Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0103s0077 Marchantia polymorpha HOM05D001663 ORTHO05D005717 3.3e-254 881.3 478 100.0
Pp3c5_11170 Physcomitrium patens HOM05D001663 ORTHO05D005717 1.1e-116 424.5 492 48.4
FvH4_5g38340 Fragaria vesca HOM05D001663 ORTHO05D005717 2.8e-80 303.5 487 39.4
Sabra02G0071900 Salix brachista HOM05D001663 ORTHO05D005717 1.4e-79 301.2 499 38.9
Nn5g28968 Nelumbo nucifera HOM05D001663 ORTHO05D005717 2.4e-79 300.4 490 39.8
Eucgr.H00930 Eucalyptus grandis HOM05D001663 ORTHO05D005717 3.1e-79 300.1 491 39.5
Cpa.g.sc1782.1 Carica papaya HOM05D001663 ORTHO05D005717 4.1e-79 299.7 489 40.1
TWI12G1423 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 4.1e-79 299.7 493 39.8
QL12p035556 Quercus lobata HOM05D001663 ORTHO05D005717 5.3e-79 299.3 490 39.4
TAR376G0684 Trochodendron aralioides HOM05D001663 ORTHO05D005717 7.0e-79 298.9 487 39.4
FAN18G1299 Fragaria x ananassa HOM05D001663 ORTHO05D005717 9.1e-79 298.5 486 39.1
Solyc04g072440.4 Solanum lycopersicum HOM05D001663 ORTHO05D005717 9.1e-79 298.5 501 38.3
Sopen04g028600 Solanum pennellii HOM05D001663 ORTHO05D005717 9.1e-79 298.5 501 38.3
PGSC0003DMG400027563 Solanum tuberosum HOM05D001663 ORTHO05D005717 2.0e-78 297.4 495 39.6
Prupe.1G508500 Prunus persica HOM05D001663 ORTHO05D005717 2.6e-78 297.0 490 38.6
Manes.18G101600 Manihot esculenta HOM05D001663 ORTHO05D005717 3.5e-78 296.6 490 39.4
CiPaw.05G231300 Carya illinoinensis HOM05D001663 ORTHO05D005717 5.9e-78 295.8 489 39.7
FAN08G2783 Fragaria x ananassa HOM05D001663 ORTHO05D005717 5.9e-78 295.8 484 39.0
FAN04G0194 Fragaria x ananassa HOM05D001663 ORTHO05D005717 7.7e-78 295.4 488 39.5
ATR0564G349 Amborella trichopoda HOM05D001663 ORTHO05D005717 1.3e-77 294.7 493 37.5
ECA246G3782 Erigeron canadensis HOM05D001663 ORTHO05D005717 1.3e-77 294.7 495 39.6
Medtr5g061040 Medicago truncatula HOM05D001663 ORTHO05D005717 1.3e-77 294.7 490 37.8
CANSAT25G1457 Cannabis sativa HOM05D001663 ORTHO05D005717 2.2e-77 293.9 492 38.6
Potri.002G090900 Populus trichocarpa HOM05D001663 ORTHO05D005717 2.9e-77 293.5 485 39.6
Lalb_Chr10g0102081 Lupinus albus HOM05D001663 ORTHO05D005717 3.8e-77 293.1 492 38.2
Dinv44724 Davidia involucrata HOM05D001663 ORTHO05D005717 5.0e-77 292.7 490 38.6
Ca_26536_v3 Cicer arietinum L. HOM05D001663 ORTHO05D005717 1.5e-76 291.2 498 37.6
HanXRQChr05g0162261 Helianthus annuus HOM05D001663 ORTHO05D005717 1.5e-76 291.2 494 38.5
TWI56G1202 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 1.5e-76 291.2 490 38.2
DCAR_003554 Daucus carota HOM05D001663 ORTHO05D005717 4.2e-76 289.7 481 37.6
Migut.C00211 Erythranthe guttata HOM05D001663 ORTHO05D005717 4.2e-76 289.7 488 37.7
EL10Ac8g18308 Beta vulgaris HOM05D001663 ORTHO05D005717 5.5e-76 289.3 490 39.6
CAN.G617.5 Capsicum annuum HOM05D001663 ORTHO05D005717 5.5e-76 289.3 496 37.5
Ciclev10001001m.g Citrus clementina HOM05D001663 ORTHO05D005717 1.6e-75 287.7 491 37.7
MD15G1361100 Malus domestica HOM05D001663 ORTHO05D005717 2.1e-75 287.3 484 38.0
TPR.G30426 Trifolium pratense HOM05D001663 ORTHO05D005717 4.7e-75 286.2 498 37.3
Cc10_g06030 Coffea canephora HOM05D001663 ORTHO05D005717 6.1e-75 285.8 492 37.4
Nitab4.5_0004952g0050 Nicotiana tabacum HOM05D001663 ORTHO05D005717 8.0e-75 285.4 490 37.8
PSO447G0047 Papaver somniferum HOM05D001663 ORTHO05D005717 8.0e-75 285.4 491 38.1
Nitab4.5_0001915g0140 Nicotiana tabacum HOM05D001663 ORTHO05D005717 1.0e-74 285.0 494 37.4
PSO210G6007 Papaver somniferum HOM05D001663 ORTHO05D005717 1.0e-74 285.0 491 38.3
vmacro04774 Vaccinium macrocarpon HOM05D001663 ORTHO05D005717 2.3e-74 283.9 514 36.8
Aqoxy3G00244 Aquilegia oxysepala HOM05D001663 ORTHO05D005717 3.0e-74 283.5 524 36.8
Lalb_Chr04g0253241 Lupinus albus HOM05D001663 ORTHO05D005717 3.0e-74 283.5 492 37.2
Ah.09g230050 Amaranthus hybridus HOM05D001663 ORTHO05D005717 8.8e-74 282.0 481 37.4
MD08G1174500 Malus domestica HOM05D001663 ORTHO05D005717 8.8e-74 282.0 485 37.3
Lj1g0004140 Lotus japonicus HOM05D001663 ORTHO05D005717 1.5e-73 281.2 494 37.4
Nn1g05239 Nelumbo nucifera HOM05D001663 ORTHO05D005717 5.7e-73 279.3 489 38.2
GSVIVG01008963001 Vitis vinifera HOM05D001663 ORTHO05D005717 5.7e-73 279.3 492 38.2
CSS0006833 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 7.5e-73 278.9 486 38.7
Aa31LG9G14450 Aethionema arabicum HOM05D001663 ORTHO05D005717 9.7e-73 278.5 491 37.3
CARHR259570 Cardamine hirsuta HOM05D001663 ORTHO05D005717 1.3e-72 278.1 486 36.8
COL.COLO4_16510 Corchorus olitorius HOM05D001663 ORTHO05D005717 2.2e-72 277.3 491 37.9
Gorai.005G092500 Gossypium raimondii HOM05D001663 ORTHO05D005717 2.2e-72 277.3 495 36.6
Phvul.008G169200 Phaseolus vulgaris HOM05D001663 ORTHO05D005717 2.8e-72 276.9 489 36.2
RhsimUnG0073000 Rhododendron simsii HOM05D001663 ORTHO05D005717 3.7e-72 276.6 488 38.1
Rhsim07G0199300 Rhododendron simsii HOM05D001663 ORTHO05D005717 4.8e-72 276.2 489 38.2
THA.LOC104816946 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 4.8e-72 276.2 491 38.1
Lsat_1_v5_gn_6_102021 Lactuca sativa HOM05D001663 ORTHO05D005717 6.3e-72 275.8 501 38.1
THA.LOC104813136 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 6.3e-72 275.8 487 37.4
Thecc.08G114700 Theobroma cacao HOM05D001663 ORTHO05D005717 1.1e-71 275.0 491 36.9
A09p30170 Brassica napus HOM05D001663 ORTHO05D005717 1.4e-71 274.6 495 36.0
MELO3C008130.2 Cucumis melo HOM05D001663 ORTHO05D005717 1.4e-71 274.6 497 37.6
MSTRG.24955 Avicennia marina HOM05D001663 ORTHO05D005717 3.1e-71 273.5 484 37.6
Duzib041G0602 Durio zibethinus HOM05D001663 ORTHO05D005717 3.1e-71 273.5 493 36.1
BcaC04g20910 Brassica carinata HOM05D001663 ORTHO05D005717 4.1e-71 273.1 495 35.8
C09p38040 Brassica napus HOM05D001663 ORTHO05D005717 4.1e-71 273.1 495 35.8
BolC9t56640H Brassica oleracea HOM05D001663 ORTHO05D005717 4.1e-71 273.1 495 35.8
Gohir.A02G075400 Gossypium hirsutum HOM05D001663 ORTHO05D005717 4.1e-71 273.1 495 36.2
BcaB01g01352 Brassica carinata HOM05D001663 ORTHO05D005717 5.3e-71 272.7 495 36.0
Glyma.13G085400 Glycine max HOM05D001663 ORTHO05D005717 5.3e-71 272.7 494 36.6
FAN13G3230 Fragaria x ananassa HOM05D001663 ORTHO05D005717 1.2e-70 271.6 471 38.0
ClCG11G008030 Citrullus lanatus HOM05D001663 ORTHO05D005717 2.7e-70 270.4 507 36.9
AT4G08540 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 4.5e-70 269.6 489 36.6
Sp6g09330 Schrenkiella parvula HOM05D001663 ORTHO05D005717 5.9e-70 269.2 493 36.1
Carub.0006s2708 Capsella rubella HOM05D001663 ORTHO05D005717 7.7e-70 268.9 489 37.0
CsaV3_2G033570 Cucumis sativus L. HOM05D001663 ORTHO05D005717 1.3e-69 268.1 491 37.7
PGR042G1550 Punica granatum HOM05D001663 ORTHO05D005717 1.3e-69 268.1 483 38.9
RcHm_v2.0_Chr7g0240361 Rosa chinensis HOM05D001663 ORTHO05D005717 2.2e-69 267.3 434 38.9
arahy.Tifrunner.gnm1.ann1.7M6WCL Arachis hypogaea HOM05D001663 ORTHO05D005717 1.1e-68 265.0 489 36.2
Thhalv10028627m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 1.5e-68 264.6 489 35.6
Gohir.D02G082500 Gossypium hirsutum HOM05D001663 ORTHO05D005717 1.9e-68 264.2 495 36.2
Duzib093G0504 Durio zibethinus HOM05D001663 ORTHO05D005717 3.6e-67 260.0 491 36.5
Gohir.D05G269900 Gossypium hirsutum HOM05D001663 ORTHO05D005717 1.0e-66 258.5 491 35.4
Gorai.009G282600 Gossypium raimondii HOM05D001663 ORTHO05D005717 1.0e-66 258.5 491 35.4
MSTRG.947 Avicennia marina HOM05D001663 ORTHO05D005717 1.8e-66 257.7 479 34.2
Hma1.2p1_0529F.1_g173150 Hydrangea macrophylla HOM05D001663 ORTHO05D005717 2.3e-66 257.3 493 36.1
SGA_v2.0_scaffold48G18009 Striga asiatica HOM05D001663 ORTHO05D005717 6.8e-66 255.8 479 37.4
Haze_00550 Corylus avellana HOM05D001663 ORTHO05D005717 1.2e-65 255.0 478 35.6
Sed0003415 Sechium edule HOM05D001663 ORTHO05D005717 3.4e-65 253.4 489 36.8
Cfa015941 Carpinus fangiana HOM05D001663 ORTHO05D005717 9.8e-65 251.9 479 36.3
AUR62033240 Chenopodium quinoa HOM05D001663 ORTHO05D005717 7.0e-63 245.7 431 37.8
AL6G42350 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 2.7e-62 243.8 506 34.2
Atru.chr13.1295 Acer truncatum HOM05D001663 ORTHO05D005717 1.0e-61 241.9 368 39.7
Glyma.14G167200 Glycine max HOM05D001663 ORTHO05D005717 1.3e-61 241.5 387 38.0
Lj6A263G20 Lonicera japonica HOM05D001663 ORTHO05D005717 1.3e-61 241.5 482 35.3
Sc18g0007560 Simmondsia chinensis HOM05D001663 ORTHO05D005717 6.5e-61 239.2 366 39.3
Peaxi162Scf00756g00434 Petunia axillaris HOM05D001663 ORTHO05D005717 8.5e-61 238.8 475 35.8
Hund26324 Selenicereus undatus HOM05D001663 ORTHO05D005717 1.5e-60 238.0 393 40.2
Psat2g076640 Pisum sativum HOM05D001663 ORTHO05D005717 2.8e-59 233.8 366 38.0
CSS0003227 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 4.7e-59 233.0 366 38.3
SalBow7G1241 Salvia bowleyana HOM05D001663 ORTHO05D005717 6.1e-59 232.6 541 32.5
CDE05G2350 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 2.7e-54 217.2 356 40.7
HPP92_009232 Vanilla planifolia HOM05D001663 ORTHO05D005717 3.8e-53 213.4 362 36.2
AagrBONN_evm.TU.Sc2ySwM_344.1096 Anthoceros agrestis HOM05D001663 ORTHO05D005717 1.9e-52 211.1 436 33.9
BraA09t38581Z Brassica rapa HOM05D001663 ORTHO05D005717 2.8e-51 207.2 595 29.2
MBI02_g34272_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 2.8e-51 207.2 310 41.0
CBR_g4197 Chara braunii HOM05D001663 ORTHO05D005717 1.8e-50 204.5 516 32.8
Dinv13062 Davidia involucrata HOM05D001663 ORTHO05D005717 9.8e-49 198.7 340 37.9
Actinidia29571 Actinidia chinensis HOM05D001663 ORTHO05D005717 1.2e-46 191.8 270 41.5
Gohir.A05G268300 Gossypium hirsutum HOM05D001663 ORTHO05D005717 1.6e-46 191.4 310 39.7
BolC6t40206H Brassica oleracea HOM05D001663 ORTHO05D005717 1.3e-45 188.3 454 31.9
AUR62021323 Chenopodium quinoa HOM05D001663 ORTHO05D005717 1.7e-45 188.0 474 32.1
BraA07t31838Z Brassica rapa HOM05D001663 ORTHO05D005717 2.3e-45 187.6 454 31.7
Zm00001eb327970 Zea mays HOM05D001663 ORTHO05D005717 5.0e-45 186.4 449 31.2
A07p43160 Brassica napus HOM05D001663 ORTHO05D005717 6.6e-45 186.0 370 34.3
AL2G38170 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 1.9e-44 184.5 459 32.5
C06p51850 Brassica napus HOM05D001663 ORTHO05D005717 3.3e-44 183.7 370 34.3
Carub.0002s2479 Capsella rubella HOM05D001663 ORTHO05D005717 5.6e-44 183.0 463 32.6
AT1G77890 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 2.8e-43 180.6 377 34.5
BcaB03g15913 Brassica carinata HOM05D001663 ORTHO05D005717 3.6e-43 180.3 452 31.9
Zm00001eb109770 Zea mays HOM05D001663 ORTHO05D005717 1.4e-42 178.3 389 33.4
unitig_747.g21547 Utricularia gibba HOM05D001663 ORTHO05D005717 8.9e-42 175.6 474 30.6
CARHR071380 Cardamine hirsuta HOM05D001663 ORTHO05D005717 2.6e-41 174.1 453 31.3
Os07g0626300 Oryza sativa ssp. japonica HOM05D001663 ORTHO05D005717 1.1e-39 168.7 406 31.5
Sp5g33060 Schrenkiella parvula HOM05D001663 ORTHO05D005717 3.2e-39 167.2 454 30.6
Aa31LG4G7980 Aethionema arabicum HOM05D001663 ORTHO05D005717 4.1e-39 166.8 480 29.8
SEGI_08259 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 1.5e-36 158.3 293 37.5
Oeu035400.3 Olea europaea HOM05D001663 ORTHO05D005717 1.2e-33 148.7 204 43.1
arahy.Tifrunner.gnm1.ann1.ZLN6KV Arachis hypogaea HOM05D001663 ORTHO05D005717 8.3e-32 142.5 232 37.5
SEGI_31098 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 1.1e-31 142.1 187 43.3
VMungo0647G1200 Vigna mungo HOM05D001663 ORTHO05D005717 1.4e-31 141.7 228 36.8
arahy.Tifrunner.gnm1.ann1.8X036G Arachis hypogaea HOM05D001663 ORTHO05D005717 4.3e-28 130.2 259 35.5
Thhalv10018451m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 5.8e-25 119.8 476 28.6
Actinidia33165 Actinidia chinensis HOM05D001663 ORTHO05D005717 1.3e-24 118.6 250 32.0
MBI02_g34271_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 3.3e-20 104.0 176 35.8
Atru.chr13.1296 Acer truncatum HOM05D001663 ORTHO05D005717 1.8e-10 71.6 39 76.9
Actinidia33166 Actinidia chinensis HOM05D001663 ORTHO05D005717 4.5e-09 67.0 39 71.8
Cre08.g377600 Chlamydomonas reinhardtii HOM05D001663 ORTHO05D005717 1.7e-08 65.1 86 39.5


User provided reference genes

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