Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0103s0031 Marchantia polymorpha HOM05D007819 ORTHO05D009848 1.3e-182 642.9 318 100.0
PGR102G1079 Punica granatum HOM05D007819 ORTHO05D009848 2.5e-93 346.3 246 64.2
TWI75G0698 Tripterygium wilfordii HOM05D007819 ORTHO05D009848 2.5e-93 346.3 252 63.5
Oeu017391.1 Olea europaea HOM05D007819 ORTHO05D009848 4.3e-93 345.5 257 63.4
Nn2g10668 Nelumbo nucifera HOM05D007819 ORTHO05D009848 2.1e-92 343.2 258 62.4
FAN21G3467 Fragaria x ananassa HOM05D007819 ORTHO05D009848 3.7e-92 342.4 270 60.4
FAN25G2530 Fragaria x ananassa HOM05D007819 ORTHO05D009848 8.1e-92 341.3 271 60.5
RcHm_v2.0_Chr5g0060991 Rosa chinensis HOM05D007819 ORTHO05D009848 1.8e-91 340.1 262 61.8
TAR623G0280 Trochodendron aralioides HOM05D007819 ORTHO05D009848 3.1e-91 339.3 252 62.3
Sopen06g001100 Solanum pennellii HOM05D007819 ORTHO05D009848 4.0e-91 339.0 255 63.1
Cpa.g.sc318.6 Carica papaya HOM05D007819 ORTHO05D009848 6.9e-91 338.2 252 62.3
PSO339G1273 Papaver somniferum HOM05D007819 ORTHO05D009848 6.9e-91 338.2 267 59.6
Thecc.09G261200 Theobroma cacao HOM05D007819 ORTHO05D009848 1.5e-90 337.0 248 64.1
PSO384G2242 Papaver somniferum HOM05D007819 ORTHO05D009848 2.6e-90 336.3 267 59.6
CANSAT54G2163 Cannabis sativa HOM05D007819 ORTHO05D009848 3.4e-90 335.9 253 62.8
Atru.chr3.3713 Acer truncatum HOM05D007819 ORTHO05D009848 4.5e-90 335.5 282 57.8
Gohir.A09G105900 Gossypium hirsutum HOM05D007819 ORTHO05D009848 5.8e-90 335.1 252 62.3
Manes.04G025500 Manihot esculenta HOM05D007819 ORTHO05D009848 7.6e-90 334.7 252 62.3
Gorai.006G121000 Gossypium raimondii HOM05D007819 ORTHO05D009848 1.3e-89 334.0 252 61.9
Duzib168G1088 Durio zibethinus HOM05D007819 ORTHO05D009848 2.2e-89 333.2 267 59.9
Migut.N02626 Erythranthe guttata HOM05D007819 ORTHO05D009848 8.4e-89 331.3 252 62.7
Eucgr.B02464 Eucalyptus grandis HOM05D007819 ORTHO05D009848 1.1e-88 330.9 259 61.8
Gohir.D09G102600 Gossypium hirsutum HOM05D007819 ORTHO05D009848 1.9e-88 330.1 246 62.2
Cc01_g11630 Coffea canephora HOM05D007819 ORTHO05D009848 2.1e-87 326.6 242 63.6
COL.COLO4_25254 Corchorus olitorius HOM05D007819 ORTHO05D009848 3.5e-87 325.9 242 62.4
MD11G1124900 Malus domestica HOM05D007819 ORTHO05D009848 1.9e-85 320.1 244 62.7
Gohir.D05G077600 Gossypium hirsutum HOM05D007819 ORTHO05D009848 7.4e-85 318.2 252 59.9
Gorai.009G079100 Gossypium raimondii HOM05D007819 ORTHO05D009848 7.4e-85 318.2 252 59.9
Gohir.A05G074800 Gossypium hirsutum HOM05D007819 ORTHO05D009848 1.3e-84 317.4 252 59.5
Gohir.A05G074866 Gossypium hirsutum HOM05D007819 ORTHO05D009848 1.3e-84 317.4 252 59.5
Hma1.2p1_2033F.1_g311900 Hydrangea macrophylla HOM05D007819 ORTHO05D009848 2.8e-84 316.2 239 60.7
MD03G1111000 Malus domestica HOM05D007819 ORTHO05D009848 3.1e-83 312.8 271 57.2
FAN16G1444 Fragaria x ananassa HOM05D007819 ORTHO05D009848 6.9e-83 311.6 344 47.1
Lsat_1_v5_gn_2_25861 Lactuca sativa HOM05D007819 ORTHO05D009848 9.0e-83 311.2 239 61.9
CiPaw.14G077700 Carya illinoinensis HOM05D007819 ORTHO05D009848 1.2e-82 310.8 245 59.2
CiPaw.13G106200 Carya illinoinensis HOM05D007819 ORTHO05D009848 2.0e-82 310.1 252 57.1
Nitab4.5_0007369g0010 Nicotiana tabacum HOM05D007819 ORTHO05D009848 1.3e-81 307.4 279 53.4
Pp3c21_1570 Physcomitrium patens HOM05D007819 ORTHO05D009848 9.3e-80 301.2 255 60.0
Nitab4.5_0000888g0180 Nicotiana tabacum HOM05D007819 ORTHO05D009848 1.2e-79 300.8 272 52.9
QL01p036876 Quercus lobata HOM05D007819 ORTHO05D009848 1.6e-79 300.4 249 55.4
AUR62006507 Chenopodium quinoa HOM05D007819 ORTHO05D009848 1.9e-77 293.5 279 51.3
unitig_699.g19198 Utricularia gibba HOM05D007819 ORTHO05D009848 1.9e-77 293.5 256 55.5
CiPaw.13G106300 Carya illinoinensis HOM05D007819 ORTHO05D009848 4.3e-77 292.4 242 57.0
Lj1A183T52 Lonicera japonica HOM05D007819 ORTHO05D009848 2.2e-76 290.0 255 54.5
CiPaw.14G077600 Carya illinoinensis HOM05D007819 ORTHO05D009848 1.8e-75 287.0 256 52.0
FvH4_3g33520 Fragaria vesca HOM05D007819 ORTHO05D009848 2.0e-74 283.5 211 64.5
DCAR_005475 Daucus carota HOM05D007819 ORTHO05D009848 2.6e-74 283.1 218 60.1
Peaxi162Scf00389g00619 Petunia axillaris HOM05D007819 ORTHO05D009848 7.9e-71 271.6 233 56.7
Sc21g0003720 Simmondsia chinensis HOM05D007819 ORTHO05D009848 3.0e-70 269.6 211 61.1
Zm00001eb013150 Zea mays HOM05D007819 ORTHO05D009848 1.7e-68 263.8 256 50.0
HPP92_025075 Vanilla planifolia HOM05D007819 ORTHO05D009848 2.4e-67 260.0 251 48.6
Ciclev10029813m.g Citrus clementina HOM05D007819 ORTHO05D009848 4.2e-64 249.2 230 52.2
AagrBONN_evm.TU.Sc2ySwM_344.1297 Anthoceros agrestis HOM05D007819 ORTHO05D009848 6.7e-62 241.9 278 47.5
AagrBONN_evm.TU.Sc2ySwM_344.3840 Anthoceros agrestis HOM05D007819 ORTHO05D009848 9.7e-61 238.0 254 47.6
Haze_23935 Corylus avellana HOM05D007819 ORTHO05D009848 9.7e-61 238.0 205 57.6
Mapoly0035s0019 Marchantia polymorpha HOM05D007819 ORTHO05D009848 2.8e-60 236.5 254 48.8
Mapoly0008s0213 Marchantia polymorpha HOM05D007819 ORTHO05D009848 3.7e-60 236.1 254 47.2
Pp3c15_22830 Physcomitrium patens HOM05D007819 ORTHO05D009848 1.1e-59 234.6 306 42.5
Pp3c9_23950 Physcomitrium patens HOM05D007819 ORTHO05D009848 1.1e-59 234.6 254 47.2
SGA_v2.0_scaffold2G00920 Striga asiatica HOM05D007819 ORTHO05D009848 1.2e-58 231.1 227 50.7
Mapoly0155s0016 Marchantia polymorpha HOM05D007819 ORTHO05D009848 2.0e-58 230.3 254 46.5
Nitab4.5_0000022g0250 Nicotiana tabacum HOM05D007819 ORTHO05D009848 3.5e-58 229.6 211 55.5
Nitab4.5_0001578g0010 Nicotiana tabacum HOM05D007819 ORTHO05D009848 3.8e-57 226.1 246 46.7
Prupe.6G093600 Prunus persica HOM05D007819 ORTHO05D009848 1.1e-56 224.6 169 62.1
CAN.G1171.1 Capsicum annuum HOM05D007819 ORTHO05D009848 3.6e-55 219.5 224 49.6
Solyc06g005100.3 Solanum lycopersicum HOM05D007819 ORTHO05D009848 1.1e-53 214.5 172 58.1
Dinv32800 Davidia involucrata HOM05D007819 ORTHO05D009848 2.2e-52 210.3 187 55.1
GSVIVG01025124001 Vitis vinifera HOM05D007819 ORTHO05D009848 2.0e-50 203.8 150 61.3
MSTRG.12613 Avicennia marina HOM05D007819 ORTHO05D009848 4.5e-50 202.6 149 61.7
AUR62025022 Chenopodium quinoa HOM05D007819 ORTHO05D009848 2.9e-49 199.9 208 51.0
Pp3c3_24540 Physcomitrium patens HOM05D007819 ORTHO05D009848 4.0e-46 189.5 319 33.9
PGSC0003DMG401025397 Solanum tuberosum HOM05D007819 ORTHO05D009848 1.5e-45 187.6 155 57.4
Pp3c12_18930 Physcomitrium patens HOM05D000370 ORTHO05D009848 5.7e-45 185.7 289 35.6
Pp3c12_18938 Physcomitrium patens HOM05D000370 ORTHO05D009848 5.7e-45 185.7 289 35.6
Mapoly0088s0067 Marchantia polymorpha HOM05D000370 ORTHO05D001335 4.8e-44 182.6 260 36.5
Migut.O00707 Erythranthe guttata HOM05D007819 ORTHO05D009848 2.9e-41 173.3 115 65.2
EL10Ac9g22426 Beta vulgaris HOM05D007819 ORTHO05D009848 4.4e-37 159.5 137 54.0
MSTRG.12612 Avicennia marina HOM05D007819 ORTHO05D009848 1.5e-32 144.4 96 69.8
SalBow3G4000 Salvia bowleyana HOM05D007819 ORTHO05D009848 1.6e-31 141.0 96 66.7
QL01p036758 Quercus lobata HOM05D007819 ORTHO05D009848 9.2e-27 125.2 93 59.1
CSS0001112 Camellia sinensis var. sinensis HOM05D007819 ORTHO05D009848 3.5e-26 123.2 96 62.5
CSS0025937 Camellia sinensis var. sinensis HOM05D007819 ORTHO05D009848 3.5e-26 123.2 96 62.5
Os03g0287100 Oryza sativa ssp. japonica HOM05D007819 ORTHO05D009848 3.3e-24 116.7 105 51.4
QL01p036766 Quercus lobata HOM05D007819 ORTHO05D009848 3.3e-24 116.7 86 59.3
Oeu012676.1 Olea europaea HOM05D007819 ORTHO05D009848 2.3e-22 110.5 73 65.8
FAN11G3664 Fragaria x ananassa HOM05D007819 ORTHO05D009848 4.6e-18 96.3 66 69.7
EL10Ac9g22427 Beta vulgaris HOM05D007819 ORTHO05D009848 1.0e-17 95.1 111 45.9
CiPaw.09G094500 Carya illinoinensis HOM05D007819 ORTHO05D009848 2.8e-07 60.5 44 59.1


User provided reference genes

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