Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.3e-108 396.4 201 100.0
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 6.2e-45 184.9 153 61.4
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.7e-39 166.8 159 59.1
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 2.0e-35 153.3 129 57.4
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 9.2e-33 144.4 117 58.1
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 2.3e-31 139.8 122 54.1
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 3.0e-31 139.4 116 56.0
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 3.0e-31 139.4 125 56.0
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 1.1e-30 137.5 118 55.1
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.9e-30 136.7 116 57.8
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.9e-30 136.7 116 57.8
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 3.3e-30 136.0 116 56.9
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 4.3e-30 135.6 122 55.7
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 5.6e-30 135.2 117 57.3
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.2e-29 134.0 123 54.5
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 1.6e-29 133.7 117 56.4
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 1.6e-29 133.7 119 56.3
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 2.1e-29 133.3 119 56.3
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 2.1e-29 133.3 121 52.9
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 2.8e-29 132.9 123 52.8
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 3.6e-29 132.5 117 57.3
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 3.6e-29 132.5 119 57.1
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 3.6e-29 132.5 119 57.1
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 3.6e-29 132.5 120 55.0
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 4.7e-29 132.1 123 54.5
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 4.7e-29 132.1 119 55.5
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 6.2e-29 131.7 119 56.3
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 6.2e-29 131.7 123 52.0
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 6.2e-29 131.7 119 55.5
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 8.1e-29 131.3 123 52.8
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 8.1e-29 131.3 129 50.4
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 8.1e-29 131.3 123 52.8
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 8.1e-29 131.3 123 52.8
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 8.1e-29 131.3 119 55.5
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 1.1e-28 131.0 119 56.3
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 1.1e-28 131.0 119 53.8
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.1e-28 131.0 119 54.6
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 1.1e-28 131.0 123 52.8
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 1.4e-28 130.6 117 54.7
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.4e-28 130.6 116 53.4
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 1.4e-28 130.6 140 50.0
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 1.4e-28 130.6 120 55.0
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 1.4e-28 130.6 119 58.0
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 1.8e-28 130.2 117 54.7
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 1.8e-28 130.2 126 55.6
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.8e-28 130.2 116 58.6
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.8e-28 130.2 121 52.9
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 1.8e-28 130.2 116 56.0
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 1.8e-28 130.2 118 55.9
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 2.4e-28 129.8 116 51.7
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 2.4e-28 129.8 122 50.8
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 2.4e-28 129.8 122 56.6
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 3.1e-28 129.4 131 51.1
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 3.1e-28 129.4 131 51.1
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 3.1e-28 129.4 131 51.1
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 3.1e-28 129.4 116 56.0
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 4.0e-28 129.0 116 56.9
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 4.0e-28 129.0 122 52.5
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 4.0e-28 129.0 116 56.0
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 4.0e-28 129.0 116 55.2
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 5.2e-28 128.6 119 53.8
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 5.2e-28 128.6 119 54.6
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 5.2e-28 128.6 116 55.2
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 5.2e-28 128.6 123 51.2
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 5.2e-28 128.6 119 52.9
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 6.8e-28 128.3 116 56.9
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 6.8e-28 128.3 116 57.8
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 6.8e-28 128.3 116 57.8
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 6.8e-28 128.3 119 54.6
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 8.9e-28 127.9 116 57.8
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 8.9e-28 127.9 119 52.9
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 1.2e-27 127.5 126 52.4
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.2e-27 127.5 123 52.0
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 1.2e-27 127.5 125 52.0
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 1.5e-27 127.1 119 52.9
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 2.0e-27 126.7 126 50.8
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.0e-27 126.7 123 51.2
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 2.0e-27 126.7 123 51.2
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 2.6e-27 126.3 129 50.4
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 2.6e-27 126.3 129 50.4
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 2.6e-27 126.3 117 53.0
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 2.6e-27 126.3 119 52.9
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 3.4e-27 125.9 138 47.8
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 3.4e-27 125.9 117 53.0
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 3.4e-27 125.9 119 56.3
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 3.4e-27 125.9 120 51.7
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 4.4e-27 125.6 119 55.5
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 4.4e-27 125.6 119 53.8
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 5.8e-27 125.2 119 52.1
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 5.8e-27 125.2 123 51.2
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 5.8e-27 125.2 121 52.1
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 5.8e-27 125.2 119 52.1
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 5.8e-27 125.2 116 55.2
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 7.6e-27 124.8 122 51.6
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 9.9e-27 124.4 116 53.4
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 9.9e-27 124.4 117 53.0
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 9.9e-27 124.4 122 48.4
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.7e-26 123.6 116 50.9
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 1.7e-26 123.6 116 51.7
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 2.2e-26 123.2 122 49.2
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 2.2e-26 123.2 120 50.8
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 2.9e-26 122.9 142 45.8
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 2.9e-26 122.9 119 53.8
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 2.9e-26 122.9 123 52.0
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 2.9e-26 122.9 116 54.3
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 2.9e-26 122.9 116 51.7
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 2.9e-26 122.9 127 50.4
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 3.8e-26 122.5 116 52.6
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 4.9e-26 122.1 131 48.9
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 4.9e-26 122.1 121 48.8
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 6.4e-26 121.7 116 53.4
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 8.4e-26 121.3 163 41.7
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 8.4e-26 121.3 116 50.9
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 8.4e-26 121.3 119 52.9
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 1.1e-25 120.9 116 50.9
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 1.1e-25 120.9 120 50.0
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 1.1e-25 120.9 116 50.0
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 1.4e-25 120.6 120 53.3
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 1.9e-25 120.2 120 49.2
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 1.9e-25 120.2 125 46.4
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 2.4e-25 119.8 120 49.2
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 3.2e-25 119.4 121 49.6
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 3.2e-25 119.4 121 49.6
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 3.2e-25 119.4 122 46.7
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 4.2e-25 119.0 117 48.7
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 5.4e-25 118.6 120 49.2
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 7.1e-25 118.2 117 49.6
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 7.1e-25 118.2 130 42.3
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.6e-24 117.1 118 52.5
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.6e-24 117.1 117 49.6
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 1.6e-24 117.1 117 48.7
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.6e-24 117.1 133 47.4
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 2.1e-24 116.7 123 48.8
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 6.0e-24 115.2 120 47.5
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 6.0e-24 115.2 98 56.1
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 6.0e-24 115.2 110 53.6
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 6.0e-24 115.2 117 48.7
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 7.8e-24 114.8 108 53.7
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 1.0e-23 114.4 120 48.3
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 1.3e-23 114.0 117 51.3
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 2.3e-23 113.2 124 46.8
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 3.9e-23 112.5 98 52.0
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 3.9e-23 112.5 117 48.7
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 3.9e-23 112.5 117 50.4
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 3.9e-23 112.5 118 46.6
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 3.9e-23 112.5 108 50.9
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 6.6e-23 111.7 96 53.1
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 6.6e-23 111.7 119 46.2
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.1e-22 110.9 117 47.0
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 4.3e-22 109.0 98 50.0
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 4.3e-22 109.0 135 43.0
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 7.3e-22 108.2 120 45.0
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 3.6e-21 105.9 110 51.8
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 4.7e-21 105.5 90 54.4
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 6.2e-21 105.1 119 49.6
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 4.4e-19 99.0 116 46.6
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 4.9e-18 95.5 129 43.4
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 1.4e-17 94.0 123 43.1
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 3.2e-17 92.8 109 42.2
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 7.1e-17 91.7 120 42.5
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 6.6e-15 85.1 56 62.5
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 4.3e-14 82.4 55 65.5
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 9.6e-14 81.3 68 55.9
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.6e-11 73.2 52 65.4
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 7.6e-11 71.6 48 68.8
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 1.1e-09 67.8 77 45.5
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.9e-06 57.0 84 42.9


User provided reference genes

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