Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0106s0006 Marchantia polymorpha HOM05D006462 ORTHO05D008067 1.8e-151 539.3 285 100.0
AagrBONN_evm.TU.Sc2ySwM_117.1618 Anthoceros agrestis HOM05D006462 ORTHO05D008067 3.3e-92 342.4 283 58.7
Pp3c10_270 Physcomitrium patens HOM05D006462 ORTHO05D008067 1.1e-87 327.4 285 60.0
ATR0763G016 Amborella trichopoda HOM05D006462 ORTHO05D008067 6.8e-82 308.1 278 55.0
Ciclev10015603m.g Citrus clementina HOM05D006462 ORTHO05D008067 3.4e-81 305.8 277 54.2
Dinv10269 Davidia involucrata HOM05D006462 ORTHO05D008067 4.4e-81 305.4 279 53.4
Hma1.2p1_0365F.1_g136800 Hydrangea macrophylla HOM05D006462 ORTHO05D008067 9.9e-81 304.3 283 54.8
Os12g0630700 Oryza sativa ssp. japonica HOM05D006462 ORTHO05D008067 1.7e-80 303.5 280 55.0
Glyma.09G021500 Glycine max HOM05D006462 ORTHO05D008067 4.9e-80 302.0 283 54.1
Aqoxy4G00016 Aquilegia oxysepala HOM05D006462 ORTHO05D008067 1.1e-79 300.8 279 53.0
Glyma.15G127800 Glycine max HOM05D006462 ORTHO05D008067 1.4e-79 300.4 282 54.3
FAN21G3298 Fragaria x ananassa HOM05D006462 ORTHO05D008067 7.1e-79 298.1 277 52.7
Medtr2g029350 Medicago truncatula HOM05D006462 ORTHO05D008067 9.2e-79 297.7 282 52.5
TAR627G0872 Trochodendron aralioides HOM05D006462 ORTHO05D008067 1.2e-78 297.4 275 54.5
arahy.Tifrunner.gnm1.ann1.2J20F7 Arachis hypogaea HOM05D006462 ORTHO05D008067 2.1e-78 296.6 279 52.3
PSO675G5440 Papaver somniferum HOM05D006462 ORTHO05D008067 2.1e-78 296.6 281 52.3
FAN16G0781 Fragaria x ananassa HOM05D006462 ORTHO05D008067 3.5e-78 295.8 277 52.3
QL03p039440 Quercus lobata HOM05D006462 ORTHO05D008067 3.5e-78 295.8 279 51.6
THA.LOC104812900 Tarenaya hassleriana HOM05D006462 ORTHO05D008067 3.5e-78 295.8 284 51.8
Cfa004797 Carpinus fangiana HOM05D006462 ORTHO05D008067 4.6e-78 295.4 279 52.3
Ca_00797_v3 Cicer arietinum L. HOM05D006462 ORTHO05D008067 4.6e-78 295.4 280 52.1
MD10G1238000 Malus domestica HOM05D006462 ORTHO05D008067 7.8e-78 294.7 279 52.7
VMungo0540G1781 Vigna mungo HOM05D006462 ORTHO05D008067 7.8e-78 294.7 279 52.7
Lsat_1_v5_gn_8_117040 Lactuca sativa HOM05D006462 ORTHO05D008067 1.0e-77 294.3 282 53.2
TWI73G0634 Tripterygium wilfordii HOM05D006462 ORTHO05D008067 1.0e-77 294.3 279 53.4
FAN25G3296 Fragaria x ananassa HOM05D006462 ORTHO05D008067 1.3e-77 293.9 275 53.1
Phvul.006G130700 Phaseolus vulgaris HOM05D006462 ORTHO05D008067 1.3e-77 293.9 282 51.8
Sopen02g018560 Solanum pennellii HOM05D006462 ORTHO05D008067 1.3e-77 293.9 282 52.8
arahy.Tifrunner.gnm1.ann1.CJL35W Arachis hypogaea HOM05D006462 ORTHO05D008067 2.3e-77 293.1 279 52.0
Cc09_g06660 Coffea canephora HOM05D006462 ORTHO05D008067 2.3e-77 293.1 281 51.6
Lalb_Chr15g0088641 Lupinus albus HOM05D006462 ORTHO05D008067 2.3e-77 293.1 280 52.5
CANSAT35G0316 Cannabis sativa HOM05D006462 ORTHO05D008067 6.6e-77 291.6 282 53.2
RcHm_v2.0_Chr5g0019301 Rosa chinensis HOM05D006462 ORTHO05D008067 6.6e-77 291.6 279 52.0
Cpa.g.sc192.4 Carica papaya HOM05D006462 ORTHO05D008067 1.1e-76 290.8 277 54.2
Eucgr.D01035 Eucalyptus grandis HOM05D006462 ORTHO05D008067 1.1e-76 290.8 278 52.2
PGSC0003DMG400021145 Solanum tuberosum HOM05D006462 ORTHO05D008067 1.1e-76 290.8 282 52.5
CSS0006730 Camellia sinensis var. sinensis HOM05D006462 ORTHO05D008067 1.9e-76 290.0 279 52.0
Solyc02g069410.4 Solanum lycopersicum HOM05D006462 ORTHO05D008067 1.9e-76 290.0 282 52.5
Haze_10391 Corylus avellana HOM05D006462 ORTHO05D008067 2.5e-76 289.7 279 51.6
TPR.G26539 Trifolium pratense HOM05D006462 ORTHO05D008067 2.5e-76 289.7 282 51.8
PSO675G4077 Papaver somniferum HOM05D006462 ORTHO05D008067 3.3e-76 289.3 281 51.2
Gorai.011G050700 Gossypium raimondii HOM05D006462 ORTHO05D008067 4.3e-76 288.9 277 54.2
COL.COLO4_30938 Corchorus olitorius HOM05D006462 ORTHO05D008067 5.6e-76 288.5 279 52.7
SGA_v2.0_scaffold51G18669 Striga asiatica HOM05D006462 ORTHO05D008067 9.6e-76 287.7 279 51.3
CAN.G675.12 Capsicum annuum HOM05D006462 ORTHO05D008067 2.1e-75 286.6 282 51.8
Nn7g38003 Nelumbo nucifera HOM05D006462 ORTHO05D008067 2.1e-75 286.6 279 50.5
CiPaw.09G151400 Carya illinoinensis HOM05D006462 ORTHO05D008067 3.6e-75 285.8 279 50.2
Duzib235G0723 Durio zibethinus HOM05D006462 ORTHO05D008067 3.6e-75 285.8 281 52.7
Migut.H01302 Erythranthe guttata HOM05D006462 ORTHO05D008067 3.6e-75 285.8 283 50.5
Psat1g169320 Pisum sativum HOM05D006462 ORTHO05D008067 4.7e-75 285.4 282 51.4
Lj6g0000446 Lotus japonicus HOM05D006462 ORTHO05D008067 6.2e-75 285.0 282 52.1
PGR083G2188 Punica granatum HOM05D006462 ORTHO05D008067 1.4e-74 283.9 281 50.9
Atru.chr10.574 Acer truncatum HOM05D006462 ORTHO05D008067 5.3e-74 282.0 279 49.5
MSTRG.14813 Avicennia marina HOM05D006462 ORTHO05D008067 5.3e-74 282.0 283 49.8
HanXRQChr04g0115281 Helianthus annuus HOM05D006462 ORTHO05D008067 5.3e-74 282.0 282 50.4
Potri.015G112500 Populus trichocarpa HOM05D006462 ORTHO05D008067 9.0e-74 281.2 278 50.7
Zm00001eb032640 Zea mays HOM05D006462 ORTHO05D008067 1.5e-73 280.4 266 55.3
A06p46730 Brassica napus HOM05D006462 ORTHO05D008067 2.0e-73 280.0 271 50.9
BraA06t27545Z Brassica rapa HOM05D006462 ORTHO05D008067 2.0e-73 280.0 271 50.9
Sp2g09990 Schrenkiella parvula HOM05D006462 ORTHO05D008067 4.4e-73 278.9 271 51.3
BcaC06g31570 Brassica carinata HOM05D006462 ORTHO05D008067 5.8e-73 278.5 271 50.6
BcaC06g34485 Brassica carinata HOM05D006462 ORTHO05D008067 5.8e-73 278.5 271 50.2
C07p27950 Brassica napus HOM05D006462 ORTHO05D008067 5.8e-73 278.5 271 50.2
BolC7t43328H Brassica oleracea HOM05D006462 ORTHO05D008067 5.8e-73 278.5 271 50.2
CARHR177360 Cardamine hirsuta HOM05D006462 ORTHO05D008067 5.8e-73 278.5 271 50.9
ECA232G4418 Erigeron canadensis HOM05D006462 ORTHO05D008067 5.8e-73 278.5 279 50.2
Sabra15G0134200 Salix brachista HOM05D006462 ORTHO05D008067 9.9e-73 277.7 281 50.2
CsaV3_6G052750 Cucumis sativus L. HOM05D006462 ORTHO05D008067 1.3e-72 277.3 277 49.8
FvH4_3g11870 Fragaria vesca HOM05D006462 ORTHO05D008067 2.2e-72 276.6 277 50.2
Thhalv10000927m.g Eutrema salsugineum HOM05D006462 ORTHO05D008067 2.9e-72 276.2 271 50.6
AL8G14020 Arabidopsis lyrata HOM05D006462 ORTHO05D008067 3.8e-72 275.8 271 50.6
AT5G45170 Arabidopsis thaliana HOM05D006462 ORTHO05D008067 3.8e-72 275.8 271 50.2
Rhsim13G0127700 Rhododendron simsii HOM05D006462 ORTHO05D008067 4.9e-72 275.4 263 53.2
ClCG01G025490 Citrullus lanatus HOM05D006462 ORTHO05D008067 8.4e-72 274.6 277 49.8
MELO3C007035.2 Cucumis melo HOM05D006462 ORTHO05D008067 1.4e-71 273.9 277 49.8
EL10Ac8g19520 Beta vulgaris HOM05D006462 ORTHO05D008067 3.2e-71 272.7 277 48.4
Gohir.A10G046300 Gossypium hirsutum HOM05D006462 ORTHO05D008067 1.6e-70 270.4 263 53.6
SalBow7G1415 Salvia bowleyana HOM05D006462 ORTHO05D008067 2.1e-70 270.0 303 48.2
Gohir.D10G047600 Gossypium hirsutum HOM05D006462 ORTHO05D008067 3.5e-70 269.2 263 53.2
Aa31LG9G7960 Aethionema arabicum HOM05D006462 ORTHO05D008067 1.3e-69 267.3 304 45.7
Hma1.2p1_0365F.1_g136810 Hydrangea macrophylla HOM05D006462 ORTHO05D008067 1.3e-69 267.3 283 51.6
Carub.0008s0300 Capsella rubella HOM05D006462 ORTHO05D008067 1.7e-69 266.9 271 49.1
MD10G1237500 Malus domestica HOM05D006462 ORTHO05D008067 2.5e-68 263.1 279 47.3
Thecc.06G136400 Theobroma cacao HOM05D006462 ORTHO05D008067 7.3e-68 261.5 263 50.2
MD10G1237600 Malus domestica HOM05D006462 ORTHO05D008067 1.1e-66 257.7 277 45.8
vmacro03491 Vaccinium macrocarpon HOM05D006462 ORTHO05D008067 1.8e-66 256.9 279 48.4
Nitab4.5_0005250g0020 Nicotiana tabacum HOM05D006462 ORTHO05D008067 9.0e-66 254.6 251 53.4
GSVIVG01001717001 Vitis vinifera HOM05D006462 ORTHO05D008067 2.2e-64 250.0 284 46.5
DCAR_004313 Daucus carota HOM05D006462 ORTHO05D008067 6.0e-62 241.9 289 45.3
HPP92_012287 Vanilla planifolia HOM05D006462 ORTHO05D008067 6.0e-62 241.9 280 43.2
Peaxi162Scf00195g00131 Petunia axillaris HOM05D006462 ORTHO05D008067 7.4e-60 235.0 282 45.4
MBI18_g37401_MAGBIO Magnolia biondii HOM05D006462 ORTHO05D008067 2.0e-57 226.9 270 43.7
Sed0017395 Sechium edule HOM05D006462 ORTHO05D008067 4.9e-56 222.2 226 50.0
AUR62034022 Chenopodium quinoa HOM05D006462 ORTHO05D008067 3.2e-55 219.5 234 47.4
unitig_21.g20206 Utricularia gibba HOM05D006462 ORTHO05D008067 3.9e-53 212.6 251 46.2
Sc16g0001760 Simmondsia chinensis HOM05D006462 ORTHO05D008067 6.7e-53 211.8 199 53.8
SMO358G0034 Selaginella moellendorffii HOM05D006462 ORTHO05D008067 1.5e-52 210.7 231 52.4
CBR_g32011 Chara braunii HOM05D006462 ORTHO05D008067 7.6e-49 198.4 328 36.0
Prupe.4G106200 Prunus persica HOM05D006462 ORTHO05D008067 6.7e-45 185.3 175 50.3
Manes.16G054132 Manihot esculenta HOM05D006462 ORTHO05D008067 4.8e-43 179.1 180 49.4
RcHm_v2.0_Chr5g0019331 Rosa chinensis HOM05D006462 ORTHO05D008067 1.5e-41 174.1 158 48.7
AUR62043004 Chenopodium quinoa HOM05D006462 ORTHO05D008067 1.7e-40 170.6 319 35.1
Lj2A355T38 Lonicera japonica HOM05D006462 ORTHO05D008067 9.4e-39 164.9 154 57.1
Nitab4.5_0011847g0040 Nicotiana tabacum HOM05D006462 ORTHO05D008067 3.3e-36 156.4 159 53.5
SEGI_02488 Sequoiadendron giganteum HOM05D006462 ORTHO05D008067 3.1e-34 149.8 145 55.2
Nitab4.5_0011847g0020 Nicotiana tabacum HOM05D006462 ORTHO05D008067 6.5e-32 142.1 124 53.2
RcHm_v2.0_Chr5g0019341 Rosa chinensis HOM05D006462 ORTHO05D008067 2.9e-24 116.7 106 56.6
CSS0042902 Camellia sinensis var. sinensis HOM05D006462 ORTHO05D008067 3.2e-23 113.2 112 57.1
Cre06.g288800 Chlamydomonas reinhardtii HOM05D006462 ORTHO05D008067 4.7e-22 109.4 302 28.1
MD15G1410000 Malus domestica HOM05D006462 ORTHO05D008067 4.4e-20 102.8 115 41.7
CBR_g22462 Chara braunii HOM05D002693 ORTHO05D008074 2.2e-16 90.5 270 26.3
SEGI_18096 Sequoiadendron giganteum HOM05D002693 ORTHO05D008074 7.2e-15 85.5 270 25.9
Mapoly0082s0060 Marchantia polymorpha HOM05D002693 ORTHO05D008074 2.1e-14 84.0 271 24.4
AagrBONN_evm.TU.Sc2ySwM_362.2434 Anthoceros agrestis HOM05D002693 ORTHO05D008074 2.3e-13 80.5 146 34.2
Pp3c10_2693 Physcomitrium patens HOM05D002693 ORTHO05D008074 6.8e-13 79.0 144 32.6
TWI23G0591 Tripterygium wilfordii HOM05D002693 ORTHO05D008074 2.0e-12 77.4 146 31.5
HPP92_010508 Vanilla planifolia HOM05D002693 ORTHO05D008074 2.0e-12 77.4 270 24.8
ATR0824G037 Amborella trichopoda HOM05D002693 ORTHO05D008074 4.4e-12 76.3 270 25.9
arahy.Tifrunner.gnm1.ann1.3ZI7DD Arachis hypogaea HOM05D002693 ORTHO05D008074 4.4e-12 76.3 270 25.9
Os03g0565200 Oryza sativa ssp. japonica HOM05D002693 ORTHO05D008074 5.7e-12 75.9 146 32.2
PGR044G0360 Punica granatum HOM05D002693 ORTHO05D008074 7.5e-12 75.5 146 30.8
Cfa018903 Carpinus fangiana HOM05D002693 ORTHO05D008074 9.7e-12 75.1 146 30.8
Glyma.04G191700 Glycine max HOM05D002693 ORTHO05D008074 9.7e-12 75.1 146 30.8
Glyma.06G174200 Glycine max HOM05D002693 ORTHO05D008074 9.7e-12 75.1 270 25.2
Cre03.g206550 Chlamydomonas reinhardtii HOM05D002693 ORTHO05D008074 2.2e-11 73.9 290 24.8
Ciclev10020897m.g Citrus clementina HOM05D002693 ORTHO05D008074 2.2e-11 73.9 146 30.8
Zm00001eb113090 Zea mays HOM05D002693 ORTHO05D008074 2.8e-11 73.6 146 31.5
Lj2A355G32 Lonicera japonica HOM05D006462 ORTHO05D008067 3.7e-11 73.2 97 40.2
Aa31LG4G16990 Aethionema arabicum HOM05D002693 ORTHO05D008074 4.8e-11 72.8 270 23.0
MSTRG.11525 Avicennia marina HOM05D002693 ORTHO05D008074 4.8e-11 72.8 146 31.5
Thecc.03G121000 Theobroma cacao HOM05D002693 ORTHO05D008074 4.8e-11 72.8 146 30.1
SalBow5G1929 Salvia bowleyana HOM05D002693 ORTHO05D008074 6.3e-11 72.4 146 30.1
Sed0019566 Sechium edule HOM05D002693 ORTHO05D008074 8.3e-11 72.0 270 23.0
Oeu053509.1 Olea europaea HOM05D002693 ORTHO05D008074 1.1e-10 71.6 146 29.5
CsaV3_1G000830 Cucumis sativus L. HOM05D002693 ORTHO05D008074 1.4e-10 71.2 146 29.5
Thhalv10010540m.g Eutrema salsugineum HOM05D002693 ORTHO05D008074 1.4e-10 71.2 270 22.6
Manes.06G113900 Manihot esculenta HOM05D002693 ORTHO05D008074 1.4e-10 71.2 146 30.1
Peaxi162Scf00089g00838 Petunia axillaris HOM05D002693 ORTHO05D008074 1.4e-10 71.2 270 23.3
CAN.G472.45 Capsicum annuum HOM05D002693 ORTHO05D008074 1.8e-10 70.9 146 30.1
CiPaw.11G013400 Carya illinoinensis HOM05D002693 ORTHO05D008074 1.8e-10 70.9 146 30.1
QL10p005573 Quercus lobata HOM05D002693 ORTHO05D008074 1.8e-10 70.9 146 30.1
SEGI_23737 Sequoiadendron giganteum HOM05D006462 ORTHO05D008067 1.8e-10 70.9 55 60.0
unitig_0.g1407 Utricularia gibba HOM05D002693 ORTHO05D008074 1.8e-10 70.9 270 24.4
MELO3C026235.2 Cucumis melo HOM05D002693 ORTHO05D008074 2.4e-10 70.5 146 28.8
PGSC0003DMG400015165 Solanum tuberosum HOM05D002693 ORTHO05D008074 2.4e-10 70.5 146 30.1
Gohir.A10G086200 Gossypium hirsutum HOM05D006462 ORTHO05D008067 3.1e-10 70.1 69 44.9
Nitab4.5_0002531g0130 Nicotiana tabacum HOM05D002693 ORTHO05D008074 3.1e-10 70.1 146 29.5
Cc04_g10650 Coffea canephora HOM05D002693 ORTHO05D008074 4.1e-10 69.7 146 28.8
Nitab4.5_0001360g0120 Nicotiana tabacum HOM05D002693 ORTHO05D008074 4.1e-10 69.7 146 29.5
Sopen03g030730 Solanum pennellii HOM05D002693 ORTHO05D008074 5.3e-10 69.3 270 24.4
CSS0015214 Camellia sinensis var. sinensis HOM05D006462 ORTHO05D008067 7.0e-10 68.9 53 54.7
Solyc03g111610.3 Solanum lycopersicum HOM05D002693 ORTHO05D008074 7.0e-10 68.9 270 24.4
PRCOL_00006321 Prasinoderma coloniale HOM05D006462 ORTHO05D008074 4.5e-09 66.2 304 26.6
MD10G1237800 Malus domestica HOM05D006462 ORTHO05D008067 2.9e-08 63.5 82 37.8
COL.COLO4_04553 Corchorus olitorius HOM05D002693 ORTHO05D008074 2.5e-07 60.5 122 30.3
SEGI_41218 Sequoiadendron giganteum HOM05D006462 ORTHO05D008067 4.2e-07 59.7 55 49.1
MCO09G072 Micromonas commoda HOM05D006462 ORTHO05D008067 2.1e-06 57.4 57 47.4
arahy.Tifrunner.gnm1.ann1.CQ0UNW Arachis hypogaea HOM05D000112 ORTHO05D008067 3.6e-06 56.6 37 62.2


User provided reference genes

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