Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 1.8e-151 539.3 274 100.0
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 8.2e-125 450.7 271 80.4
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 3.1e-124 448.7 271 80.4
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 1.0e-122 443.7 271 79.7
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 4.8e-117 424.9 271 72.3
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 9.1e-116 420.6 271 70.5
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 2.0e-115 419.5 271 72.7
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 2.0e-115 419.5 271 73.1
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 2.6e-115 419.1 271 71.6
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 7.7e-115 417.5 271 71.6
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 7.7e-115 417.5 271 72.3
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 1.3e-114 416.8 271 72.3
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 1.7e-114 416.4 271 73.4
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 2.2e-114 416.0 274 73.4
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 2.2e-114 416.0 271 72.7
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 2.9e-114 415.6 270 72.2
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 3.8e-114 415.2 271 72.3
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 6.5e-114 414.5 271 69.4
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 6.5e-114 414.5 271 72.0
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 6.5e-114 414.5 271 71.6
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 6.5e-114 414.5 271 70.5
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 8.5e-114 414.1 271 72.0
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 8.5e-114 414.1 271 72.3
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 8.5e-114 414.1 271 71.6
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 1.1e-113 413.7 271 72.0
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.5e-113 413.3 271 72.0
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 1.9e-113 412.9 272 73.2
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 1.9e-113 412.9 271 71.2
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 1.9e-113 412.9 271 71.2
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 2.5e-113 412.5 271 70.1
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 3.2e-113 412.1 271 72.0
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 3.2e-113 412.1 270 70.7
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 3.2e-113 412.1 271 69.7
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 4.2e-113 411.8 270 71.1
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 4.2e-113 411.8 271 71.6
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 5.5e-113 411.4 272 72.8
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 7.2e-113 411.0 271 70.8
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 7.2e-113 411.0 271 69.7
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 7.2e-113 411.0 270 71.1
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 9.4e-113 410.6 271 70.8
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.2e-112 410.2 271 71.6
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 1.2e-112 410.2 271 70.1
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 1.6e-112 409.8 274 71.5
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 1.6e-112 409.8 274 71.5
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 1.6e-112 409.8 271 70.8
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 1.6e-112 409.8 271 70.1
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 1.6e-112 409.8 271 70.1
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 2.1e-112 409.5 272 72.1
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 2.1e-112 409.5 270 70.0
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 2.1e-112 409.5 271 70.5
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 2.7e-112 409.1 274 71.5
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 2.7e-112 409.1 271 74.9
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 3.6e-112 408.7 272 72.1
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 3.6e-112 408.7 271 70.1
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 3.6e-112 408.7 271 69.0
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 3.6e-112 408.7 270 71.1
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 3.6e-112 408.7 270 71.1
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 3.6e-112 408.7 270 70.7
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 4.7e-112 408.3 271 70.5
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 4.7e-112 408.3 269 72.9
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 4.7e-112 408.3 269 70.3
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 6.1e-112 407.9 274 71.5
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 8.0e-112 407.5 271 69.7
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 8.0e-112 407.5 274 71.2
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 8.0e-112 407.5 271 69.0
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 8.0e-112 407.5 270 70.4
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 1.0e-111 407.1 270 70.4
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 1.0e-111 407.1 271 70.8
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 2.3e-111 406.0 271 69.7
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 4.0e-111 405.2 271 69.0
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 5.2e-111 404.8 272 71.7
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 6.7e-111 404.4 270 70.4
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 8.8e-111 404.1 272 71.0
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 8.8e-111 404.1 271 70.5
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 8.8e-111 404.1 274 70.1
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 2.0e-110 402.9 271 70.5
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 5.7e-110 401.4 270 70.4
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 7.5e-110 401.0 270 69.6
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 7.5e-110 401.0 260 71.9
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 2.8e-109 399.1 271 70.1
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 2.8e-109 399.1 273 67.4
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 3.7e-109 398.7 270 70.4
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 4.8e-109 398.3 270 68.9
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 4.8e-109 398.3 270 68.9
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 1.1e-108 397.1 271 67.9
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 4.1e-108 395.2 272 67.6
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 2.0e-107 392.9 270 67.0
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 2.7e-107 392.5 304 63.5
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 3.5e-107 392.1 271 67.5
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 1.3e-106 390.2 270 67.0
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 1.7e-106 389.8 301 62.1
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 6.5e-106 387.9 257 69.6
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 6.5e-106 387.9 271 67.5
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 8.5e-106 387.5 271 70.1
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 1.9e-105 386.3 302 63.2
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 4.0e-103 378.6 270 67.0
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 4.0e-103 378.6 271 67.2
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 1.5e-102 376.7 261 65.5
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 2.8e-101 372.5 271 64.9
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 6.3e-101 371.3 271 65.3
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 7.0e-100 367.9 270 65.2
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 1.7e-98 363.2 283 62.5
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 5.5e-97 358.2 241 68.5
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 4.7e-96 355.1 271 64.2
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 8.0e-96 354.4 381 49.6
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 1.7e-93 346.7 241 68.0
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 8.3e-93 344.4 288 62.8
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 1.1e-92 344.0 267 62.9
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 2.0e-91 339.7 245 65.7
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 5.9e-91 338.2 221 71.5
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 9.5e-89 330.9 271 62.0
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 1.4e-87 327.0 220 67.7
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 6.8e-87 324.7 252 62.7
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 2.3e-79 299.7 196 69.9
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 2.6e-78 296.2 221 64.3
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 1.3e-77 293.9 276 52.5
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 4.9e-77 292.0 272 55.1
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 1.6e-75 287.0 271 55.4
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 6.0e-75 285.0 271 55.0
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 5.6e-73 278.5 181 72.4
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 2.9e-69 266.2 272 51.5
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 1.1e-68 264.2 168 73.2
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 5.6e-65 251.9 240 54.2
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 1.2e-62 244.2 272 48.5
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 5.4e-60 235.3 152 69.1
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 3.0e-58 229.6 152 71.1
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 6.6e-58 228.4 165 64.8
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 7.3e-49 198.4 206 50.5
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 7.6e-46 188.3 272 41.9
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 1.5e-41 174.1 154 57.8
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 6.2e-40 168.7 271 39.5
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 1.2e-38 164.5 171 50.3
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.4e-36 157.5 270 37.0
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 1.5e-30 137.5 159 49.1
SEGI_30125 Sequoiadendron giganteum HOM05D005146 ORTHO05D006752 2.2e-29 133.7 98 66.3
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 1.4e-28 131.0 90 64.4
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 4.2e-28 129.4 185 39.5
Oeu039054.1 Olea europaea HOM05D000784 ORTHO05D000116 7.9e-27 125.2 79 68.4
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 3.7e-24 116.3 261 37.2
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 4.1e-23 112.8 269 34.6
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 2.1e-19 100.5 134 40.3
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 1.4e-18 97.8 98 54.1
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 1.8e-18 97.4 134 39.6
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 1.8e-15 87.4 73 56.2
BcaNung04119 Brassica carinata HOM05D001941 ORTHO05D002198 1.0e-10 71.6 45 75.6
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 5.1e-10 69.3 57 56.1
Actinidia16979 Actinidia chinensis HOM05D005146 ORTHO05D006752 2.4e-07 60.5 87 37.9
MELO3C033356.2 Cucumis melo HOM05D005146 ORTHO05D166957 2.4e-07 60.5 49 57.1


User provided reference genes

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