Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 1.8e-248 862.1 426 100.0
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 2.9e-108 396.4 433 51.3
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 2.4e-99 366.7 419 47.5
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 2.8e-95 353.2 427 46.4
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 2.8e-95 353.2 427 44.5
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 8.1e-95 351.7 420 46.7
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 4.0e-94 349.4 422 46.2
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 8.9e-94 348.2 421 46.6
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 8.9e-94 348.2 430 46.5
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 8.9e-94 348.2 421 46.8
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 1.2e-93 347.8 420 47.6
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 1.5e-93 347.4 432 45.6
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 2.0e-93 347.1 420 46.0
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 2.0e-93 347.1 420 46.2
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 2.0e-93 347.1 424 46.5
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 2.0e-93 347.1 427 45.4
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 4.4e-93 345.9 433 46.0
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 9.9e-93 344.7 420 46.7
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 9.9e-93 344.7 290 58.6
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 9.9e-93 344.7 422 46.7
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 1.3e-92 344.4 420 46.4
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 1.3e-92 344.4 388 47.4
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 1.3e-92 344.4 427 45.2
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 1.3e-92 344.4 427 45.4
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 1.7e-92 344.0 419 45.6
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 1.7e-92 344.0 420 47.1
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 2.9e-92 343.2 435 45.5
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 2.9e-92 343.2 430 46.0
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 6.4e-92 342.0 256 64.5
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 1.1e-91 341.3 388 46.9
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 1.4e-91 340.9 431 44.3
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 1.4e-91 340.9 431 44.8
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 1.4e-91 340.9 420 45.5
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 1.4e-91 340.9 420 46.0
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 1.4e-91 340.9 433 45.5
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 1.9e-91 340.5 386 48.4
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 1.9e-91 340.5 426 46.0
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 2.4e-91 340.1 420 44.8
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 2.4e-91 340.1 419 46.1
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 2.4e-91 340.1 420 46.9
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 3.2e-91 339.7 419 46.5
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 3.2e-91 339.7 426 45.3
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 3.2e-91 339.7 427 44.0
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 4.1e-91 339.3 428 45.6
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 7.1e-91 338.6 419 46.3
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 7.1e-91 338.6 418 47.6
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 9.2e-91 338.2 428 45.3
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 9.2e-91 338.2 381 48.3
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 9.2e-91 338.2 419 44.4
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 9.2e-91 338.2 423 46.6
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 1.2e-90 337.8 384 47.9
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 1.2e-90 337.8 248 63.7
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 1.2e-90 337.8 425 44.5
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 1.6e-90 337.4 431 43.9
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.6e-90 337.4 424 46.0
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 2.1e-90 337.0 262 59.2
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 2.1e-90 337.0 420 46.0
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 2.1e-90 337.0 419 45.6
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.7e-90 336.7 429 45.0
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 2.7e-90 336.7 381 48.8
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 2.7e-90 336.7 428 44.2
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 3.5e-90 336.3 419 46.1
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 3.5e-90 336.3 388 46.9
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 3.5e-90 336.3 419 46.5
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 3.5e-90 336.3 425 44.2
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 4.6e-90 335.9 379 47.8
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 6.0e-90 335.5 428 44.6
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 6.0e-90 335.5 381 47.8
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 7.8e-90 335.1 421 45.1
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 1.0e-89 334.7 390 45.6
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 1.3e-89 334.3 377 48.0
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 1.3e-89 334.3 377 47.7
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.7e-89 334.0 429 45.2
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 1.7e-89 334.0 421 45.6
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 1.7e-89 334.0 256 61.3
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 2.3e-89 333.6 382 48.7
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 2.3e-89 333.6 266 60.2
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 3.0e-89 333.2 381 47.8
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 3.9e-89 332.8 382 47.6
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 3.9e-89 332.8 429 44.8
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 3.9e-89 332.8 431 45.0
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 5.1e-89 332.4 420 45.2
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 6.6e-89 332.0 421 45.8
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 6.6e-89 332.0 421 45.8
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 6.6e-89 332.0 421 45.4
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 8.6e-89 331.6 378 47.1
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 1.5e-88 330.9 387 46.3
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 1.5e-88 330.9 387 46.3
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 1.9e-88 330.5 422 45.0
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 1.9e-88 330.5 416 45.2
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 2.5e-88 330.1 432 43.3
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 2.5e-88 330.1 286 57.0
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 3.3e-88 329.7 423 45.2
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 4.3e-88 329.3 423 45.2
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 4.3e-88 329.3 421 43.2
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 5.6e-88 328.9 252 60.3
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 5.6e-88 328.9 252 61.5
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 9.5e-88 328.2 255 58.8
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 2.1e-87 327.0 425 44.2
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 2.8e-87 326.6 377 46.9
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 4.7e-87 325.9 253 60.9
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 6.2e-87 325.5 246 60.2
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 6.2e-87 325.5 388 47.9
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 6.2e-87 325.5 425 44.0
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 8.1e-87 325.1 252 60.7
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 8.1e-87 325.1 257 58.0
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 1.1e-86 324.7 393 46.6
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 1.4e-86 324.3 417 44.1
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 1.4e-86 324.3 378 46.6
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 1.8e-86 323.9 255 59.2
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 2.4e-86 323.6 296 53.0
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 5.2e-86 322.4 246 60.2
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 6.8e-86 322.0 376 44.4
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 8.9e-86 321.6 416 44.2
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 8.9e-86 321.6 251 61.0
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 1.5e-85 320.9 257 59.1
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 3.4e-85 319.7 381 46.5
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 5.8e-85 318.9 387 45.5
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 7.6e-85 318.5 417 43.6
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.9e-84 316.6 248 60.5
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 4.9e-84 315.8 294 52.7
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 2.4e-83 313.5 418 43.8
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 4.2e-83 312.8 257 55.6
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 3.5e-82 309.7 302 52.6
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 1.3e-81 307.8 246 58.5
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 1.3e-81 307.8 309 52.4
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 3.9e-81 306.2 278 54.3
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 5.6e-80 302.4 381 44.9
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 2.8e-79 300.1 422 42.4
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 4.7e-79 299.3 380 44.2
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 1.4e-78 297.7 472 39.8
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.4e-75 287.7 225 59.6
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.9e-75 287.3 219 60.7
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 9.3e-75 285.0 345 46.7
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 6.9e-70 268.9 419 40.8
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 3.9e-65 253.1 388 39.9
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 7.1e-59 232.3 317 43.5
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 1.8e-57 227.6 276 48.6
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 6.2e-55 219.2 317 41.6
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.0e-52 211.8 142 66.9
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.9e-51 207.6 173 59.5
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 2.2e-47 194.1 158 58.2
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.2e-45 188.3 172 55.2
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 5.1e-41 172.9 152 53.9
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 2.4e-38 164.1 234 38.9
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 5.1e-33 146.4 153 50.3
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 8.8e-33 145.6 146 50.0
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 3.7e-31 140.2 301 33.9
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 1.7e-28 131.3 248 33.9
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 5.0e-28 129.8 85 68.2
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 3.6e-26 123.6 227 38.8
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 2.3e-25 120.9 136 50.0
MCO10G159 Micromonas commoda HOM05D004174 ORTHO05D004624 3.1e-22 110.5 361 26.9
BolC2t07007H Brassica oleracea HOM05D004174 ORTHO05D004624 1.0e-17 95.5 197 33.5
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 1.0e-17 95.5 215 31.2
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.0e-17 94.0 63 63.5
Cc11_g15180 Coffea canephora HOM05D004174 ORTHO05D004624 3.0e-17 94.0 96 47.9
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 4.0e-17 93.6 191 31.4
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 8.8e-17 92.4 63 61.9
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.5e-16 91.7 63 61.9
Cre13.g582476 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 1.0e-12 79.0 212 29.7
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 1.1e-11 75.5 49 77.6
SMO141G0190 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 4.7e-10 70.1 168 33.9
Lj4C460T3 Lonicera japonica HOM05D004174 ORTHO05D004624 2.3e-09 67.8 74 44.6
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 4.9e-07 60.1 148 32.4
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 4.1e-06 57.0 35 68.6


User provided reference genes

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