ORTHO05D008098 5.8e-51 206.5 403 34.5
Ca_22482_v3 Cicer arietinum L. HOM05D006455 ORTHO05D008098 9.9e-51 205.7 430 30.7
Manes.12G058105 Manihot esculenta HOM05D006455 ORTHO05D008098 2.9e-50 204.1 434 29.7
Medtr8g071270 Medicago truncatula HOM05D006455 ORTHO05D008098 3.8e-50 203.8 435 31.7
Psat4g108080 Pisum sativum HOM05D006455 ORTHO05D008098 3.8e-50 203.8 527 27.9
arahy.Tifrunner.gnm1.ann1.E0JCGG Arachis hypogaea HOM05D006455 ORTHO05D008098 7.1e-49 199.5 445 29.0
Phvul.003G279900 Phaseolus vulgaris HOM05D006455 ORTHO05D008098 2.1e-48 198.0 405 30.9
arahy.Tifrunner.gnm1.ann1.U8H9H1 Arachis hypogaea HOM05D006455 ORTHO05D008098 2.7e-48 197.6 430 29.1
Actinidia23129 Actinidia chinensis HOM05D006455 ORTHO05D008098 2.5e-46 191.0 523 31.2
vmacro02844 Vaccinium macrocarpon HOM05D006455 ORTHO05D008098 1.1e-44 185.7 358 30.4
Manes.12G058904 Manihot esculenta HOM05D006455 ORTHO05D008098 1.0e-42 179.1 280 35.4
HPP92_001254 Vanilla planifolia HOM05D006455 ORTHO05D008098 5.5e-41 173.3 236 38.1
CDE05G1197 Ceratophyllum demersum HOM05D006455 ORTHO05D008098 1.2e-40 172.2 209 39.7
Manes.12G057503 Manihot esculenta HOM05D006455 ORTHO05D008098 6.0e-40 169.9 157 49.0
Manes.12G057505 Manihot esculenta HOM05D006455 ORTHO05D008098 6.0e-40 169.9 157 49.0
Dinv07639 Davidia involucrata HOM05D006455 ORTHO05D008098 5.1e-39 166.8 184 44.6
Ah.11g050710 Amaranthus hybridus HOM05D006455 ORTHO05D008098 3.3e-38 164.1 215 39.5
PGSC0003DMG402020303 Solanum tuberosum HOM05D006455 ORTHO05D008098 4.2e-33 147.1 352 30.7
Oeu030353.1 Olea europaea HOM05D006455 ORTHO05D008098 1.3e-26 125.6 337 30.3
Cre03.g197250 Chlamydomonas reinhardtii HOM05D006455 ORTHO05D008098 1.4e-23 115.5 222 33.8
Zm00001eb128090 Zea mays HOM05D006455 ORTHO05D008098 3.1e-12 77.8 171 28.7
Zm00001eb128100 Zea mays HOM05D006455 ORTHO05D008098 5.5e-09 67.0 119 34.5
Manes.12G057504 Manihot esculenta HOM05D006455 ORTHO05D008098 1.6e-08 65.5 197 29.9
Zm00001eb274660 Zea mays HOM05D006455 ORTHO05D008098 2.3e-07 61.6 119 32.8


User provided reference genes

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