Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0102s0038 Marchantia polymorpha HOM05D001772 ORTHO05D008903 5.3e-198 694.1 338 100.0
SEGI_01392 Sequoiadendron giganteum HOM05D001772 ORTHO05D008903 3.0e-100 369.4 338 53.8
Pp3c22_2040 Physcomitrium patens HOM05D001772 ORTHO05D008903 2.3e-92 343.2 339 52.2
Aqoxy7G00133 Aquilegia oxysepala HOM05D001772 ORTHO05D008903 3.9e-92 342.4 340 50.3
AagrBONN_evm.TU.Sc2ySwM_344.1652 Anthoceros agrestis HOM05D001772 ORTHO05D008903 1.1e-89 334.3 364 49.5
CSS0012714 Camellia sinensis var. sinensis HOM05D001772 ORTHO05D008903 8.9e-89 331.3 340 49.1
Manes.05G024600 Manihot esculenta HOM05D001772 ORTHO05D008903 1.2e-88 330.9 340 49.7
vmacro13174 Vaccinium macrocarpon HOM05D001772 ORTHO05D008903 1.2e-88 330.9 341 48.7
CAN.G239.5 Capsicum annuum HOM05D001772 ORTHO05D008903 3.4e-88 329.3 340 50.0
arahy.Tifrunner.gnm1.ann1.NY4TXX Arachis hypogaea HOM05D001772 ORTHO05D008903 5.8e-88 328.6 342 48.8
PSO135G0498 Papaver somniferum HOM05D001772 ORTHO05D008903 5.8e-88 328.6 339 49.6
Sopen05g028720 Solanum pennellii HOM05D001772 ORTHO05D008903 7.6e-88 328.2 344 49.4
VMungo0540G0918 Vigna mungo HOM05D001772 ORTHO05D008903 1.3e-87 327.4 341 49.0
Lalb_Chr04g0261581 Lupinus albus HOM05D001772 ORTHO05D008903 1.7e-87 327.0 340 48.2
PGSC0003DMG402033880 Solanum tuberosum HOM05D001772 ORTHO05D008903 1.7e-87 327.0 340 50.0
Migut.N01555 Erythranthe guttata HOM05D001772 ORTHO05D008903 2.2e-87 326.6 340 49.4
PSO384G4631 Papaver somniferum HOM05D001772 ORTHO05D008903 2.2e-87 326.6 338 49.4
arahy.Tifrunner.gnm1.ann1.HV5NER Arachis hypogaea HOM05D001772 ORTHO05D008903 2.9e-87 326.2 342 48.8
MD07G1147600 Malus domestica HOM05D001772 ORTHO05D008903 2.9e-87 326.2 340 49.1
Phvul.006G111900 Phaseolus vulgaris HOM05D001772 ORTHO05D008903 2.9e-87 326.2 341 49.0
RcHm_v2.0_Chr1g0359211 Rosa chinensis HOM05D001772 ORTHO05D008903 2.9e-87 326.2 340 49.7
FvH4_7g16200 Fragaria vesca HOM05D001772 ORTHO05D008903 6.4e-87 325.1 340 48.8
Potri.014G096700 Populus trichocarpa HOM05D001772 ORTHO05D008903 6.4e-87 325.1 341 49.0
Lj9A595T55 Lonicera japonica HOM05D001772 ORTHO05D008903 8.4e-87 324.7 340 48.5
TAR375G0197 Trochodendron aralioides HOM05D001772 ORTHO05D008903 1.1e-86 324.3 340 47.9
Dinv18731 Davidia involucrata HOM05D001772 ORTHO05D008903 1.4e-86 323.9 339 49.0
FAN03G0169 Fragaria x ananassa HOM05D001772 ORTHO05D008903 1.4e-86 323.9 339 48.1
QL04p013773 Quercus lobata HOM05D001772 ORTHO05D008903 2.4e-86 323.2 340 47.9
Psat2g145680 Pisum sativum HOM05D001772 ORTHO05D008903 3.2e-86 322.8 340 47.9
Duzib138G1524 Durio zibethinus HOM05D001772 ORTHO05D008903 7.1e-86 321.6 340 47.6
SMO167G0031 Selaginella moellendorffii HOM05D001772 ORTHO05D008903 7.1e-86 321.6 338 49.4
SMO347G0199 Selaginella moellendorffii HOM05D001772 ORTHO05D008903 7.1e-86 321.6 339 49.6
Medtr5g025480 Medicago truncatula HOM05D001772 ORTHO05D008903 1.2e-85 320.9 340 47.1
Ciclev10020231m.g Citrus clementina HOM05D001772 ORTHO05D008903 1.6e-85 320.5 340 49.7
Eucgr.E00067 Eucalyptus grandis HOM05D001772 ORTHO05D008903 1.6e-85 320.5 338 47.0
Aa31LG5G920 Aethionema arabicum HOM05D001772 ORTHO05D008903 2.1e-85 320.1 340 47.1
Atru.chr5.644 Acer truncatum HOM05D001772 ORTHO05D008903 2.7e-85 319.7 342 47.7
CARHR249250 Cardamine hirsuta HOM05D001772 ORTHO05D008903 2.7e-85 319.7 342 47.7
Prupe.2G185600 Prunus persica HOM05D001772 ORTHO05D008903 2.7e-85 319.7 340 47.4
TPR.G8988 Trifolium pratense HOM05D001772 ORTHO05D008903 2.7e-85 319.7 340 47.4
Sc01g0002840 Simmondsia chinensis HOM05D001772 ORTHO05D008903 3.5e-85 319.3 339 48.1
FAN01G1646 Fragaria x ananassa HOM05D001772 ORTHO05D008903 6.0e-85 318.5 338 47.6
PGR042G2345 Punica granatum HOM05D001772 ORTHO05D008903 6.0e-85 318.5 340 48.8
AT4G01040 Arabidopsis thaliana HOM05D001772 ORTHO05D008903 7.8e-85 318.2 341 48.1
FAN10G2954 Fragaria x ananassa HOM05D001772 ORTHO05D008903 7.8e-85 318.2 339 48.1
Sed0004684 Sechium edule HOM05D001772 ORTHO05D008903 1.0e-84 317.8 338 49.7
GSVIVG01027076001 Vitis vinifera HOM05D001772 ORTHO05D008903 1.0e-84 317.8 340 48.8
Carub.0006s3610 Capsella rubella HOM05D001772 ORTHO05D008903 1.7e-84 317.0 341 47.5
CsaV3_3G008150 Cucumis sativus L. HOM05D001772 ORTHO05D008903 1.7e-84 317.0 338 49.7
Thhalv10028671m.g Eutrema salsugineum HOM05D001772 ORTHO05D008903 3.0e-84 316.2 341 46.0
Rhsim07G0005700 Rhododendron simsii HOM05D001772 ORTHO05D008903 5.1e-84 315.5 341 46.6
THA.LOC104825876 Tarenaya hassleriana HOM05D001772 ORTHO05D008903 5.1e-84 315.5 336 47.0
Ca_25036_v3 Cicer arietinum L. HOM05D001772 ORTHO05D008903 6.6e-84 315.1 340 46.8
Cc02_g39160 Coffea canephora HOM05D001772 ORTHO05D008903 8.7e-84 314.7 341 46.3
Nitab4.5_0000258g0130 Nicotiana tabacum HOM05D001772 ORTHO05D008903 1.1e-83 314.3 330 49.4
Solyc05g050320.4 Solanum lycopersicum HOM05D001772 ORTHO05D008903 1.1e-83 314.3 330 48.5
Gohir.A12G111500 Gossypium hirsutum HOM05D001772 ORTHO05D008903 1.5e-83 313.9 344 47.1
Gohir.D12G114800 Gossypium hirsutum HOM05D001772 ORTHO05D008903 1.5e-83 313.9 344 47.1
FAN06G2365 Fragaria x ananassa HOM05D001772 ORTHO05D008903 1.9e-83 313.5 334 47.9
Sabra14G0070800 Salix brachista HOM05D001772 ORTHO05D008903 2.5e-83 313.2 331 48.9
Gorai.008G124300 Gossypium raimondii HOM05D001772 ORTHO05D008903 3.3e-83 312.8 344 46.8
MD01G1078600 Malus domestica HOM05D001772 ORTHO05D008903 3.3e-83 312.8 340 47.4
TWI59G0809 Tripterygium wilfordii HOM05D001772 ORTHO05D008903 4.3e-83 312.4 340 48.8
ClCG05G000920 Citrullus lanatus HOM05D001772 ORTHO05D008903 5.6e-83 312.0 338 48.2
CANSAT56G1679 Cannabis sativa HOM05D001772 ORTHO05D008903 9.6e-83 311.2 345 46.7
AUR62023481 Chenopodium quinoa HOM05D001772 ORTHO05D008903 9.6e-83 311.2 342 45.6
AUR62004469 Chenopodium quinoa HOM05D001772 ORTHO05D008903 1.6e-82 310.5 342 45.6
Sp6g01100 Schrenkiella parvula HOM05D001772 ORTHO05D008903 2.1e-82 310.1 338 46.4
Thecc.01G344900 Theobroma cacao HOM05D001772 ORTHO05D008903 4.8e-82 308.9 348 45.7
FAN06G4998 Fragaria x ananassa HOM05D001772 ORTHO05D008903 8.1e-82 308.1 330 47.9
COL.COLO4_06307 Corchorus olitorius HOM05D001772 ORTHO05D008903 1.1e-81 307.8 344 46.5
Lsat_1_v5_gn_3_139600 Lactuca sativa HOM05D001772 ORTHO05D008903 2.4e-81 306.6 341 46.6
SGA_v2.0_scaffold11G05728 Striga asiatica HOM05D001772 ORTHO05D008903 3.1e-81 306.2 340 46.5
EL10Ac1g00295 Beta vulgaris HOM05D001772 ORTHO05D008903 6.9e-81 305.1 340 45.9
MBI06_g46729_MAGBIO Magnolia biondii HOM05D001772 ORTHO05D008903 1.2e-80 304.3 373 44.2
Peaxi162Scf00403g00519 Petunia axillaris HOM05D001772 ORTHO05D008903 1.2e-80 304.3 330 47.6
Nn3g19051 Nelumbo nucifera HOM05D001772 ORTHO05D008903 1.5e-80 303.9 335 46.9
Glyma.03G256800 Glycine max HOM05D001772 ORTHO05D008903 2.6e-80 303.1 331 47.7
Lj1g0009750 Lotus japonicus HOM05D001772 ORTHO05D008903 2.6e-80 303.1 330 47.0
CDE10G0091 Ceratophyllum demersum HOM05D001772 ORTHO05D008903 7.6e-80 301.6 341 46.6
HanXRQChr11g0353031 Helianthus annuus HOM05D001772 ORTHO05D008903 2.2e-79 300.1 340 45.9
Oeu007903.1 Olea europaea HOM05D001772 ORTHO05D008903 2.2e-79 300.1 338 44.1
Zm00001eb358410 Zea mays HOM05D001772 ORTHO05D008903 2.2e-79 300.1 340 47.1
SalBow5G1378 Salvia bowleyana HOM05D001772 ORTHO05D008903 2.9e-79 299.7 367 44.7
Cfa003819 Carpinus fangiana HOM05D001772 ORTHO05D008903 8.4e-79 298.1 332 47.0
CANSAT56G1036 Cannabis sativa HOM05D001772 ORTHO05D008903 1.9e-78 297.0 333 46.5
A03p31810 Brassica napus HOM05D001772 ORTHO05D008903 1.6e-77 293.9 331 45.6
BcaC01g06839 Brassica carinata HOM05D001772 ORTHO05D008903 2.7e-77 293.1 332 45.2
BraA03t12356Z Brassica rapa HOM05D001772 ORTHO05D008903 4.6e-77 292.4 331 45.6
C03p38820 Brassica napus HOM05D001772 ORTHO05D008903 7.9e-77 291.6 331 45.3
BolC3t16157H Brassica oleracea HOM05D001772 ORTHO05D008903 7.9e-77 291.6 331 45.3
Ah.05g179760 Amaranthus hybridus HOM05D001772 ORTHO05D008903 1.3e-76 290.8 338 42.9
Hund27212 Selenicereus undatus HOM05D001772 ORTHO05D008903 1.5e-75 287.3 378 41.0
ECA240G4072 Erigeron canadensis HOM05D001772 ORTHO05D008903 3.3e-75 286.2 331 45.9
Haze_15635 Corylus avellana HOM05D001772 ORTHO05D008903 9.6e-75 284.6 354 44.1
MELO3C006034.2 Cucumis melo HOM05D001772 ORTHO05D008903 2.8e-74 283.1 315 48.3
BcaB01g02345 Brassica carinata HOM05D001772 ORTHO05D008903 6.2e-74 282.0 331 44.4
HPP92_005515 Vanilla planifolia HOM05D001772 ORTHO05D008903 2.9e-71 273.1 330 42.1
CSS0002891 Camellia sinensis var. sinensis HOM05D001772 ORTHO05D008903 5.5e-70 268.9 305 45.2
DCAR_005380 Daucus carota HOM05D001772 ORTHO05D008903 1.2e-69 267.7 430 36.7
CBR_g3968 Chara braunii HOM05D001772 ORTHO05D008903 7.4e-67 258.5 359 38.2
AL6G52340 Arabidopsis lyrata HOM05D001772 ORTHO05D008903 3.9e-60 236.1 279 45.2
Cpa.g.sc273.9 Carica papaya HOM05D001772 ORTHO05D008903 2.2e-55 220.3 249 44.6
Cre03.g200650 Chlamydomonas reinhardtii HOM05D001772 ORTHO05D008903 3.7e-50 203.0 347 34.3
Nitab4.5_0004506g0060 Nicotiana tabacum HOM05D001772 ORTHO05D008903 1.7e-42 177.6 328 34.1
ATR0589G019 Amborella trichopoda HOM05D001772 ORTHO05D008903 9.4e-38 161.8 201 44.3
Actinidia10113 Actinidia chinensis HOM05D001772 ORTHO05D008903 1.1e-35 154.8 145 49.0
CiPaw.01G074400 Carya illinoinensis HOM05D001772 ORTHO05D008903 7.5e-27 125.6 109 49.5
Nitab4.5_0015177g0010 Nicotiana tabacum HOM05D001772 ORTHO05D000634 5.4e-17 92.8 142 38.0
Os01g0619800 Oryza sativa ssp. japonica HOM05D001772 ORTHO05D008903 2.7e-16 90.5 80 51.2
Zm00001eb297790 Zea mays HOM05D001772 ORTHO05D023027 1.9e-14 84.3 134 38.1
Nitab4.5_0015177g0020 Nicotiana tabacum HOM05D001772 ORTHO05D008903 2.7e-08 63.9 47 57.4
Glyma.19G255000 Glycine max HOM05D001772 ORTHO05D008903 3.5e-08 63.5 77 41.6


User provided reference genes

Program Settings