Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0106s0015 Marchantia polymorpha HOM05D004915 ORTHO05D006048 1.1e-150 536.6 261 100.0
Pp3c2_33530 Physcomitrium patens HOM05D004915 ORTHO05D006048 2.1e-90 336.3 247 64.8
SEGI_18610 Sequoiadendron giganteum HOM05D004915 ORTHO05D006048 6.9e-81 304.7 213 66.7
Carub.0007s3626 Capsella rubella HOM05D004915 ORTHO05D006048 9.0e-81 304.3 260 54.6
AUR62021031 Chenopodium quinoa HOM05D004915 ORTHO05D006048 1.5e-80 303.5 253 56.9
CARHR262560 Cardamine hirsuta HOM05D004915 ORTHO05D006048 2.6e-80 302.8 255 53.7
A06p40200 Brassica napus HOM05D004915 ORTHO05D006048 1.0e-79 300.8 246 56.9
BcaC06g33662 Brassica carinata HOM05D004915 ORTHO05D006048 2.2e-79 299.7 250 55.6
C07p37910 Brassica napus HOM05D004915 ORTHO05D006048 2.2e-79 299.7 250 55.6
Thhalv10027886m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 2.9e-79 299.3 242 57.4
BolC4t26193H Brassica oleracea HOM05D004915 ORTHO05D006048 1.4e-78 297.0 246 56.1
Aa31LG9G16420 Aethionema arabicum HOM05D004915 ORTHO05D006048 1.9e-78 296.6 252 54.4
BolC7t44312H Brassica oleracea HOM05D004915 ORTHO05D006048 1.9e-78 296.6 250 55.2
BraA06t26934Z Brassica rapa HOM05D004915 ORTHO05D006048 2.5e-78 296.2 246 56.1
Atru.chr8.192 Acer truncatum HOM05D004915 ORTHO05D006048 3.2e-78 295.8 242 57.4
SGA_v2.0_scaffold17G08101 Striga asiatica HOM05D004915 ORTHO05D006048 3.2e-78 295.8 221 60.6
Aa31LG2G4180 Aethionema arabicum HOM05D004915 ORTHO05D006048 4.2e-78 295.4 246 54.1
BraA04t16903Z Brassica rapa HOM05D004915 ORTHO05D006048 4.2e-78 295.4 246 56.1
Thhalv10005292m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 5.5e-78 295.0 246 54.5
FAN10G0297 Fragaria x ananassa HOM05D004915 ORTHO05D006048 5.5e-78 295.0 248 57.7
C04p46080 Brassica napus HOM05D004915 ORTHO05D006048 7.2e-78 294.7 246 55.3
CARHR152100 Cardamine hirsuta HOM05D004915 ORTHO05D006048 9.4e-78 294.3 253 53.8
FAN03G1016 Fragaria x ananassa HOM05D004915 ORTHO05D006048 9.4e-78 294.3 248 58.1
RcHm_v2.0_Chr7g0181591 Rosa chinensis HOM05D004915 ORTHO05D006048 9.4e-78 294.3 248 58.5
Sp7g02320 Schrenkiella parvula HOM05D004915 ORTHO05D006048 1.2e-77 293.9 246 54.9
TWI34G1631 Tripterygium wilfordii HOM05D004915 ORTHO05D006048 1.2e-77 293.9 246 56.1
FvH4_7g07490 Fragaria vesca HOM05D004915 ORTHO05D006048 1.6e-77 293.5 248 57.7
MSTRG.15680 Avicennia marina HOM05D004915 ORTHO05D006048 2.7e-77 292.7 213 62.0
Carub.0005s0760 Capsella rubella HOM05D004915 ORTHO05D006048 2.7e-77 292.7 251 53.8
A04p12400 Brassica napus HOM05D004915 ORTHO05D006048 3.6e-77 292.4 246 55.7
MD06G1194800 Malus domestica HOM05D004915 ORTHO05D006048 4.6e-77 292.0 240 56.7
AL5G18870 Arabidopsis lyrata HOM05D004915 ORTHO05D006048 7.9e-77 291.2 246 54.5
Potri.017G085100 Populus trichocarpa HOM05D004915 ORTHO05D006048 1.0e-76 290.8 254 54.3
Actinidia38781 Actinidia chinensis HOM05D004915 ORTHO05D006048 2.3e-76 289.7 248 53.6
AagrBONN_evm.TU.Sc2ySwM_344.3958 Anthoceros agrestis HOM05D004915 ORTHO05D006048 3.9e-76 288.9 224 61.2
Sp2g17640 Schrenkiella parvula HOM05D004915 ORTHO05D006048 3.9e-76 288.9 246 53.7
Sabra17G0075000 Salix brachista HOM05D004915 ORTHO05D006048 5.1e-76 288.5 254 54.3
AUR62018412 Chenopodium quinoa HOM05D004915 ORTHO05D006048 6.7e-76 288.1 245 55.9
Cpa.g.sc179.53 Carica papaya HOM05D004915 ORTHO05D006048 8.8e-76 287.7 242 56.2
SMO119G0486 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 2.5e-75 286.2 225 58.2
Migut.L00264 Erythranthe guttata HOM05D004915 ORTHO05D006048 5.7e-75 285.0 227 56.8
FAN04G1144 Fragaria x ananassa HOM05D004915 ORTHO05D006048 5.7e-75 285.0 248 56.0
Ca_02901_v3 Cicer arietinum L. HOM05D004915 ORTHO05D006048 7.4e-75 284.6 254 54.3
Manes.01G092400 Manihot esculenta HOM05D004915 ORTHO05D006048 7.4e-75 284.6 242 55.0
Prupe.5G195000 Prunus persica HOM05D004915 ORTHO05D006048 7.4e-75 284.6 247 55.5
CiPaw.11G045800 Carya illinoinensis HOM05D004915 ORTHO05D006048 9.7e-75 284.3 245 55.5
Dinv37673 Davidia involucrata HOM05D004915 ORTHO05D006048 9.7e-75 284.3 242 54.1
FAN08G1694 Fragaria x ananassa HOM05D004915 ORTHO05D006048 9.7e-75 284.3 248 55.6
Peaxi162Scf00241g00416 Petunia axillaris HOM05D004915 ORTHO05D006048 9.7e-75 284.3 250 55.6
Actinidia38763 Actinidia chinensis HOM05D004915 ORTHO05D006048 1.3e-74 283.9 258 51.9
Eucgr.B00520 Eucalyptus grandis HOM05D004915 ORTHO05D006048 1.3e-74 283.9 226 58.0
Oeu058311.1 Olea europaea HOM05D004915 ORTHO05D006048 1.7e-74 283.5 228 56.6
COL.COLO4_22946 Corchorus olitorius HOM05D004915 ORTHO05D006048 2.8e-74 282.7 218 59.6
Solyc06g065310.3 Solanum lycopersicum HOM05D004915 ORTHO05D006048 3.7e-74 282.3 246 55.3
PSO478G3309 Papaver somniferum HOM05D004915 ORTHO05D006048 4.8e-74 282.0 246 53.3
TAR622G0868 Trochodendron aralioides HOM05D004915 ORTHO05D006048 6.3e-74 281.6 244 54.1
FAN18G3490 Fragaria x ananassa HOM05D004915 ORTHO05D006048 8.2e-74 281.2 248 55.2
Lj1g0024391 Lotus japonicus HOM05D004915 ORTHO05D006048 8.2e-74 281.2 252 52.0
MD14G1201800 Malus domestica HOM05D004915 ORTHO05D006048 8.2e-74 281.2 240 54.6
QL10p017218 Quercus lobata HOM05D004915 ORTHO05D006048 8.2e-74 281.2 250 54.0
Ciclev10012474m.g Citrus clementina HOM05D004915 ORTHO05D006048 1.4e-73 280.4 246 54.5
Glyma.09G236600 Glycine max HOM05D004915 ORTHO05D006048 1.4e-73 280.4 211 58.8
FAN13G2234 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.8e-73 280.0 249 55.8
Nitab4.5_0000121g0120 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.8e-73 280.0 211 60.7
Phvul.008G037200 Phaseolus vulgaris HOM05D004915 ORTHO05D006048 1.8e-73 280.0 250 52.4
Hund02640 Selenicereus undatus HOM05D004915 ORTHO05D006048 1.8e-73 280.0 252 54.8
Sopen06g023800 Solanum pennellii HOM05D004915 ORTHO05D006048 1.8e-73 280.0 247 55.1
Oeu037787.1 Olea europaea HOM05D004915 ORTHO05D006048 2.4e-73 279.6 238 55.0
ECA246G2050 Erigeron canadensis HOM05D004915 ORTHO05D006048 4.1e-73 278.9 245 53.5
MBI05_g33757_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 4.1e-73 278.9 244 54.1
Thecc.03G090400 Theobroma cacao HOM05D004915 ORTHO05D006048 4.1e-73 278.9 250 53.2
Cfa018930 Carpinus fangiana HOM05D004915 ORTHO05D006048 5.3e-73 278.5 245 54.7
TPR.G33578 Trifolium pratense HOM05D004915 ORTHO05D006048 5.3e-73 278.5 250 51.6
Duzib205G1074 Durio zibethinus HOM05D004915 ORTHO05D006048 6.9e-73 278.1 250 52.0
FvH4_5g14790 Fragaria vesca HOM05D004915 ORTHO05D006048 6.9e-73 278.1 248 54.8
Os08g0435800 Oryza sativa ssp. japonica HOM05D004915 ORTHO05D006048 6.9e-73 278.1 249 51.8
VMungo1383G0755 Vigna mungo HOM05D004915 ORTHO05D006048 6.9e-73 278.1 250 52.0
Aqoxy3G03429 Aquilegia oxysepala HOM05D004915 ORTHO05D006048 9.1e-73 277.7 252 51.2
CsaV3_1G005570 Cucumis sativus L. HOM05D004915 ORTHO05D006048 9.1e-73 277.7 247 53.0
GSVIVG01007990001 Vitis vinifera HOM05D004915 ORTHO05D006048 9.1e-73 277.7 250 54.0
Cc04_g16470 Coffea canephora HOM05D004915 ORTHO05D006048 1.2e-72 277.3 221 57.9
MELO3C001989.2 Cucumis melo HOM05D004915 ORTHO05D006048 1.2e-72 277.3 247 53.4
HPP92_002574 Vanilla planifolia HOM05D004915 ORTHO05D006048 1.2e-72 277.3 257 51.4
HPP92_002576 Vanilla planifolia HOM05D004915 ORTHO05D006048 1.2e-72 277.3 257 51.4
TPR.G39201 Trifolium pratense HOM05D004915 ORTHO05D006048 1.5e-72 276.9 250 52.0
TAR374G0666 Trochodendron aralioides HOM05D004915 ORTHO05D006048 1.5e-72 276.9 220 59.1
EL10Ac3g07299 Beta vulgaris HOM05D004915 ORTHO05D006048 2.0e-72 276.6 301 47.5
Psat3g200280 Pisum sativum HOM05D004915 ORTHO05D006048 2.6e-72 276.2 253 50.6
CSS0019190 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 3.4e-72 275.8 242 53.7
CAN.G199.5 Capsicum annuum HOM05D004915 ORTHO05D006048 3.4e-72 275.8 241 55.2
Lsat_1_v5_gn_9_27040 Lactuca sativa HOM05D004915 ORTHO05D006048 5.9e-72 275.0 212 59.0
HanXRQChr08g0236601 Helianthus annuus HOM05D004915 ORTHO05D006048 7.7e-72 274.6 236 54.2
PGSC0003DMG400026111 Solanum tuberosum HOM05D004915 ORTHO05D006048 7.7e-72 274.6 242 55.0
Zm00001eb211140 Zea mays HOM05D004915 ORTHO05D006048 1.0e-71 274.2 244 50.8
Rhsim08G0070400 Rhododendron simsii HOM05D004915 ORTHO05D006048 1.7e-71 273.5 248 52.0
ClCG04G012190 Citrullus lanatus HOM05D004915 ORTHO05D006048 2.2e-71 273.1 248 52.4
HanXRQChr09g0247201 Helianthus annuus HOM05D004915 ORTHO05D006048 2.2e-71 273.1 236 53.4
Medtr1g111380 Medicago truncatula HOM05D004915 ORTHO05D006048 2.9e-71 272.7 243 53.5
Medtr7g011040 Medicago truncatula HOM05D004915 ORTHO05D006048 3.8e-71 272.3 208 58.7
Hma1.2p1_0060F.1_g033670 Hydrangea macrophylla HOM05D004915 ORTHO05D006048 5.0e-71 271.9 221 58.8
Lj5C110T19 Lonicera japonica HOM05D004915 ORTHO05D006048 2.5e-70 269.6 246 53.3
MBI05_g35466_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 3.2e-70 269.2 258 51.2
Nn4g23203 Nelumbo nucifera HOM05D004915 ORTHO05D006048 3.2e-70 269.2 239 54.8
CANSAT56G1541 Cannabis sativa HOM05D004915 ORTHO05D006048 1.2e-69 267.3 211 57.8
Peaxi162Scf00106g00016 Petunia axillaris HOM05D004915 ORTHO05D006048 1.6e-69 266.9 274 49.6
Lj4A111T68 Lonicera japonica HOM05D004915 ORTHO05D006048 1.8e-68 263.5 260 49.2
Lalb_Chr23g0265041 Lupinus albus HOM05D004915 ORTHO05D006048 2.3e-68 263.1 204 59.3
arahy.Tifrunner.gnm1.ann1.BYQL86 Arachis hypogaea HOM05D004915 ORTHO05D006048 5.1e-68 261.9 242 50.4
Haze_07314 Corylus avellana HOM05D004915 ORTHO05D006048 1.5e-67 260.4 280 47.5
AT3G29010 Arabidopsis thaliana HOM05D004915 ORTHO05D006048 2.2e-66 256.5 177 66.1
AagrBONN_evm.TU.Sc2ySwM_362.689 Anthoceros agrestis HOM05D004915 ORTHO05D006048 3.7e-66 255.8 185 64.9
THA.LOC104825807 Tarenaya hassleriana HOM05D004915 ORTHO05D006048 1.4e-65 253.8 270 48.5
PGR083G1377 Punica granatum HOM05D004915 ORTHO05D006048 1.8e-65 253.4 213 55.4
DCAR_015957 Daucus carota HOM05D004915 ORTHO05D006048 5.9e-64 248.4 244 51.6
Sc04g0002730 Simmondsia chinensis HOM05D004915 ORTHO05D006048 5.9e-64 248.4 168 67.9
CSS0012692 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 3.2e-62 242.7 242 50.0
BcaB06g27359 Brassica carinata HOM05D004915 ORTHO05D006048 4.2e-62 242.3 248 49.2
Sed0011950 Sechium edule HOM05D004915 ORTHO05D006048 3.6e-61 239.2 204 55.9
AagrBONN_evm.TU.Sc2ySwM_362.690 Anthoceros agrestis HOM05D004915 ORTHO05D006048 1.0e-60 237.7 169 65.7
MCO14G534 Micromonas commoda HOM05D004915 ORTHO05D006048 2.8e-58 229.6 245 48.2
Gorai.001G074400 Gossypium raimondii HOM05D004915 ORTHO05D006048 1.7e-55 220.3 201 52.7
Gohir.D07G070500 Gossypium hirsutum HOM05D004915 ORTHO05D006048 5.0e-55 218.8 201 52.2
Cre01.g053750 Chlamydomonas reinhardtii HOM05D004915 ORTHO05D006048 2.5e-54 216.5 246 46.3
PGR031G1409 Punica granatum HOM05D004915 ORTHO05D006048 4.2e-54 215.7 202 52.0
Actinidia26226 Actinidia chinensis HOM05D004915 ORTHO05D006048 3.1e-49 199.5 244 43.0
SMO164G0178 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 9.1e-49 198.0 238 42.0
ATR0626G227 Amborella trichopoda HOM05D004915 ORTHO05D006048 4.5e-48 195.7 195 46.2
CBR_g58409 Chara braunii HOM05D004915 ORTHO05D006048 2.2e-47 193.4 145 62.1
CSS0012742 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 5.0e-47 192.2 246 41.1
QL06p014871 Quercus lobata HOM05D004915 ORTHO05D006048 6.3e-42 175.3 128 63.3
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 1.8e-41 173.7 257 37.4
HanXRQChr14g0437411 Helianthus annuus HOM05D004915 ORTHO05D006048 5.0e-39 165.6 129 58.1
unitig_60.g25520 Utricularia gibba HOM05D004915 ORTHO05D006048 2.5e-38 163.3 255 39.2
HanXRQChr13g0408591 Helianthus annuus HOM05D004915 ORTHO05D006048 4.7e-37 159.1 126 57.9
PRCOL_00000090 Prasinoderma coloniale HOM05D004915 ORTHO05D006048 6.1e-37 158.7 230 38.7
vmacro05688 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 3.5e-32 142.9 137 49.6
Gohir.A07G066000 Gossypium hirsutum HOM05D004915 ORTHO05D006048 5.9e-32 142.1 140 50.0
Nitab4.5_0005170g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 3.9e-31 139.4 110 56.4
Nitab4.5_0004528g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 3.3e-30 136.3 249 34.5
DCAR_026059 Daucus carota HOM05D004915 ORTHO05D006048 7.8e-24 115.2 138 43.5
vmacro18186 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 8.6e-23 111.7 200 34.5
Ah.04g150570 Amaranthus hybridus HOM05D004915 ORTHO05D006048 1.1e-17 94.7 79 57.0
FAN06G0706 Fragaria x ananassa HOM05D004915 ORTHO05D006048 7.8e-16 88.6 100 45.0
ATR0642G001 Amborella trichopoda HOM05D004915 ORTHO05D006048 9.5e-14 81.6 55 65.5
Nitab4.5_0005170g0060 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.6e-13 80.9 81 45.7
QL06p014899 Quercus lobata HOM05D004915 ORTHO05D006048 1.2e-11 74.7 62 54.8


User provided reference genes

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