Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0108s0041 Marchantia polymorpha HOM05D004787 ORTHO05D006972 1.7e-299 1031.9 546 100.0
Pp3c23_13180 Physcomitrium patens HOM05D004787 ORTHO05D006972 3.2e-213 745.3 549 72.9
Pp3c23_13183 Physcomitrium patens HOM05D004787 ORTHO05D006972 3.2e-213 745.3 549 72.9
Nn4g24844 Nelumbo nucifera HOM05D004787 ORTHO05D006972 6.9e-200 701.0 513 71.0
AagrBONN_evm.TU.Sc2ySwM_228.1941__1942 Anthoceros agrestis HOM05D004787 ORTHO05D006972 5.0e-198 694.9 489 76.5
CDE05G1440 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 3.2e-197 692.2 498 69.9
Thecc.04G058600 Theobroma cacao HOM05D004787 ORTHO05D006972 2.1e-196 689.5 513 69.4
PSO063G5381 Papaver somniferum HOM05D004787 ORTHO05D006972 4.7e-196 688.3 501 69.9
SEGI_38823 Sequoiadendron giganteum HOM05D004787 ORTHO05D006972 4.7e-196 688.3 519 68.2
Duzib138G0253 Durio zibethinus HOM05D004787 ORTHO05D006972 7.9e-196 687.6 500 70.8
PSO782G3524 Papaver somniferum HOM05D004787 ORTHO05D006972 3.0e-195 685.6 501 69.9
Manes.02G082200 Manihot esculenta HOM05D004787 ORTHO05D006972 3.9e-195 685.3 544 66.0
Gohir.A12G052700 Gossypium hirsutum HOM05D004787 ORTHO05D006972 5.2e-195 684.9 500 70.4
Gorai.008G054500 Gossypium raimondii HOM05D004787 ORTHO05D006972 8.8e-195 684.1 500 70.2
THA.LOC104820926 Tarenaya hassleriana HOM05D004787 ORTHO05D006972 1.5e-194 683.3 543 65.9
Gohir.D12G051200 Gossypium hirsutum HOM05D004787 ORTHO05D006972 2.0e-194 682.9 500 70.0
TAR629G0710 Trochodendron aralioides HOM05D004787 ORTHO05D006972 3.3e-194 682.2 500 70.6
Ca_15115_v3 Cicer arietinum L. HOM05D004787 ORTHO05D006972 1.7e-193 679.9 504 68.5
CsaV3_5G024370 Cucumis sativus L. HOM05D004787 ORTHO05D006972 3.7e-193 678.7 514 68.1
Ciclev10011482m.g Citrus clementina HOM05D004787 ORTHO05D006972 6.3e-193 677.9 503 69.8
TWI53G0480 Tripterygium wilfordii HOM05D004787 ORTHO05D006972 1.1e-192 677.2 506 68.0
Hma1.2p1_0034F.1_g021480 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 1.8e-192 676.4 522 66.9
MELO3C025106.2 Cucumis melo HOM05D004787 ORTHO05D006972 3.1e-192 675.6 514 68.1
Aqoxy3G04198 Aquilegia oxysepala HOM05D004787 ORTHO05D006972 7.0e-192 674.5 501 69.3
Lj6g0012338 Lotus japonicus HOM05D004787 ORTHO05D006972 1.2e-191 673.7 505 67.5
TPR.G37333 Trifolium pratense HOM05D004787 ORTHO05D006972 1.2e-191 673.7 503 67.8
arahy.Tifrunner.gnm1.ann1.0Y5IZW Arachis hypogaea HOM05D004787 ORTHO05D006972 2.0e-191 672.9 526 66.3
ClCG01G008420 Citrullus lanatus HOM05D004787 ORTHO05D006972 2.0e-191 672.9 519 67.2
Eucgr.F02919 Eucalyptus grandis HOM05D004787 ORTHO05D006972 2.0e-191 672.9 500 68.0
Psat5g143840 Pisum sativum HOM05D004787 ORTHO05D006972 2.0e-191 672.9 519 65.3
Atru.chr1.1965 Acer truncatum HOM05D004787 ORTHO05D006972 3.5e-191 672.2 506 68.2
Glyma.18G045800 Glycine max HOM05D004787 ORTHO05D006972 4.5e-191 671.8 501 68.1
QL02p054528 Quercus lobata HOM05D004787 ORTHO05D006972 1.7e-190 669.8 505 68.1
Medtr3g064180 Medicago truncatula HOM05D004787 ORTHO05D006972 2.2e-190 669.5 516 65.7
arahy.Tifrunner.gnm1.ann1.QP3PIR Arachis hypogaea HOM05D004787 ORTHO05D006972 1.1e-189 667.2 530 65.8
MD11G1181900 Malus domestica HOM05D004787 ORTHO05D006972 1.1e-189 667.2 519 66.1
Dinv28256 Davidia involucrata HOM05D004787 ORTHO05D006972 4.2e-189 665.2 512 68.4
PGR004G1381 Punica granatum HOM05D004787 ORTHO05D006972 5.5e-189 664.8 501 67.3
CSS0018052 Camellia sinensis var. sinensis HOM05D004787 ORTHO05D006972 7.2e-189 664.5 506 67.0
Cfa008000 Carpinus fangiana HOM05D004787 ORTHO05D006972 9.4e-189 664.1 520 66.9
Lalb_Chr18g0053891 Lupinus albus HOM05D004787 ORTHO05D006972 2.7e-188 662.5 500 66.8
RcHm_v2.0_Chr3g0487991 Rosa chinensis HOM05D004787 ORTHO05D006972 6.1e-188 661.4 499 67.1
Phvul.006G085100 Phaseolus vulgaris HOM05D004787 ORTHO05D006972 8.0e-188 661.0 501 67.1
MSTRG.15622 Avicennia marina HOM05D004787 ORTHO05D006972 1.4e-187 660.2 511 66.9
AL3G12100 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 3.0e-187 659.1 502 66.9
Hund06861 Selenicereus undatus HOM05D004787 ORTHO05D006972 4.0e-187 658.7 538 64.5
Carub.0003s0181 Capsella rubella HOM05D004787 ORTHO05D006972 6.7e-187 657.9 502 66.5
Prupe.3G013000 Prunus persica HOM05D004787 ORTHO05D006972 6.7e-187 657.9 525 64.2
AT3G02710 Arabidopsis thaliana HOM05D004787 ORTHO05D006972 2.0e-186 656.4 510 65.9
Thhalv10020476m.g Eutrema salsugineum HOM05D004787 ORTHO05D006972 2.0e-186 656.4 501 66.5
CiPaw.03G008000 Carya illinoinensis HOM05D004787 ORTHO05D006972 3.3e-186 655.6 517 66.5
Sopen02g026040 Solanum pennellii HOM05D004787 ORTHO05D006972 3.7e-185 652.1 504 66.3
Sp3g01740 Schrenkiella parvula HOM05D004787 ORTHO05D006972 4.8e-185 651.7 504 66.1
CARHR076710 Cardamine hirsuta HOM05D004787 ORTHO05D006972 6.3e-185 651.4 502 66.3
CBR_g66787 Chara braunii HOM05D004787 ORTHO05D006972 8.2e-185 651.0 521 65.1
Lsat_1_v5_gn_3_69520 Lactuca sativa HOM05D004787 ORTHO05D006972 1.1e-184 650.6 519 66.1
Solyc02g081410.3 Solanum lycopersicum HOM05D004787 ORTHO05D006972 1.1e-184 650.6 504 66.3
PGSC0003DMG400019729 Solanum tuberosum HOM05D004787 ORTHO05D006972 2.4e-184 649.4 504 66.1
FvH4_1g27560 Fragaria vesca HOM05D004787 ORTHO05D006972 9.1e-184 647.5 513 64.3
BNapus_Darmor_BZH_scaffold_99p00220 Brassica napus HOM05D004787 ORTHO05D006972 5.9e-183 644.8 512 64.6
ECA246G0632 Erigeron canadensis HOM05D004787 ORTHO05D006972 1.7e-182 643.3 515 64.1
Migut.K00983 Erythranthe guttata HOM05D004787 ORTHO05D006972 1.7e-182 643.3 500 65.8
Aa31LG5G13180 Aethionema arabicum HOM05D004787 ORTHO05D006972 2.2e-182 642.9 542 62.5
HanXRQChr16g0532401 Helianthus annuus HOM05D004787 ORTHO05D006972 5.0e-182 641.7 506 65.2
MBI06_g02537_MAGBIO Magnolia biondii HOM05D004787 ORTHO05D006972 6.5e-182 641.3 553 62.4
SMO276G0035 Selaginella moellendorffii HOM05D004787 ORTHO05D006972 1.1e-181 640.6 486 69.8
EL10Ac4g08906 Beta vulgaris HOM05D004787 ORTHO05D006972 1.5e-181 640.2 517 65.8
Potri.004G076600 Populus trichocarpa HOM05D004787 ORTHO05D006972 3.2e-181 639.0 530 63.2
FAN28G1537 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.6e-180 636.7 527 62.4
BolC1t05882H Brassica oleracea HOM05D004787 ORTHO05D006972 4.7e-180 635.2 535 62.4
SGA_v2.0_scaffold45G17100 Striga asiatica HOM05D004787 ORTHO05D006972 8.0e-180 634.4 519 64.0
BraA01t04622Z Brassica rapa HOM05D004787 ORTHO05D006972 2.3e-179 632.9 528 62.5
FAN19G0382 Fragaria x ananassa HOM05D004787 ORTHO05D006972 3.7e-177 625.5 513 63.0
Lj4C250G12 Lonicera japonica HOM05D004787 ORTHO05D006972 1.4e-176 623.6 511 63.6
AUR62037503 Chenopodium quinoa HOM05D004787 ORTHO05D006972 3.1e-176 622.5 523 62.7
FAN26G3076 Fragaria x ananassa HOM05D004787 ORTHO05D006972 7.7e-175 617.8 515 62.5
FAN28G1012 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.0e-174 617.5 515 62.1
vmacro20447 Vaccinium macrocarpon HOM05D004787 ORTHO05D006972 1.0e-174 617.5 598 56.9
Peaxi162Scf00344g02023 Petunia axillaris HOM05D004787 ORTHO05D006972 1.1e-173 614.0 501 63.5
VMungo0540G0637 Vigna mungo HOM05D004787 ORTHO05D006972 1.5e-173 613.6 501 64.1
Os02g0831300 Oryza sativa ssp. japonica HOM05D004787 ORTHO05D006972 1.9e-173 613.2 517 62.5
Haze_14069 Corylus avellana HOM05D004787 ORTHO05D006972 4.2e-173 612.1 537 62.2
Ah.04g162910 Amaranthus hybridus HOM05D004787 ORTHO05D006972 1.6e-172 610.1 503 64.0
DCAR_003396 Daucus carota HOM05D004787 ORTHO05D006972 2.8e-172 609.4 542 60.0
Zm00001eb259490 Zea mays HOM05D004787 ORTHO05D006972 4.7e-172 608.6 517 61.7
Rhsim07G0211400 Rhododendron simsii HOM05D004787 ORTHO05D006972 5.2e-171 605.1 508 62.8
Actinidia40400 Actinidia chinensis HOM05D004787 ORTHO05D006972 8.8e-171 604.4 503 63.4
CANSAT35G0608 Cannabis sativa HOM05D004787 ORTHO05D006972 3.4e-170 602.4 501 63.3
Sed0001995 Sechium edule HOM05D004787 ORTHO05D006972 3.1e-168 595.9 445 68.3
ATR0618G058 Amborella trichopoda HOM05D004787 ORTHO05D006972 4.1e-168 595.5 485 65.8
Nitab4.5_0003412g0040 Nicotiana tabacum HOM05D004787 ORTHO05D006972 1.6e-167 593.6 610 54.4
Sabra04G0050800 Salix brachista HOM05D004787 ORTHO05D006972 2.7e-167 592.8 522 60.3
AUR62004748 Chenopodium quinoa HOM05D004787 ORTHO05D006972 6.6e-158 561.6 527 58.4
SalBow5G5112 Salvia bowleyana HOM05D004787 ORTHO05D006972 1.2e-156 557.4 500 59.8
unitig_32.g10735 Utricularia gibba HOM05D004787 ORTHO05D006972 2.8e-156 556.2 566 53.2
Hma1.2p1_0034F.1_g021490 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 4.4e-154 548.9 424 67.5
Nitab4.5_0000483g0190 Nicotiana tabacum HOM05D004787 ORTHO05D006972 5.8e-154 548.5 595 52.8
COL.COLO4_06952 Corchorus olitorius HOM05D004787 ORTHO05D006972 5.4e-152 542.0 435 65.1
HPP92_022084 Vanilla planifolia HOM05D004787 ORTHO05D006972 5.1e-142 508.8 368 71.2
Sc09g0004590 Simmondsia chinensis HOM05D004787 ORTHO05D006972 2.4e-139 500.0 441 60.3
Oeu022144.1 Olea europaea HOM05D004787 ORTHO05D006972 1.5e-130 470.7 371 66.0
BNapus_Darmor_BZH_scaffold_122p00190 Brassica napus HOM05D004787 ORTHO05D006972 2.2e-129 466.8 358 66.5
Cpa.g.sc108.2 Carica papaya HOM05D004787 ORTHO05D006972 9.6e-125 451.4 373 64.1
CAN.G809.96 Capsicum annuum HOM05D004787 ORTHO05D006972 7.1e-120 435.3 331 66.8
Cre02.g093300 Chlamydomonas reinhardtii HOM05D004787 ORTHO05D006972 5.8e-114 415.6 515 46.6
MCO05G673 Micromonas commoda HOM05D004787 ORTHO05D006972 1.0e-110 404.8 486 47.9
Lsat_1_v5_gn_3_69560 Lactuca sativa HOM05D004787 ORTHO05D006972 3.7e-108 396.4 322 64.3
PRCOL_00000524 Prasinoderma coloniale HOM05D004787 ORTHO05D006972 2.2e-97 360.5 499 43.1
GSVIVG01001945001 Vitis vinifera HOM05D004787 ORTHO05D006972 3.1e-91 340.1 309 59.2
GSVIVG01035282001 Vitis vinifera HOM05D004787 ORTHO05D006972 6.9e-91 339.0 249 67.9
HanXRQChr16g0532221 Helianthus annuus HOM05D004787 ORTHO05D006972 5.5e-88 329.3 419 48.7
AL1G49080 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 4.8e-84 316.2 240 67.1
CDE02G3895 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 5.3e-67 259.6 218 62.8
Cc07_g12650 Coffea canephora HOM05D004787 ORTHO05D006972 5.2e-54 216.5 178 65.7
Cfa023088 Carpinus fangiana HOM05D004787 ORTHO05D006972 1.8e-51 208.0 517 32.3
PSO409G0053 Papaver somniferum HOM05D004787 ORTHO05D006972 7.5e-45 186.0 491 32.4
PSO339G1514 Papaver somniferum HOM05D004787 ORTHO05D303367 2.8e-39 167.5 483 30.2
Cpa.g.sc108.3 Carica papaya HOM05D004787 ORTHO05D006972 6.2e-39 166.4 172 53.5
PSO478G0028 Papaver somniferum HOM05D004787 ORTHO05D006972 2.4e-35 154.5 291 39.2
Oeu031707.1 Olea europaea HOM05D004787 ORTHO05D006972 1.3e-33 148.7 113 65.5
PSO675G3772 Papaver somniferum HOM05D004787 ORTHO05D302583 4.7e-31 140.2 459 29.6
Medtr8g023320 Medicago truncatula HOM05D004787 ORTHO05D006972 6.2e-31 139.8 129 57.4
PSO409G0034 Papaver somniferum HOM05D004787 ORTHO05D006972 1.7e-28 131.7 453 30.7
PSO407G0282 Papaver somniferum HOM05D004787 ORTHO05D006972 9.2e-27 125.9 464 30.8
PSO478G4874 Papaver somniferum HOM05D004787 ORTHO05D006972 6.6e-25 119.8 304 35.9
PSO063G0274 Papaver somniferum HOM05D004787 ORTHO05D006972 1.6e-23 115.2 329 33.1
PSO675G1486 Papaver somniferum HOM05D004787 ORTHO05D006972 1.6e-23 115.2 297 31.3
HPP92_022083 Vanilla planifolia HOM05D004787 ORTHO05D006972 1.4e-22 112.1 86 62.8
PSO339G2591 Papaver somniferum HOM05D004787 ORTHO05D006972 4.4e-21 107.1 275 33.5
PSO339G2032 Papaver somniferum HOM05D004787 ORTHO05D006972 5.8e-21 106.7 275 33.1
PSO675G0768 Papaver somniferum HOM05D004787 ORTHO05D302482 9.9e-21 105.9 265 30.2
PSO478G1956 Papaver somniferum HOM05D004787 ORTHO05D006972 3.2e-19 100.9 209 40.2
Zm00001eb168130 Zea mays HOM05D004787 ORTHO05D001664 3.5e-18 97.4 148 40.5
PSO198G0032 Papaver somniferum HOM05D004787 ORTHO05D006972 4.6e-18 97.1 194 38.7
PSO063G3648 Papaver somniferum HOM05D004787 ORTHO05D006972 5.1e-17 93.6 141 44.0
PSO063G0043 Papaver somniferum HOM05D004787 ORTHO05D006972 2.5e-16 91.3 353 28.9
PSO541G6299 Papaver somniferum HOM05D004787 ORTHO05D302708 3.3e-16 90.9 305 27.9
PSO541G2889 Papaver somniferum HOM05D004787 ORTHO05D303989 7.3e-16 89.7 244 28.7
PSO063G5300 Papaver somniferum HOM05D004787 ORTHO05D006972 1.6e-15 88.6 141 42.6
PSO478G2704 Papaver somniferum HOM05D004787 ORTHO05D303020 1.6e-15 88.6 360 29.2
PSO063G1019 Papaver somniferum HOM05D004787 ORTHO05D006972 3.6e-15 87.4 144 41.0
PSO063G2684 Papaver somniferum HOM05D004787 ORTHO05D304724 1.8e-14 85.1 353 28.0
PSO063G4343 Papaver somniferum HOM05D004787 ORTHO05D304254 1.2e-13 82.4 353 27.8
HanXRQChr16g0532231 Helianthus annuus HOM05D004787 ORTHO05D006972 5.8e-13 80.1 59 62.7
PSO170G0972 Papaver somniferum HOM05D004787 ORTHO05D303930 1.7e-12 78.6 245 31.8
PSO384G4943 Papaver somniferum HOM05D004787 ORTHO05D303805 3.2e-11 74.3 245 30.6
PSO384G2298 Papaver somniferum HOM05D004787 ORTHO05D006972 2.7e-10 71.2 162 36.4
Pp3c24_2440 Physcomitrium patens HOM05D004787 ORTHO05D313483 3.3e-08 64.3 75 54.7
RcHm_v2.0_Chr5g0002281 Rosa chinensis HOM05D003404 ORTHO05D029456 9.0e-06 56.2 34 67.6


User provided reference genes

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