Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0109s0023 Marchantia polymorpha HOM05D003641 ORTHO05D004915 3.5e-205 718.0 351 100.0
Pp3c15_21400 Physcomitrium patens HOM05D003641 ORTHO05D004915 6.6e-143 511.1 354 68.4
SMO203G0054 Selaginella moellendorffii HOM05D003641 ORTHO05D004915 1.9e-142 509.6 351 67.8
Pp3c9_15400 Physcomitrium patens HOM05D003641 ORTHO05D004915 1.2e-141 506.9 354 67.5
AagrBONN_evm.TU.Sc2ySwM_344.3694 Anthoceros agrestis HOM05D003641 ORTHO05D004915 5.4e-137 491.5 351 65.8
ATR0598G178 Amborella trichopoda HOM05D003641 ORTHO05D004915 3.3e-134 482.3 354 66.7
TWI53G2154 Tripterygium wilfordii HOM05D003641 ORTHO05D004915 1.3e-130 470.3 351 63.8
TWI74G1529 Tripterygium wilfordii HOM05D003641 ORTHO05D004915 1.7e-130 469.9 351 63.8
Potri.006G194400 Populus trichocarpa HOM05D003641 ORTHO05D004915 2.9e-130 469.2 351 64.7
CsaV3_3G038670 Cucumis sativus L. HOM05D003641 ORTHO05D004915 4.9e-130 468.4 353 64.0
Sabra06G0149100 Salix brachista HOM05D003641 ORTHO05D004915 8.3e-130 467.6 351 64.7
PGSC0003DMG400011447 Solanum tuberosum HOM05D003641 ORTHO05D004915 8.3e-130 467.6 353 65.2
CDE05G2508 Ceratophyllum demersum HOM05D003641 ORTHO05D004915 1.1e-129 467.2 351 63.5
Aqoxy1G00140 Aquilegia oxysepala HOM05D003641 ORTHO05D004915 1.4e-129 466.8 356 62.9
ClCG10G017650 Citrullus lanatus HOM05D003641 ORTHO05D004915 1.4e-129 466.8 352 63.9
Solyc10g078930.2 Solanum lycopersicum HOM05D003641 ORTHO05D004915 1.9e-129 466.5 353 64.6
TAR633G0428 Trochodendron aralioides HOM05D003641 ORTHO05D004915 1.9e-129 466.5 351 64.7
DCAR_017036 Daucus carota HOM05D003641 ORTHO05D004915 2.4e-129 466.1 355 64.5
Sc13g0002360 Simmondsia chinensis HOM05D003641 ORTHO05D004915 3.2e-129 465.7 351 62.1
MD14G1054700 Malus domestica HOM05D003641 ORTHO05D004915 5.4e-129 464.9 352 63.4
Sopen10g029550 Solanum pennellii HOM05D003641 ORTHO05D004915 7.0e-129 464.5 353 64.6
CDE11G0833 Ceratophyllum demersum HOM05D003641 ORTHO05D004915 2.0e-128 463.0 352 63.4
FvH4_6g21990 Fragaria vesca HOM05D003641 ORTHO05D004915 4.6e-128 461.8 351 64.4
FAN14G0097 Fragaria x ananassa HOM05D003641 ORTHO05D004915 4.6e-128 461.8 351 64.4
Hund24813 Selenicereus undatus HOM05D003641 ORTHO05D004915 4.6e-128 461.8 355 63.7
Sabra16G0062900 Salix brachista HOM05D003641 ORTHO05D004915 7.8e-128 461.1 351 63.0
Ciclev10012043m.g Citrus clementina HOM05D003641 ORTHO05D004915 1.0e-127 460.7 364 62.1
Manes.09G037400 Manihot esculenta HOM05D003641 ORTHO05D004915 1.0e-127 460.7 351 62.7
CAN.G960.10 Capsicum annuum HOM05D003641 ORTHO05D004915 1.7e-127 459.9 356 65.2
MBI19_g17419_MAGBIO Magnolia biondii HOM05D003641 ORTHO05D004915 5.0e-127 458.4 351 62.4
Thecc.05G174300 Theobroma cacao HOM05D003641 ORTHO05D004915 5.0e-127 458.4 353 64.0
HanXRQChr01g0010591 Helianthus annuus HOM05D003641 ORTHO05D004915 6.6e-127 458.0 353 63.2
TAR636G0728 Trochodendron aralioides HOM05D003641 ORTHO05D004915 6.6e-127 458.0 355 62.3
Atru.chr8.1148 Acer truncatum HOM05D003641 ORTHO05D004915 1.5e-126 456.8 355 62.0
Aa31sc80G90 Aethionema arabicum HOM05D003641 ORTHO05D004915 1.5e-126 456.8 360 61.4
Lju124A24T32 Lonicera japonica HOM05D003641 ORTHO05D004915 1.5e-126 456.8 351 62.7
AUR62011998 Chenopodium quinoa HOM05D003641 ORTHO05D004915 4.3e-126 455.3 354 60.7
MELO3C009611.2 Cucumis melo HOM05D003641 ORTHO05D004915 4.3e-126 455.3 353 62.3
Cpa.g.sc85.60 Carica papaya HOM05D003641 ORTHO05D004915 5.6e-126 454.9 357 61.6
CiPaw.09G029000 Carya illinoinensis HOM05D003641 ORTHO05D004915 5.6e-126 454.9 352 61.9
Manes.08G042800 Manihot esculenta HOM05D003641 ORTHO05D004915 5.6e-126 454.9 356 61.5
Potri.016G060100 Populus trichocarpa HOM05D003641 ORTHO05D004915 1.2e-125 453.8 355 61.7
Cfa020150 Carpinus fangiana HOM05D003641 ORTHO05D004915 1.6e-125 453.4 354 62.1
Sed0007356 Sechium edule HOM05D003641 ORTHO05D004915 2.1e-125 453.0 352 61.6
COL.COLO4_29349 Corchorus olitorius HOM05D003641 ORTHO05D004915 2.8e-125 452.6 352 61.9
Haze_20012 Corylus avellana HOM05D003641 ORTHO05D004915 2.8e-125 452.6 354 61.9
Duzib093G1627 Durio zibethinus HOM05D003641 ORTHO05D004915 2.8e-125 452.6 353 63.2
Peaxi162Scf00258g00921 Petunia axillaris HOM05D003641 ORTHO05D004915 2.8e-125 452.6 353 61.2
Gorai.012G099600 Gossypium raimondii HOM05D003641 ORTHO05D004915 3.6e-125 452.2 358 61.5
EL10Ac3g06892 Beta vulgaris HOM05D003641 ORTHO05D004915 4.7e-125 451.8 351 61.3
CARHR086620 Cardamine hirsuta HOM05D003641 ORTHO05D004915 1.1e-124 450.7 360 61.1
Lj2A365T90 Lonicera japonica HOM05D003641 ORTHO05D004915 1.1e-124 450.7 351 61.8
Duzib128G0491 Durio zibethinus HOM05D003641 ORTHO05D004915 1.4e-124 450.3 353 62.0
Gohir.D04G089500 Gossypium hirsutum HOM05D003641 ORTHO05D004915 1.4e-124 450.3 358 61.5
Nitab4.5_0007274g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 1.4e-124 450.3 351 63.2
AT3G12050 Arabidopsis thaliana HOM05D003641 ORTHO05D004915 1.8e-124 449.9 361 60.7
FAN02G1826 Fragaria x ananassa HOM05D003641 ORTHO05D004915 1.8e-124 449.9 351 62.4
BraA05t22525Z Brassica rapa HOM05D003641 ORTHO05D004915 2.3e-124 449.5 351 60.7
MD12G1055300 Malus domestica HOM05D003641 ORTHO05D004915 2.3e-124 449.5 351 61.8
A05p37290 Brassica napus HOM05D003641 ORTHO05D004915 3.1e-124 449.1 353 61.2
Eucgr.A02465 Eucalyptus grandis HOM05D003641 ORTHO05D004915 4.0e-124 448.7 358 60.9
Gohir.A04G051900 Gossypium hirsutum HOM05D003641 ORTHO05D004915 4.0e-124 448.7 355 60.8
vmacro07894 Vaccinium macrocarpon HOM05D003641 ORTHO05D004915 4.0e-124 448.7 351 63.0
AL3G23660 Arabidopsis lyrata HOM05D003641 ORTHO05D004915 5.2e-124 448.4 361 59.8
RcHm_v2.0_Chr3g0479291 Rosa chinensis HOM05D003641 ORTHO05D004915 5.2e-124 448.4 351 62.1
Dinv24057 Davidia involucrata HOM05D003641 ORTHO05D004915 6.8e-124 448.0 353 60.9
SalBow6G5303 Salvia bowleyana HOM05D003641 ORTHO05D004915 8.9e-124 447.6 353 61.8
CANSAT64G0207 Cannabis sativa HOM05D003641 ORTHO05D004915 1.2e-123 447.2 361 60.1
FAN05G2657 Fragaria x ananassa HOM05D003641 ORTHO05D004915 1.5e-123 446.8 351 62.1
FAN09G3507 Fragaria x ananassa HOM05D003641 ORTHO05D004915 2.0e-123 446.4 351 61.8
Glyma.03G146100 Glycine max HOM05D003641 ORTHO05D004915 3.4e-123 445.7 357 59.7
Psat3g067000 Pisum sativum HOM05D003641 ORTHO05D004915 5.8e-123 444.9 355 60.6
Prupe.7G080100 Prunus persica HOM05D003641 ORTHO05D004915 5.8e-123 444.9 354 61.6
BcaB06g25550 Brassica carinata HOM05D003641 ORTHO05D004915 9.8e-123 444.1 351 61.3
ECA248G0025 Erigeron canadensis HOM05D003641 ORTHO05D004915 1.3e-122 443.7 353 60.9
Oeu063867.1 Olea europaea HOM05D003641 ORTHO05D004915 1.3e-122 443.7 352 61.4
Sp3g10280 Schrenkiella parvula HOM05D003641 ORTHO05D004915 1.3e-122 443.7 366 58.5
PSO135G0566 Papaver somniferum HOM05D003641 ORTHO05D004915 1.7e-122 443.4 355 60.0
AUR62015343 Chenopodium quinoa HOM05D003641 ORTHO05D004915 2.2e-122 443.0 351 60.1
Zm00001eb037640 Zea mays HOM05D003641 ORTHO05D004915 2.2e-122 443.0 354 60.2
C05p55760 Brassica napus HOM05D003641 ORTHO05D004915 2.9e-122 442.6 353 60.1
PSO724G0609 Papaver somniferum HOM05D003641 ORTHO05D004915 2.9e-122 442.6 358 59.8
QL07p024293 Quercus lobata HOM05D003641 ORTHO05D004915 2.9e-122 442.6 365 59.5
CiPaw.10G025600 Carya illinoinensis HOM05D003641 ORTHO05D004915 3.7e-122 442.2 356 59.3
Rhsim03G0004900 Rhododendron simsii HOM05D003641 ORTHO05D004915 3.7e-122 442.2 358 62.0
Ca_08533_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 4.9e-122 441.8 361 59.0
Medtr7g093500 Medicago truncatula HOM05D003641 ORTHO05D004915 4.9e-122 441.8 356 59.6
PGR004G2452 Punica granatum HOM05D003641 ORTHO05D004915 4.9e-122 441.8 354 59.0
Oeu006209.1 Olea europaea HOM05D003641 ORTHO05D004915 1.1e-121 440.7 368 59.0
CSS0018208 Camellia sinensis var. sinensis HOM05D003641 ORTHO05D004915 1.4e-121 440.3 351 61.0
Hma1.2p1_0676F.1_g201930 Hydrangea macrophylla HOM05D003641 ORTHO05D004915 1.9e-121 439.9 351 61.3
SGA_v2.0_scaffold105G30499 Striga asiatica HOM05D003641 ORTHO05D004915 1.9e-121 439.9 359 60.7
Thhalv10021006m.g Eutrema salsugineum HOM05D003641 ORTHO05D004915 2.4e-121 439.5 360 58.6
Ca_12045_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 4.1e-121 438.7 352 59.9
Lj1g0002782 Lotus japonicus HOM05D003641 ORTHO05D004915 5.4e-121 438.3 351 60.1
arahy.Tifrunner.gnm1.ann1.G8NWJQ Arachis hypogaea HOM05D003641 ORTHO05D004915 7.1e-121 438.0 360 59.7
Glyma.19G149300 Glycine max HOM05D003641 ORTHO05D004915 1.6e-120 436.8 359 59.1
HPP92_005766 Vanilla planifolia HOM05D003641 ORTHO05D004915 1.6e-120 436.8 366 59.0
arahy.Tifrunner.gnm1.ann1.86C462 Arachis hypogaea HOM05D003641 ORTHO05D004915 7.8e-120 434.5 360 59.2
THA.LOC104826776 Tarenaya hassleriana HOM05D003641 ORTHO05D004915 1.0e-119 434.1 355 58.6
MSTRG.19915 Avicennia marina HOM05D003641 ORTHO05D004915 1.3e-119 433.7 356 59.8
VMungo1383G0826 Vigna mungo HOM05D003641 ORTHO05D004915 1.7e-119 433.3 356 58.1
Lsat_1_v5_gn_5_164500 Lactuca sativa HOM05D003641 ORTHO05D004915 2.3e-119 433.0 345 60.6
Os08g0464000 Oryza sativa ssp. japonica HOM05D003641 ORTHO05D004915 2.3e-119 433.0 359 58.2
Zm00001eb177410 Zea mays HOM05D003641 ORTHO05D004915 2.3e-119 433.0 356 59.0
TPR.G30301 Trifolium pratense HOM05D003641 ORTHO05D004915 3.0e-119 432.6 351 58.4
Migut.J01850 Erythranthe guttata HOM05D003641 ORTHO05D004915 3.9e-119 432.2 357 59.7
HPP92_009321 Vanilla planifolia HOM05D003641 ORTHO05D004915 5.1e-119 431.8 362 59.1
Nitab4.5_0001137g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 8.6e-119 431.0 352 61.1
Phvul.001G143800 Phaseolus vulgaris HOM05D003641 ORTHO05D004915 1.9e-118 429.9 361 57.1
THA.LOC104809934 Tarenaya hassleriana HOM05D003641 ORTHO05D004915 2.5e-118 429.5 352 58.2
Cc06_g15710 Coffea canephora HOM05D003641 ORTHO05D004915 1.2e-117 427.2 353 59.2
Hund19209 Selenicereus undatus HOM05D003641 ORTHO05D004915 1.2e-117 427.2 352 57.7
SGA_v2.0_scaffold69G23056 Striga asiatica HOM05D003641 ORTHO05D004915 1.2e-117 427.2 355 59.4
Lj5g0013930 Lotus japonicus HOM05D003641 ORTHO05D004915 2.1e-117 426.4 361 58.4
Carub.0003s1139 Capsella rubella HOM05D003641 ORTHO05D004915 6.2e-117 424.9 363 57.0
Lalb_Chr18g0047991 Lupinus albus HOM05D003641 ORTHO05D004915 6.2e-117 424.9 358 57.8
Ah.04g152830 Amaranthus hybridus HOM05D003641 ORTHO05D004915 8.1e-117 424.5 335 61.2
Nitab4.5_0000105g0210 Nicotiana tabacum HOM05D003641 ORTHO05D004915 8.1e-117 424.5 349 61.9
BolC5t34243H Brassica oleracea HOM05D003641 ORTHO05D004915 5.2e-116 421.8 396 53.5
Medtr0136s0060 Medicago truncatula HOM05D003641 ORTHO05D004915 6.8e-116 421.4 353 57.2
Nitab4.5_0002343g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 9.9e-115 417.5 356 60.4
Glyma.09G109200 Glycine max HOM05D003641 ORTHO05D004915 1.3e-114 417.2 354 57.1
unitig_899.g15167 Utricularia gibba HOM05D003641 ORTHO05D004915 2.2e-114 416.4 352 58.2
Phvul.007G261100 Phaseolus vulgaris HOM05D003641 ORTHO05D004915 3.5e-112 409.1 354 55.9
Glyma.02G171100 Glycine max HOM05D003641 ORTHO05D004915 1.3e-111 407.1 351 55.0
BcaC05g29294 Brassica carinata HOM05D003641 ORTHO05D004915 1.1e-110 404.1 353 56.7
VMungo0720G0815 Vigna mungo HOM05D003641 ORTHO05D004915 3.4e-107 392.5 353 53.5
unitig_746.g26803 Utricularia gibba HOM05D003641 ORTHO05D004915 5.8e-107 391.7 340 57.6
Nn7g35972 Nelumbo nucifera HOM05D003641 ORTHO05D004915 6.6e-103 378.3 303 60.7
Nn7g35971 Nelumbo nucifera HOM05D003641 ORTHO05D004915 8.7e-103 377.9 289 65.4
Actinidia22049 Actinidia chinensis HOM05D003641 ORTHO05D004915 7.3e-94 348.2 352 54.3
Psat6g123080 Pisum sativum HOM05D003641 ORTHO05D004915 2.2e-90 336.7 296 54.7
GSVIVG01033476001 Vitis vinifera HOM05D003641 ORTHO05D004915 3.3e-86 322.8 351 47.9
TPR.G35793 Trifolium pratense HOM05D003641 ORTHO05D004915 1.8e-84 317.0 294 52.0
Actinidia14376 Actinidia chinensis HOM05D003641 ORTHO05D004915 3.1e-84 316.2 275 59.6
Gorai.012G099500 Gossypium raimondii HOM05D003641 ORTHO05D004915 2.9e-82 309.7 327 49.5
PRCOL_00005901 Prasinoderma coloniale HOM05D003641 ORTHO05D004915 1.5e-78 297.4 356 44.4
MCO07G236 Micromonas commoda HOM05D003641 ORTHO05D004915 2.3e-71 273.5 350 43.1
Cre03.g199300 Chlamydomonas reinhardtii HOM05D003641 ORTHO05D004915 1.3e-69 267.7 356 39.3
SEGI_39925 Sequoiadendron giganteum HOM05D003641 ORTHO05D004915 4.5e-67 259.2 276 49.3
Gohir.D04G089400 Gossypium hirsutum HOM05D003641 ORTHO05D004915 9.4e-65 251.5 212 60.4
BcaC09g48210 Brassica carinata HOM05D003641 ORTHO05D004915 2.3e-55 220.3 246 50.4
Gohir.A04G052026 Gossypium hirsutum HOM05D003641 ORTHO05D004915 4.1e-52 209.5 157 61.1
Gohir.A04G052000 Gossypium hirsutum HOM05D003641 ORTHO05D004915 1.2e-48 198.0 175 57.7
Actinidia32404 Actinidia chinensis HOM05D003641 ORTHO05D004915 1.0e-47 194.9 115 79.1
arahy.Tifrunner.gnm1.ann1.EPN7T6 Arachis hypogaea HOM05D003641 ORTHO05D004915 9.7e-46 188.3 140 65.0
arahy.Tifrunner.gnm1.ann1.VQQW03 Arachis hypogaea HOM05D003641 ORTHO05D004915 2.4e-44 183.7 125 70.4
SEGI_05882 Sequoiadendron giganteum HOM05D003641 ORTHO05D004915 3.4e-30 136.7 164 44.5
Ca_31327_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 3.7e-29 133.3 85 65.9
Ca_14569_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 1.1e-28 131.7 85 65.9
Ca_20435_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 2.4e-28 130.6 85 64.7
Ca_09720_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 4.5e-27 126.3 85 63.5
arahy.Tifrunner.gnm1.ann1.20Y790 Arachis hypogaea HOM05D003641 ORTHO05D004915 8.9e-23 112.1 107 55.1
Glyma.09G095600 Glycine max HOM05D003641 ORTHO05D004915 8.9e-23 112.1 80 61.2
Hund07686 Selenicereus undatus HOM05D003641 ORTHO05D011049 2.6e-22 110.5 186 36.0
HanXRQChr03g0083061 Helianthus annuus HOM05D003641 ORTHO05D004915 4.4e-22 109.8 138 41.3
Dinv18648 Davidia involucrata HOM05D003641 ORTHO05D004915 6.4e-21 105.9 58 82.8
Dinv26263 Davidia involucrata HOM05D003641 ORTHO05D004915 6.4e-21 105.9 58 82.8
Ca_12039_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 1.1e-20 105.1 58 81.0
MCO11G399 Micromonas commoda HOM05D003641 ORTHO05D044219 2.4e-20 104.0 167 35.3
Dinv18651 Davidia involucrata HOM05D003641 ORTHO05D004915 4.1e-20 103.2 58 81.0
Hund07687 Selenicereus undatus HOM05D003641 ORTHO05D021213 5.4e-20 102.8 186 36.0
CBR_g18730 Chara braunii HOM05D003641 ORTHO05D004915 4.6e-19 99.8 55 80.0
Nn8g39306 Nelumbo nucifera HOM05D003641 ORTHO05D004915 2.3e-18 97.4 56 78.6
EL10Ac8g19334 Beta vulgaris HOM05D003641 ORTHO05D027013 5.2e-15 86.3 76 51.3
MCO13G471 Micromonas commoda HOM05D003641 ORTHO05D049026 2.0e-14 84.3 199 31.7
Cre08.g358539 Chlamydomonas reinhardtii HOM05D003641 ORTHO05D044219 7.5e-14 82.4 119 38.7
arahy.Tifrunner.gnm1.ann1.XYD4PT Arachis hypogaea HOM05D003641 ORTHO05D038899 8.3e-13 79.0 62 61.3
Ca_03268_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 2.4e-12 77.4 82 50.0
Ca_20824_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 1.3e-10 71.6 37 73.0
SGA_v2.0_scaffold200G41266 Striga asiatica HOM05D037212 ORTHO05D027013 2.3e-10 70.9 76 46.1
TWI14G1341 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 8.6e-10 68.9 107 39.3
CsaV3_5G015400 Cucumis sativus L. HOM05D003641 ORTHO05D004915 1.1e-09 68.6 50 60.0
BolC1t05367H Brassica oleracea HOM05D003641 ORTHO05D038899 1.5e-09 68.2 58 58.6
PRCOL_00004577 Prasinoderma coloniale HOM05D003641 ORTHO05D049026 1.9e-09 67.8 197 26.9
VMungo0464G0530 Vigna mungo HOM05D003641 ORTHO05D004915 1.2e-06 58.5 61 44.3
PGSC0003DMG400035352 Solanum tuberosum HOM05D003641 ORTHO05D004915 5.8e-06 56.2 82 41.5
Peaxi162Scf00003g04539 Petunia axillaris HOM05D000312 ORTHO05D000221 7.5e-06 55.8 49 55.1


User provided reference genes

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