Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0108s0037 Marchantia polymorpha HOM05D029023 ORTHO05D030122 0.0e+00 1662.5 808 100.0
Mapoly0052s0114 Marchantia polymorpha HOM05D029023 ORTHO05D030122 0.0e+00 1282.7 635 97.8
Mapoly0555s0001 Marchantia polymorpha HOM05D029023 ORTHO05D030122 4.2e-169 599.4 289 100.0
Mapoly0086s0070 Marchantia polymorpha HOM05D029023 ORTHO05D030122 1.0e-58 232.6 137 84.7
Mapoly0031s0035 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.0e-34 152.9 255 35.3
Mapoly0049s0015 Marchantia polymorpha HOM05D004348 ORTHO05D000239 3.7e-32 144.4 290 32.8
Mapoly0007s0015 Marchantia polymorpha HOM05D000005 ORTHO05D000239 1.1e-28 132.9 283 33.6
Mapoly1060s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.5e-28 132.5 291 32.3
Mapoly0041s0095 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.9e-28 132.1 266 34.6
Mapoly0893s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.2e-28 131.0 293 31.7
Mapoly0107s0021 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.8e-27 128.3 296 31.8
AagrBONN_evm.TU.Sc2ySwM_362.453 Anthoceros agrestis HOM05D002844 ORTHO05D010627 5.2e-26 124.0 255 36.1
AagrBONN_evm.TU.Sc2ySwM_340.760 Anthoceros agrestis HOM05D008597 ORTHO05D003298 7.5e-25 120.2 261 33.7
Mapoly0010s0128 Marchantia polymorpha HOM05D000005 ORTHO05D000239 9.8e-25 119.8 246 30.9
AagrBONN_evm.TU.Sc2ySwM_117.3944 Anthoceros agrestis HOM05D002844 ORTHO05D010627 1.3e-24 119.4 264 32.6
AagrBONN_evm.TU.Sc2ySwM_340.445 Anthoceros agrestis HOM05D002844 ORTHO05D010627 1.3e-24 119.4 251 34.7
AagrBONN_evm.TU.Sc2ySwM_362.417 Anthoceros agrestis HOM05D002844 ORTHO05D010627 1.3e-24 119.4 256 35.2
Mapoly0067s0036 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.7e-24 119.0 311 29.6
Mapoly0110s0039 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.7e-24 119.0 265 31.3
Mapoly0064s0093 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.8e-24 118.2 363 29.8
AagrBONN_evm.TU.Sc2ySwM_362.407 Anthoceros agrestis HOM05D002844 ORTHO05D010627 3.7e-24 117.9 252 32.1
Mapoly0200s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.1e-23 116.3 291 29.9
AagrBONN_evm.TU.Sc2ySwM_362.420 Anthoceros agrestis HOM05D002844 ORTHO05D010627 2.4e-23 115.2 258 30.6
Mapoly0067s0038 Marchantia polymorpha HOM05D000005 ORTHO05D000239 2.4e-23 115.2 283 30.7
Mapoly2546s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.1e-23 114.4 299 29.4
AagrBONN_evm.TU.Sc2ySwM_340.458 Anthoceros agrestis HOM05D002844 ORTHO05D010627 7.0e-23 113.6 268 31.7
AagrBONN_evm.TU.Sc2ySwM_340.686 Anthoceros agrestis HOM05D002844 ORTHO05D010627 7.0e-23 113.6 311 31.8
Mapoly0062s0120 Marchantia polymorpha HOM05D004348 ORTHO05D000239 7.0e-23 113.6 294 30.3
AagrBONN_evm.TU.Sc2ySwM_228.5542 Anthoceros agrestis HOM05D002844 ORTHO05D010627 1.6e-22 112.5 259 31.7
Mapoly0053s0005 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.6e-22 112.5 311 29.9
Mapoly0637s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.5e-22 110.9 271 31.0
AagrBONN_evm.TU.Sc2ySwM_117.3939 Anthoceros agrestis HOM05D002844 ORTHO05D011031 7.8e-22 110.2 250 33.2
AagrBONN_evm.TU.Sc2ySwM_362.413 Anthoceros agrestis HOM05D002844 ORTHO05D010627 1.3e-21 109.4 216 34.3
AagrBONN_evm.TU.Sc2ySwM_117.3748 Anthoceros agrestis HOM05D002844 ORTHO05D010627 2.3e-21 108.6 260 31.9
Mapoly0080s0029 Marchantia polymorpha HOM05D011080 ORTHO05D000239 2.3e-21 108.6 208 35.1
AagrBONN_evm.TU.Sc2ySwM_117.4056 Anthoceros agrestis HOM05D002844 ORTHO05D003298 3.8e-21 107.8 260 33.5
Mapoly2448s0001 Marchantia polymorpha HOM05D020945 ORTHO05D251686 6.6e-21 107.1 205 34.1
Mapoly0147s0004 Marchantia polymorpha HOM05D000242 ORTHO05D000700 1.5e-20 105.9 358 27.7
AagrBONN_evm.TU.Sc2ySwM_117.2266 Anthoceros agrestis HOM05D002844 ORTHO05D010627 3.3e-20 104.8 236 33.5
AagrBONN_evm.TU.Sc2ySwM_340.665 Anthoceros agrestis HOM05D002844 ORTHO05D010627 3.3e-20 104.8 266 28.6
AagrBONN_evm.TU.Sc2ySwM_368.199 Anthoceros agrestis HOM05D002844 ORTHO05D003298 3.3e-20 104.8 293 30.7
AagrBONN_evm.TU.Sc2ySwM_28.5 Anthoceros agrestis HOM05D002844 ORTHO05D010627 5.6e-20 104.0 258 28.7
Mapoly0020s0126 Marchantia polymorpha HOM05D000242 ORTHO05D000700 7.3e-20 103.6 263 29.3
AagrBONN_evm.TU.Sc2ySwM_158.2 Anthoceros agrestis HOM05D002844 ORTHO05D010627 9.5e-20 103.2 258 28.7
AagrBONN_evm.TU.Sc2ySwM_340.456 Anthoceros agrestis HOM05D002844 ORTHO05D010627 9.5e-20 103.2 233 32.2
Mapoly0346s0002 Marchantia polymorpha HOM05D020945 ORTHO05D254421 9.5e-20 103.2 265 29.8
AagrBONN_evm.TU.Sc2ySwM_340.451 Anthoceros agrestis HOM05D002844 ORTHO05D010627 1.2e-19 102.8 255 31.4
AagrBONN_evm.TU.Sc2ySwM_228.5544 Anthoceros agrestis HOM05D002844 ORTHO05D010627 2.8e-19 101.7 250 31.6
AagrBONN_evm.TU.Sc2ySwM_362.458 Anthoceros agrestis HOM05D002844 ORTHO05D010627 3.6e-19 101.3 237 34.2
Mapoly0067s0037 Marchantia polymorpha HOM05D011080 ORTHO05D000239 4.7e-19 100.9 287 28.9
Mapoly0397s0001 Marchantia polymorpha HOM05D020945 ORTHO05D253181 1.4e-18 99.4 290 29.7
AagrBONN_evm.TU.Sc2ySwM_340.694 Anthoceros agrestis HOM05D002844 ORTHO05D010627 5.2e-18 97.4 266 31.6
Mapoly0064s0096 Marchantia polymorpha HOM05D004348 ORTHO05D000239 6.8e-18 97.1 200 32.5
AagrBONN_evm.TU.Sc2ySwM_340.449 Anthoceros agrestis HOM05D002844 ORTHO05D003298 8.9e-18 96.7 227 32.2
AagrBONN_evm.TU.Sc2ySwM_362.461 Anthoceros agrestis HOM05D002844 ORTHO05D010627 1.2e-17 96.3 242 33.5
Mapoly0016s0164 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.5e-17 95.9 164 37.2
Mapoly0200s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 3.4e-17 94.7 306 26.5
Mapoly0108s0045 Marchantia polymorpha HOM05D020945 ORTHO05D000713 4.4e-17 94.4 302 28.5
Mapoly0147s0041 Marchantia polymorpha HOM05D000242 ORTHO05D000700 4.4e-17 94.4 206 31.1
AagrBONN_evm.TU.Sc2ySwM_368.307 Anthoceros agrestis HOM05D002844 ORTHO05D003298 9.8e-17 93.2 238 30.3
AagrBONN_evm.TU.Sc2ySwM_368.311 Anthoceros agrestis HOM05D002844 ORTHO05D010627 1.7e-16 92.4 269 26.8
AagrBONN_evm.TU.Sc2ySwM_362.2508 Anthoceros agrestis HOM05D002844 ORTHO05D010627 2.2e-16 92.0 243 30.9
Mapoly0147s0044 Marchantia polymorpha HOM05D000242 ORTHO05D000700 3.7e-16 91.3 304 26.6
AagrBONN_evm.TU.Sc2ySwM_228.5597 Anthoceros agrestis HOM05D002844 ORTHO05D010627 4.9e-16 90.9 139 36.0
Mapoly0074s0030 Marchantia polymorpha HOM05D011080 ORTHO05D254173 6.4e-16 90.5 277 30.0
AagrBONN_evm.TU.Sc2ySwM_344.4528 Anthoceros agrestis HOM05D002844 ORTHO05D010627 8.3e-16 90.1 165 33.9
AagrBONN_evm.TU.Sc2ySwM_115.4 Anthoceros agrestis HOM05D002844 ORTHO05D010627 1.4e-15 89.4 233 27.5
AagrBONN_evm.TU.Sc2ySwM_369.425 Anthoceros agrestis HOM05D002844 ORTHO05D010627 1.4e-15 89.4 228 28.1
Mapoly0120s0017 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.4e-15 89.4 231 29.4
Pp3c24_4860 Physcomitrium patens HOM05D004348 ORTHO05D000239 7.0e-15 87.0 152 31.6
AagrBONN_evm.TU.Sc2ySwM_340.715 Anthoceros agrestis HOM05D002844 ORTHO05D010627 9.2e-15 86.7 245 29.8
AagrBONN_evm.TU.Sc2ySwM_28.3 Anthoceros agrestis HOM05D002844 ORTHO05D010627 1.2e-14 86.3 267 29.2
AagrBONN_evm.TU.Sc2ySwM_344.3915 Anthoceros agrestis HOM05D002844 ORTHO05D010627 1.2e-14 86.3 156 37.2
AagrBONN_evm.TU.Sc2ySwM_369.427 Anthoceros agrestis HOM05D002844 ORTHO05D010627 1.2e-14 86.3 267 29.2
AagrBONN_evm.TU.Sc2ySwM_368.210 Anthoceros agrestis HOM05D002844 ORTHO05D010627 1.6e-14 85.9 271 29.5
AagrBONN_evm.TU.Sc2ySwM_368.360__361 Anthoceros agrestis HOM05D002844 ORTHO05D003298 3.5e-14 84.7 134 35.8
Mapoly0120s0038 Marchantia polymorpha HOM05D011080 ORTHO05D256860 4.6e-14 84.3 231 32.5
Mapoly0041s0073 Marchantia polymorpha HOM05D011080 ORTHO05D255563 3.0e-13 81.6 215 32.6
Mapoly0032s0031 Marchantia polymorpha HOM05D011080 ORTHO05D000239 2.5e-12 78.6 288 27.4
Mapoly0119s0056 Marchantia polymorpha HOM05D011080 ORTHO05D000239 3.3e-12 78.2 300 25.0
AagrBONN_evm.TU.Sc2ySwM_228.5540 Anthoceros agrestis HOM05D002844 ORTHO05D010627 5.6e-12 77.4 143 35.0
Mapoly0062s0059 Marchantia polymorpha HOM05D000005 ORTHO05D000239 5.6e-12 77.4 176 33.5
AagrBONN_evm.TU.Sc2ySwM_362.418 Anthoceros agrestis HOM05D002844 ORTHO05D010627 7.3e-12 77.0 179 31.3
Mapoly0071s0031 Marchantia polymorpha HOM05D011080 ORTHO05D000239 7.3e-12 77.0 288 25.0
Mapoly0120s0044 Marchantia polymorpha HOM05D011080 ORTHO05D253140 2.8e-11 75.1 273 30.0
Solyc04g079280.4 Solanum lycopersicum HOM05D004348 ORTHO05D006191 3.6e-11 74.7 271 26.6
Sopen04g032870 Solanum pennellii HOM05D004348 ORTHO05D006191 3.6e-11 74.7 271 26.6
PGSC0003DMG400007988 Solanum tuberosum HOM05D004348 ORTHO05D006191 1.1e-10 73.2 271 26.2
Mapoly0116s0050 Marchantia polymorpha HOM05D011080 ORTHO05D252286 8.9e-10 70.1 287 25.8
AagrBONN_evm.TU.Sc2ySwM_91.11 Anthoceros agrestis HOM05D002844 ORTHO05D010627 2.0e-09 68.9 150 31.3
SEGI_07910 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 2.0e-09 68.9 276 27.2
CAN.G371.44 Capsicum annuum HOM05D004348 ORTHO05D006191 5.8e-09 67.4 257 26.1
Thecc.08G012500 Theobroma cacao HOM05D004348 ORTHO05D006191 5.8e-09 67.4 254 24.4
vmacro21553 Vaccinium macrocarpon HOM05D004348 ORTHO05D006191 7.5e-09 67.0 299 24.1
TAR625G1112 Trochodendron aralioides HOM05D004348 ORTHO05D006191 9.8e-09 66.6 269 25.7
AagrBONN_evm.TU.Sc2ySwM_344.1636 Anthoceros agrestis HOM05D004348 ORTHO05D006191 1.3e-08 66.2 263 28.5
GSVIVG01009553001 Vitis vinifera HOM05D004348 ORTHO05D006191 1.3e-08 66.2 258 25.6
Os03g0185500 Oryza sativa ssp. japonica HOM05D004348 ORTHO05D006191 2.9e-08 65.1 169 29.6
Mapoly0120s0043 Marchantia polymorpha HOM05D011080 ORTHO05D255325 3.7e-08 64.7 251 26.7
Aqoxy5G01277 Aquilegia oxysepala HOM05D004348 ORTHO05D006191 4.9e-08 64.3 264 26.9
Ciclev10000175m.g Citrus clementina HOM05D004348 ORTHO05D006191 4.9e-08 64.3 256 25.0
Pp3c17_5660 Physcomitrium patens HOM05D004348 ORTHO05D006191 4.9e-08 64.3 271 24.7
Sp7g32110 Schrenkiella parvula HOM05D004348 ORTHO05D006191 4.9e-08 64.3 276 22.8
Cre16.g686501 Chlamydomonas reinhardtii HOM05D004348 ORTHO05D006191 6.4e-08 63.9 161 29.2
PSO675G6987 Papaver somniferum HOM05D004348 ORTHO05D006191 6.4e-08 63.9 220 25.5
Pp3c9_17530 Physcomitrium patens HOM05D031884 ORTHO05D311885 6.4e-08 63.9 232 27.2
Cc10_g04460 Coffea canephora HOM05D004348 ORTHO05D006191 8.3e-08 63.5 217 27.6
ATR1159G040 Amborella trichopoda HOM05D004348 ORTHO05D006191 1.1e-07 63.2 262 25.6
Gohir.A01G118500 Gossypium hirsutum HOM05D004348 ORTHO05D006191 1.4e-07 62.8 278 24.1
AagrBONN_evm.TU.Sc2ySwM_368.1044 Anthoceros agrestis HOM05D015991 ORTHO05D010627 1.9e-07 62.4 125 32.0
Medtr1g019960 Medicago truncatula HOM05D004348 ORTHO05D006191 1.9e-07 62.4 256 24.2
Prupe.1G440200 Prunus persica HOM05D004348 ORTHO05D006191 1.9e-07 62.4 285 22.5
AT4G34310 Arabidopsis thaliana HOM05D004348 ORTHO05D006191 2.4e-07 62.0 300 23.7
COL.COLO4_26463 Corchorus olitorius HOM05D004348 ORTHO05D006191 3.2e-07 61.6 250 24.8
Gorai.002G131100 Gossypium raimondii HOM05D004348 ORTHO05D006191 3.2e-07 61.6 277 23.8
Sed0012719 Sechium edule HOM05D004348 ORTHO05D006191 3.2e-07 61.6 256 24.6
Gohir.D01G106800 Gossypium hirsutum HOM05D004348 ORTHO05D006191 4.1e-07 61.2 278 23.7
AL7G16960 Arabidopsis lyrata HOM05D004348 ORTHO05D006191 5.4e-07 60.8 262 24.8
Nn5g30212 Nelumbo nucifera HOM05D004348 ORTHO05D006191 5.4e-07 60.8 263 25.9
PGR031G2748 Punica granatum HOM05D004348 ORTHO05D006191 5.4e-07 60.8 267 25.8
TPR.G13698 Trifolium pratense HOM05D004348 ORTHO05D006191 5.4e-07 60.8 168 26.2
Carub.0007s0605 Capsella rubella HOM05D004348 ORTHO05D006191 7.0e-07 60.5 213 25.8
Peaxi162Scf00528g00825 Petunia axillaris HOM05D004348 ORTHO05D006191 7.0e-07 60.5 168 26.8
VMungo0647G0261 Vigna mungo HOM05D004348 ORTHO05D006191 7.0e-07 60.5 257 25.3
CARHR242470 Cardamine hirsuta HOM05D004348 ORTHO05D006191 9.2e-07 60.1 261 23.8
MD15G1086600 Malus domestica HOM05D004348 ORTHO05D006191 9.2e-07 60.1 256 23.8
AagrBONN_evm.TU.Sc2ySwM_362.429 Anthoceros agrestis HOM05D002844 ORTHO05D010627 1.2e-06 59.7 222 25.7
C01p04470 Brassica napus HOM05D004348 ORTHO05D006191 1.2e-06 59.7 262 24.4
BolC1t00433H Brassica oleracea HOM05D004348 ORTHO05D006191 1.2e-06 59.7 262 24.4
Duzib093G0393 Durio zibethinus HOM05D004348 ORTHO05D006191 1.2e-06 59.7 270 23.7
Rhsim06G0047100 Rhododendron simsii HOM05D004348 ORTHO05D006191 1.2e-06 59.7 258 26.0
A01p04110 Brassica napus HOM05D004348 ORTHO05D006191 1.6e-06 59.3 262 24.4
BraA01t00399Z Brassica rapa HOM05D004348 ORTHO05D006191 1.6e-06 59.3 262 24.4
FvH4_2g34840 Fragaria vesca HOM05D004348 ORTHO05D006191 1.6e-06 59.3 255 23.5
MD08G1105600 Malus domestica HOM05D004348 ORTHO05D006191 2.0e-06 58.9 256 23.8
Aa31LG2G16180 Aethionema arabicum HOM05D004348 ORTHO05D006191 2.7e-06 58.5 173 26.6
CiPaw.16G046500 Carya illinoinensis HOM05D004348 ORTHO05D006191 3.5e-06 58.2 257 23.7
Glyma.14G081100 Glycine max HOM05D004348 ORTHO05D006191 3.5e-06 58.2 175 28.0
Lj4A53T53 Lonicera japonica HOM05D004348 ORTHO05D006191 4.6e-06 57.8 256 24.6
Phvul.001G020000 Phaseolus vulgaris HOM05D004348 ORTHO05D006191 4.6e-06 57.8 168 27.4
EL10Ac1g01783 Beta vulgaris HOM05D004348 ORTHO05D006191 6.0e-06 57.4 257 24.9
CDE10G0798 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 6.0e-06 57.4 270 24.8
Mapoly0033s0109 Marchantia polymorpha HOM05D004348 ORTHO05D006191 6.0e-06 57.4 168 28.0
Nitab4.5_0000068g0550 Nicotiana tabacum HOM05D004348 ORTHO05D006191 6.0e-06 57.4 271 24.0
Psat6g012000 Pisum sativum HOM05D004348 ORTHO05D006191 6.0e-06 57.4 167 25.7
Migut.N02696 Erythranthe guttata HOM05D004348 ORTHO05D006191 7.8e-06 57.0 276 24.3


User provided reference genes

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