Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 8.0e-241 836.6 413 100.0
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 3.5e-71 273.1 244 57.8
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 5.1e-70 269.2 265 54.0
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 1.2e-66 258.1 276 52.5
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 1.1e-48 198.4 359 35.7
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 7.9e-47 192.2 161 56.5
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 1.1e-45 188.3 207 47.8
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 7.4e-45 185.7 192 47.4
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 7.4e-45 185.7 166 51.8
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 9.7e-45 185.3 187 51.3
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 9.7e-45 185.3 187 51.3
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 9.7e-45 185.3 171 54.4
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 1.3e-44 184.9 166 52.4
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 2.2e-44 184.1 166 53.0
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 1.1e-43 181.8 165 52.7
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 1.1e-43 181.8 208 47.1
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 1.4e-43 181.4 158 56.3
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 4.1e-43 179.9 167 51.5
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 9.1e-43 178.7 166 51.8
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.5e-42 177.9 168 50.0
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 1.5e-42 177.9 166 50.6
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 1.5e-42 177.9 263 40.3
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 2.0e-42 177.6 168 50.0
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 2.0e-42 177.6 184 49.5
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 3.4e-42 176.8 168 51.2
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 4.5e-42 176.4 166 51.2
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 7.7e-42 175.6 166 51.8
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 1.0e-41 175.3 167 52.1
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.0e-41 175.3 183 48.1
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 1.3e-41 174.9 200 47.0
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.3e-41 174.9 166 50.6
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 1.7e-41 174.5 166 53.0
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 2.2e-41 174.1 202 46.0
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.2e-41 174.1 164 51.8
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.2e-41 174.1 202 46.0
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 2.2e-41 174.1 166 51.8
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 2.9e-41 173.7 183 47.5
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 3.8e-41 173.3 163 55.2
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 3.8e-41 173.3 159 53.5
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 3.8e-41 173.3 183 47.5
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 5.0e-41 172.9 165 51.5
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 6.5e-41 172.6 183 48.6
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 6.5e-41 172.6 150 56.7
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 8.5e-41 172.2 166 51.2
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 8.5e-41 172.2 186 50.0
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 8.5e-41 172.2 157 51.6
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 1.1e-40 171.8 166 50.0
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 1.1e-40 171.8 166 50.0
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 1.1e-40 171.8 218 41.7
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 1.1e-40 171.8 164 51.2
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.1e-40 171.8 171 52.6
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 1.4e-40 171.4 165 51.5
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 1.4e-40 171.4 171 52.6
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 1.4e-40 171.4 171 52.6
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 1.4e-40 171.4 171 53.2
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 1.4e-40 171.4 204 45.6
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 2.5e-40 170.6 205 45.9
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 2.5e-40 170.6 186 48.4
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 2.5e-40 170.6 193 45.1
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 2.5e-40 170.6 166 51.2
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 3.2e-40 170.2 166 50.0
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 3.2e-40 170.2 167 49.1
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 4.2e-40 169.9 169 47.9
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 4.2e-40 169.9 168 50.6
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 4.2e-40 169.9 174 50.6
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 4.2e-40 169.9 163 51.5
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 4.2e-40 169.9 166 49.4
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 5.5e-40 169.5 171 52.0
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 5.5e-40 169.5 166 48.8
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 5.5e-40 169.5 166 50.6
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 5.5e-40 169.5 208 45.7
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 5.5e-40 169.5 183 47.0
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 7.2e-40 169.1 192 45.8
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 7.2e-40 169.1 226 42.9
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 9.4e-40 168.7 151 53.6
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.2e-39 168.3 176 47.7
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 1.2e-39 168.3 207 44.4
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 1.2e-39 168.3 188 46.8
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 2.1e-39 167.5 159 52.2
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 2.1e-39 167.5 186 47.8
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 2.1e-39 167.5 166 51.2
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 2.1e-39 167.5 166 48.8
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 2.1e-39 167.5 162 50.0
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 2.7e-39 167.2 176 51.7
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 3.6e-39 166.8 238 41.2
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 3.6e-39 166.8 167 47.9
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 4.7e-39 166.4 166 48.2
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 6.1e-39 166.0 185 47.0
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 6.1e-39 166.0 162 51.2
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 6.1e-39 166.0 162 51.2
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 6.1e-39 166.0 157 52.2
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 7.9e-39 165.6 166 50.0
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 7.9e-39 165.6 220 44.1
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 7.9e-39 165.6 220 44.1
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 7.9e-39 165.6 209 44.0
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 1.0e-38 165.2 181 48.6
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.0e-38 165.2 143 53.8
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 1.0e-38 165.2 165 47.9
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 1.0e-38 165.2 159 50.9
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 1.4e-38 164.9 238 41.2
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 1.4e-38 164.9 143 53.1
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 1.8e-38 164.5 157 51.6
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.8e-38 164.5 170 49.4
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 1.8e-38 164.5 167 47.3
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 2.3e-38 164.1 162 50.6
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 2.3e-38 164.1 162 50.6
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 2.3e-38 164.1 162 50.6
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 2.3e-38 164.1 162 50.6
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 2.3e-38 164.1 157 51.6
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 2.3e-38 164.1 157 51.0
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 2.3e-38 164.1 208 45.7
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 2.3e-38 164.1 209 41.6
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 3.0e-38 163.7 168 48.2
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 3.0e-38 163.7 143 53.8
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 3.9e-38 163.3 207 42.0
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 3.9e-38 163.3 202 44.6
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 3.9e-38 163.3 145 52.4
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 3.9e-38 163.3 197 42.6
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 6.7e-38 162.5 165 47.3
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 6.7e-38 162.5 221 42.1
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 8.8e-38 162.2 166 47.6
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 2.0e-37 161.0 166 48.2
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 2.6e-37 160.6 162 48.1
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 2.6e-37 160.6 159 49.7
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 3.3e-37 160.2 167 45.5
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 4.4e-37 159.8 157 49.0
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 4.4e-37 159.8 166 47.6
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 4.4e-37 159.8 166 47.6
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 7.4e-37 159.1 165 46.1
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 9.7e-37 158.7 180 45.0
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 9.7e-37 158.7 161 50.3
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 1.3e-36 158.3 170 47.6
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 2.2e-36 157.5 218 44.0
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 2.8e-36 157.1 167 49.1
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.1e-35 155.2 135 56.3
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.4e-35 154.8 159 49.1
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 3.1e-35 153.7 209 42.1
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 3.1e-35 153.7 202 42.6
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 5.3e-35 152.9 186 44.1
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 7.7e-34 149.1 197 42.6
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 7.7e-34 149.1 159 47.2
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 1.3e-33 148.3 143 51.0
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 1.7e-33 147.9 200 38.5
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 3.8e-33 146.7 143 47.6
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 1.9e-32 144.4 158 47.5
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.2e-31 141.7 122 54.9
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 6.7e-30 136.0 122 50.0
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 8.8e-30 135.6 102 58.8
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 2.4e-27 127.5 133 45.1
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 7.0e-27 125.9 230 33.5
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 1.7e-25 121.3 175 37.7
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 3.0e-22 110.5 90 55.6
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 3.4e-21 107.1 201 32.8
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 3.4e-21 107.1 201 32.8
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 2.0e-18 97.8 117 44.4
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 2.8e-07 60.8 54 46.3
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 8.0e-07 59.3 71 43.7


User provided reference genes

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