Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0107s0056 Marchantia polymorpha HOM05D002381 ORTHO05D002480 3.7e-106 388.3 200 100.0
Gohir.D11G057800 Gossypium hirsutum HOM05D002381 ORTHO05D002480 8.4e-10 68.2 110 38.2
Dinv25897 Davidia involucrata HOM05D002381 ORTHO05D002480 1.1e-09 67.8 110 38.2
MBI01_g34162_MAGBIO Magnolia biondii HOM05D002381 ORTHO05D002480 1.9e-09 67.0 114 36.8
Duzib187G1409 Durio zibethinus HOM05D002381 ORTHO05D002480 2.4e-09 66.6 110 38.2
Thecc.01G116500 Theobroma cacao HOM05D002381 ORTHO05D002480 2.4e-09 66.6 115 39.1
Duzib147G1621 Durio zibethinus HOM05D002381 ORTHO05D002480 3.2e-09 66.2 115 36.5
Rhsim10G0147500 Rhododendron simsii HOM05D002381 ORTHO05D002480 3.2e-09 66.2 119 36.1
TAR376G1038 Trochodendron aralioides HOM05D002381 ORTHO05D002480 3.2e-09 66.2 113 37.2
Pp3c2_23750 Physcomitrium patens HOM05D002381 ORTHO05D002480 4.1e-09 65.9 116 34.5
FAN08G0370 Fragaria x ananassa HOM05D002381 ORTHO05D002480 5.4e-09 65.5 111 37.8
Rhsim10G0146700 Rhododendron simsii HOM05D002381 ORTHO05D002480 5.4e-09 65.5 119 36.1
Lalb_Chr02g0141541 Lupinus albus HOM05D002381 ORTHO05D002480 7.1e-09 65.1 110 39.1
CAN.G495.12 Capsicum annuum HOM05D002381 ORTHO05D002480 9.2e-09 64.7 109 37.6
Mapoly0012s0182 Marchantia polymorpha HOM05D002381 ORTHO05D002480 9.2e-09 64.7 105 39.0
GSVIVG01022271001 Vitis vinifera HOM05D002381 ORTHO05D002480 9.2e-09 64.7 115 35.7
Ciclev10026489m.g Citrus clementina HOM05D002381 ORTHO05D002480 1.6e-08 63.9 113 36.3
Gohir.A11G054300 Gossypium hirsutum HOM05D002381 ORTHO05D002480 1.6e-08 63.9 110 37.3
Lj4g0009819 Lotus japonicus HOM05D002381 ORTHO05D002480 1.6e-08 63.9 108 33.3
Atru.chr4.733 Acer truncatum HOM05D002381 ORTHO05D002480 2.1e-08 63.5 110 35.5
Hma1.2p1_0358F.1_g134720 Hydrangea macrophylla HOM05D002381 ORTHO05D002480 2.1e-08 63.5 115 34.8
Phvul.002G267000 Phaseolus vulgaris HOM05D002381 ORTHO05D002480 2.1e-08 63.5 110 36.4
Aqoxy6G00409 Aquilegia oxysepala HOM05D002381 ORTHO05D002480 2.7e-08 63.2 116 36.2
Pp3c1_16490 Physcomitrium patens HOM05D002381 ORTHO05D002480 2.7e-08 63.2 112 34.8
PGSC0003DMG400025065 Solanum tuberosum HOM05D002381 ORTHO05D002480 2.7e-08 63.2 109 36.7
vmacro12880 Vaccinium macrocarpon HOM05D002381 ORTHO05D002480 2.7e-08 63.2 119 34.5
GSVIVG01034580001 Vitis vinifera HOM05D002381 ORTHO05D002480 2.7e-08 63.2 115 36.5
Actinidia01379 Actinidia chinensis HOM05D002381 ORTHO05D002480 3.5e-08 62.8 110 36.4
Glyma.08G144000 Glycine max HOM05D002381 ORTHO05D002480 3.5e-08 62.8 110 35.5
Gohir.D03G047400 Gossypium hirsutum HOM05D002381 ORTHO05D002480 3.5e-08 62.8 114 35.1
Gorai.003G048500 Gossypium raimondii HOM05D002381 ORTHO05D002480 3.5e-08 62.8 114 35.1
Solyc04g071980.3 Solanum lycopersicum HOM05D002381 ORTHO05D002480 3.5e-08 62.8 113 36.3
Sopen04g027960 Solanum pennellii HOM05D002381 ORTHO05D002480 3.5e-08 62.8 113 36.3
VMungo0251G0460 Vigna mungo HOM05D002381 ORTHO05D002480 3.5e-08 62.8 110 35.5
COL.COLO4_03466 Corchorus olitorius HOM05D002381 ORTHO05D002480 4.6e-08 62.4 131 34.4
FAN18G4361 Fragaria x ananassa HOM05D002381 ORTHO05D002480 4.6e-08 62.4 123 35.8
Gohir.A02G136700 Gossypium hirsutum HOM05D002381 ORTHO05D002480 4.6e-08 62.4 114 36.0
Gohir.D11G227200 Gossypium hirsutum HOM05D002381 ORTHO05D002480 4.6e-08 62.4 116 37.1
Gorai.002G149700 Gossypium raimondii HOM05D002381 ORTHO05D002480 4.6e-08 62.4 116 37.1
Gorai.003G048400 Gossypium raimondii HOM05D002381 ORTHO05D002480 4.6e-08 62.4 108 38.0
Lj2A568T45 Lonicera japonica HOM05D002381 ORTHO05D002480 4.6e-08 62.4 113 37.2
Sp6g07690 Schrenkiella parvula HOM05D002381 ORTHO05D002480 4.6e-08 62.4 101 35.6
TAR628G0618 Trochodendron aralioides HOM05D002381 ORTHO05D002480 4.6e-08 62.4 86 38.4
BcaC01g04699 Brassica carinata HOM05D002381 ORTHO05D002480 6.0e-08 62.0 101 36.6
BcaC04g20989 Brassica carinata HOM05D002381 ORTHO05D002480 6.0e-08 62.0 104 35.6
A03p28770 Brassica napus HOM05D002381 ORTHO05D002480 6.0e-08 62.0 101 36.6
C03p34790 Brassica napus HOM05D002381 ORTHO05D002480 6.0e-08 62.0 101 36.6
C09p36900 Brassica napus HOM05D002381 ORTHO05D002480 6.0e-08 62.0 104 35.6
BolC3t15788H Brassica oleracea HOM05D002381 ORTHO05D002480 6.0e-08 62.0 101 36.6
BolC9t56520H Brassica oleracea HOM05D002381 ORTHO05D002480 6.0e-08 62.0 104 35.6
BraA03t12075Z Brassica rapa HOM05D002381 ORTHO05D002480 6.0e-08 62.0 101 36.6
BraA09t38471Z Brassica rapa HOM05D002381 ORTHO05D002480 6.0e-08 62.0 104 35.6
CSS0050185 Camellia sinensis var. sinensis HOM05D002381 ORTHO05D002480 6.0e-08 62.0 116 37.1
Carub.0006s2830 Capsella rubella HOM05D002381 ORTHO05D002480 6.0e-08 62.0 108 34.3
MD05G1033000 Malus domestica HOM05D002381 ORTHO05D002480 6.0e-08 62.0 110 37.3
A09p29050 Brassica napus HOM05D002381 ORTHO05D002480 7.8e-08 61.6 104 35.6
CANSAT01G0730 Cannabis sativa HOM05D002381 ORTHO05D002480 7.8e-08 61.6 113 33.6
CiPaw.03G132000 Carya illinoinensis HOM05D002381 ORTHO05D002480 7.8e-08 61.6 115 33.9
Thhalv10028989m.g Eutrema salsugineum HOM05D002381 ORTHO05D002480 7.8e-08 61.6 101 36.6
MBI04_g08943_MAGBIO Magnolia biondii HOM05D002381 ORTHO05D002480 7.8e-08 61.6 110 35.5
TPR.G2164 Trifolium pratense HOM05D002381 ORTHO05D002480 7.8e-08 61.6 106 33.0
Aqoxy2G00531 Aquilegia oxysepala HOM05D002381 ORTHO05D002480 1.0e-07 61.2 72 44.4
Cfa002781 Carpinus fangiana HOM05D002381 ORTHO05D002480 1.0e-07 61.2 115 33.9
Eucgr.I00298 Eucalyptus grandis HOM05D002381 ORTHO05D002480 1.0e-07 61.2 102 37.3
Duzib264G0937 Durio zibethinus HOM05D002381 ORTHO05D002480 1.3e-07 60.8 115 36.5
AT4G09830 Arabidopsis thaliana HOM05D002381 ORTHO05D002480 1.7e-07 60.5 101 35.6
Ciclev10002494m.g Citrus clementina HOM05D002381 ORTHO05D002480 1.7e-07 60.5 114 35.1
Thhalv10005018m.g Eutrema salsugineum HOM05D002381 ORTHO05D002480 1.7e-07 60.5 140 35.0
Glyma.05G185900 Glycine max HOM05D002381 ORTHO05D002480 1.7e-07 60.5 110 34.5
Gohir.A05G246200 Gossypium hirsutum HOM05D002381 ORTHO05D002480 1.7e-07 60.5 114 35.1
PGR004G1052 Punica granatum HOM05D002381 ORTHO05D002480 1.7e-07 60.5 97 36.1
RcHm_v2.0_Chr6g0274261 Rosa chinensis HOM05D002381 ORTHO05D002480 1.7e-07 60.5 195 28.7
Os01g0589500 Oryza sativa ssp. japonica HOM05D002381 ORTHO05D002480 2.3e-07 60.1 88 35.2
QL06p031450 Quercus lobata HOM05D002381 ORTHO05D002480 2.3e-07 60.1 108 35.2
Hund17481 Selenicereus undatus HOM05D002381 ORTHO05D002480 2.3e-07 60.1 110 33.6
Atru.chr13.2011 Acer truncatum HOM05D002381 ORTHO05D002480 3.0e-07 59.7 114 36.0
arahy.Tifrunner.gnm1.ann1.XSKM5Y Arachis hypogaea HOM05D002381 ORTHO05D002480 3.0e-07 59.7 112 37.5
Dinv19458 Davidia involucrata HOM05D002381 ORTHO05D002480 3.0e-07 59.7 115 34.8
Duzib093G1096 Durio zibethinus HOM05D002381 ORTHO05D002480 3.0e-07 59.7 114 36.0
FvH4_5g34113 Fragaria vesca HOM05D002381 ORTHO05D002480 3.0e-07 59.7 123 35.0
Glyma.10G221800 Glycine max HOM05D002381 ORTHO05D002480 3.0e-07 59.7 115 33.9
Lalb_Chr06g0161701 Lupinus albus HOM05D002381 ORTHO05D002480 3.0e-07 59.7 101 35.6
PSO541G4513 Papaver somniferum HOM05D002381 ORTHO05D002480 3.0e-07 59.7 102 35.3
Prupe.8G040300 Prunus persica HOM05D002381 ORTHO05D002480 3.0e-07 59.7 110 36.4
PGR044G2698 Punica granatum HOM05D002381 ORTHO05D002480 3.0e-07 59.7 110 33.6
Manes.18G094600 Manihot esculenta HOM05D002381 ORTHO05D002480 3.9e-07 59.3 112 34.8
Thecc.01G116400 Theobroma cacao HOM05D002381 ORTHO05D002480 3.9e-07 59.3 89 37.1
TAR369G0654 Trochodendron aralioides HOM05D002381 ORTHO05D002480 3.9e-07 59.3 126 35.7
CSS0028410 Camellia sinensis var. sinensis HOM05D002381 ORTHO05D002480 5.1e-07 58.9 113 34.5
CiPaw.15G012700 Carya illinoinensis HOM05D002381 ORTHO05D002480 5.1e-07 58.9 115 33.0
Nn5g28817 Nelumbo nucifera HOM05D002381 ORTHO05D002480 5.1e-07 58.9 136 31.6
Nitab4.5_0003411g0020 Nicotiana tabacum HOM05D002381 ORTHO05D002480 5.1e-07 58.9 110 34.5
Solyc12g056630.3 Solanum lycopersicum HOM05D002381 ORTHO05D002480 5.1e-07 58.9 108 33.3
THA.LOC104806765 Tarenaya hassleriana HOM05D002381 ORTHO05D002480 5.1e-07 58.9 106 35.8
TWI79G1424 Tripterygium wilfordii HOM05D002381 ORTHO05D002480 5.1e-07 58.9 113 35.4
MELO3C024074.2 Cucumis melo HOM05D002381 ORTHO05D002480 6.6e-07 58.5 111 33.3
Glyma.16G163600 Glycine max HOM05D002381 ORTHO05D002480 6.6e-07 58.5 107 37.4
Gohir.D05G247700 Gossypium hirsutum HOM05D002381 ORTHO05D002480 6.6e-07 58.5 114 34.2
Lj7A382G70 Lonicera japonica HOM05D002381 ORTHO05D002480 6.6e-07 58.5 106 34.9
MD10G1034000 Malus domestica HOM05D002381 ORTHO05D002480 6.6e-07 58.5 107 35.5
Nitab4.5_0000872g0030 Nicotiana tabacum HOM05D002381 ORTHO05D002480 6.6e-07 58.5 89 36.0
THA.LOC104815997 Tarenaya hassleriana HOM05D002381 ORTHO05D002480 6.6e-07 58.5 84 38.1
Thecc.08G158900 Theobroma cacao HOM05D002381 ORTHO05D002480 6.6e-07 58.5 110 36.4
HPP92_006453 Vanilla planifolia HOM05D002381 ORTHO05D002480 6.6e-07 58.5 105 34.3
HPP92_006454 Vanilla planifolia HOM05D002381 ORTHO05D002480 6.6e-07 58.5 105 34.3
AL6G43470 Arabidopsis lyrata HOM05D002381 ORTHO05D002480 8.7e-07 58.2 84 36.9
A06p31570 Brassica napus HOM05D002381 ORTHO05D002480 8.7e-07 58.2 99 34.3
BraA06t26094Z Brassica rapa HOM05D002381 ORTHO05D002480 8.7e-07 58.2 99 34.3
COL.COLO4_03467 Corchorus olitorius HOM05D002381 ORTHO05D002480 8.7e-07 58.2 108 34.3
CsaV3_7G024530 Cucumis sativus L. HOM05D002381 ORTHO05D002480 8.7e-07 58.2 115 34.8
Dinv41041 Davidia involucrata HOM05D002381 ORTHO05D002480 8.7e-07 58.2 110 33.6
FvH4_2g13040 Fragaria vesca HOM05D002381 ORTHO05D002480 8.7e-07 58.2 212 27.4
Lj5g0024581 Lotus japonicus HOM05D002381 ORTHO05D002480 8.7e-07 58.2 130 34.6
Manes.02G183100 Manihot esculenta HOM05D002381 ORTHO05D002480 8.7e-07 58.2 110 35.5
PSO170G0441 Papaver somniferum HOM05D002381 ORTHO05D002480 8.7e-07 58.2 89 36.0
HPP92_000680 Vanilla planifolia HOM05D002381 ORTHO05D002480 8.7e-07 58.2 106 32.1
CAN.G26.49 Capsicum annuum HOM05D002381 ORTHO05D002480 1.1e-06 57.8 110 33.6
Cc10_g15200 Coffea canephora HOM05D002381 ORTHO05D002480 1.1e-06 57.8 209 27.8
Lalb_Chr13g0296291 Lupinus albus HOM05D002381 ORTHO05D002480 1.1e-06 57.8 130 33.1
Oeu001978.1 Olea europaea HOM05D002381 ORTHO05D002480 1.1e-06 57.8 137 30.7
PSO675G3565 Papaver somniferum HOM05D002381 ORTHO05D002480 1.1e-06 57.8 108 33.3
Phvul.007G083200 Phaseolus vulgaris HOM05D002381 ORTHO05D002480 1.1e-06 57.8 110 35.5
Rhsim11G0087400 Rhododendron simsii HOM05D002381 ORTHO05D002480 1.1e-06 57.8 207 27.5
AagrBONN_evm.TU.Sc2ySwM_228.503 Anthoceros agrestis HOM05D002381 ORTHO05D002480 1.5e-06 57.4 106 32.1
MSTRG.18028 Avicennia marina HOM05D002381 ORTHO05D002480 1.5e-06 57.4 84 32.1
BcaB02g09822 Brassica carinata HOM05D002381 ORTHO05D002480 1.5e-06 57.4 140 32.9
Sabra02G0051700 Salix brachista HOM05D002381 ORTHO05D002480 1.5e-06 57.4 110 34.5
DCAR_001162 Daucus carota HOM05D002381 ORTHO05D002480 1.9e-06 57.0 107 33.6
Peaxi162Scf00160g01745 Petunia axillaris HOM05D002381 ORTHO05D002480 1.9e-06 57.0 112 33.9
Peaxi162Scf00360g00032 Petunia axillaris HOM05D002381 ORTHO05D002480 1.9e-06 57.0 101 31.7
RcHm_v2.0_Chr7g0233661 Rosa chinensis HOM05D002381 ORTHO05D002480 1.9e-06 57.0 123 33.3
arahy.Tifrunner.gnm1.ann1.68WXI5 Arachis hypogaea HOM05D002381 ORTHO05D002480 2.5e-06 56.6 123 32.5
Nitab4.5_0000099g0210 Nicotiana tabacum HOM05D002381 ORTHO05D002480 2.5e-06 56.6 109 35.8
PSO700G0246 Papaver somniferum HOM05D002381 ORTHO05D002480 2.5e-06 56.6 89 34.8
Potri.001G003400 Populus trichocarpa HOM05D002381 ORTHO05D002480 2.5e-06 56.6 109 33.0
SHI11502 Sapria himalayana HOM05D002381 ORTHO05D002480 2.5e-06 56.6 84 34.5
TWI75G0578 Tripterygium wilfordii HOM05D002381 ORTHO05D002480 2.5e-06 56.6 113 34.5
Carub.0008s2559 Capsella rubella HOM05D002381 ORTHO05D002480 3.3e-06 56.2 112 33.9
CARHR278770 Cardamine hirsuta HOM05D002381 ORTHO05D002480 3.3e-06 56.2 111 34.2
CiPaw.16G008600 Carya illinoinensis HOM05D002381 ORTHO05D002480 3.3e-06 56.2 210 29.0
FAN27G2080 Fragaria x ananassa HOM05D002381 ORTHO05D002480 3.3e-06 56.2 191 27.7
Lsat_1_v5_gn_6_101620 Lactuca sativa HOM05D002381 ORTHO05D002480 3.3e-06 56.2 104 33.7
Oeu028357.1 Olea europaea HOM05D002381 ORTHO05D002480 3.3e-06 56.2 111 32.4
AL8G42240 Arabidopsis lyrata HOM05D002381 ORTHO05D002480 4.3e-06 55.8 111 34.2
CDE04G2436 Ceratophyllum demersum HOM05D002381 ORTHO05D002480 4.3e-06 55.8 89 39.3
CDE06G1694 Ceratophyllum demersum HOM05D002381 ORTHO05D002480 4.3e-06 55.8 110 36.4
AUR62034896 Chenopodium quinoa HOM05D002381 ORTHO05D002480 4.3e-06 55.8 111 34.2
FAN20G2457 Fragaria x ananassa HOM05D002381 ORTHO05D002480 4.3e-06 55.8 191 27.7
FAN24G1735 Fragaria x ananassa HOM05D002381 ORTHO05D002480 4.3e-06 55.8 191 27.7
Sopen12g029290 Solanum pennellii HOM05D002381 ORTHO05D002480 4.3e-06 55.8 110 32.7
Actinidia04749 Actinidia chinensis HOM05D002381 ORTHO05D002480 5.6e-06 55.5 208 27.9
Actinidia26826 Actinidia chinensis HOM05D002381 ORTHO05D002480 5.6e-06 55.5 208 27.9
AT5G64780 Arabidopsis thaliana HOM05D002381 ORTHO05D002480 5.6e-06 55.5 109 33.0
BcaC01g02711 Brassica carinata HOM05D002381 ORTHO05D002480 5.6e-06 55.5 140 30.7
C03p61390 Brassica napus HOM05D002381 ORTHO05D002480 5.6e-06 55.5 140 30.7
BolC3t18399H Brassica oleracea HOM05D002381 ORTHO05D002480 5.6e-06 55.5 140 30.7
AUR62026638 Chenopodium quinoa HOM05D002381 ORTHO05D002480 5.6e-06 55.5 89 34.8
Duzib041G0158 Durio zibethinus HOM05D002381 ORTHO05D002480 5.6e-06 55.5 114 35.1
Duzib116G0127 Durio zibethinus HOM05D002381 ORTHO05D002480 5.6e-06 55.5 114 34.2
Glyma.02G079200 Glycine max HOM05D002381 ORTHO05D002480 5.6e-06 55.5 113 34.5
Os09g0360400 Oryza sativa ssp. japonica HOM05D002381 ORTHO05D002480 5.6e-06 55.5 127 32.3
TWI34G0925 Tripterygium wilfordii HOM05D002381 ORTHO05D002480 5.6e-06 55.5 163 28.8
TAR625G1021 Trochodendron aralioides HOM05D002381 ORTHO05D002480 5.6e-06 55.5 107 34.6
Ca_17676_v3 Cicer arietinum L. HOM05D002381 ORTHO05D002480 7.3e-06 55.1 123 31.7
Ca_29602_v3 Cicer arietinum L. HOM05D002381 ORTHO05D002480 7.3e-06 55.1 123 31.7
Medtr8g092210 Medicago truncatula HOM05D002381 ORTHO05D002480 7.3e-06 55.1 123 31.7
Nn1g06003 Nelumbo nucifera HOM05D002381 ORTHO05D002480 7.3e-06 55.1 96 32.3
Sp2g27850 Schrenkiella parvula HOM05D002381 ORTHO05D002480 7.3e-06 55.1 140 32.1
GSVIVG01025474001 Vitis vinifera HOM05D002381 ORTHO05D002480 7.3e-06 55.1 85 37.6
Medtr1g098250 Medicago truncatula HOM05D002381 ORTHO05D002480 9.6e-06 54.7 110 34.5
Os08g0397900 Oryza sativa ssp. japonica HOM05D002381 ORTHO05D002480 9.6e-06 54.7 146 26.7
Psat7g049840 Pisum sativum HOM05D002381 ORTHO05D002480 9.6e-06 54.7 114 32.5


User provided reference genes

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