Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0102s0009 Marchantia polymorpha HOM05D004171 ORTHO05D004983 5.5e-170 600.9 309 100.0
SMO116G0055 Selaginella moellendorffii HOM05D004171 ORTHO05D004983 7.7e-87 324.7 237 62.0
Actinidia05147 Actinidia chinensis HOM05D004171 ORTHO05D004983 2.1e-76 290.0 240 55.4
ATR0693G292 Amborella trichopoda HOM05D004171 ORTHO05D004983 2.3e-75 286.6 268 51.1
Glyma.12G218800 Glycine max HOM05D004171 ORTHO05D004983 8.8e-75 284.6 260 52.3
Actinidia09971 Actinidia chinensis HOM05D004171 ORTHO05D004983 1.1e-74 284.3 278 51.4
CSS0009250 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 5.7e-74 282.0 277 50.2
Glyma.12G134300 Glycine max HOM05D004171 ORTHO05D004983 7.4e-74 281.6 240 54.6
Pp3c3_11900 Physcomitrium patens HOM05D004171 ORTHO05D004983 7.4e-74 281.6 272 48.9
Phvul.011G138400 Phaseolus vulgaris HOM05D004171 ORTHO05D004983 1.3e-73 280.8 277 48.0
PSO541G5656 Papaver somniferum HOM05D004171 ORTHO05D004983 1.7e-73 280.4 240 52.9
Lj3g0003583 Lotus japonicus HOM05D004171 ORTHO05D004983 2.8e-73 279.6 264 50.4
Cfa020499 Carpinus fangiana HOM05D004171 ORTHO05D004983 4.8e-73 278.9 265 50.9
VMungo1127G0586 Vigna mungo HOM05D004171 ORTHO05D004983 4.8e-73 278.9 277 47.7
PSO675G0635 Papaver somniferum HOM05D004171 ORTHO05D004983 8.2e-73 278.1 240 52.1
Dinv08350 Davidia involucrata HOM05D004171 ORTHO05D004983 1.4e-72 277.3 258 50.8
Haze_09543 Corylus avellana HOM05D004171 ORTHO05D004983 1.8e-72 276.9 268 50.4
MD11G1235500 Malus domestica HOM05D004171 ORTHO05D004983 2.4e-72 276.6 256 48.8
MBI02_g13230_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 3.1e-72 276.2 240 53.3
SEGI_27365 Sequoiadendron giganteum HOM05D004171 ORTHO05D004983 3.1e-72 276.2 241 57.7
Duzib213G0518 Durio zibethinus HOM05D004171 ORTHO05D004983 5.3e-72 275.4 274 48.2
TAR627G1073 Trochodendron aralioides HOM05D004171 ORTHO05D004983 9.1e-72 274.6 240 52.5
Hma1.2p1_1176F.1_g264170 Hydrangea macrophylla HOM05D004171 ORTHO05D004983 1.6e-71 273.9 239 53.1
Medtr8g464760 Medicago truncatula HOM05D004171 ORTHO05D004983 1.6e-71 273.9 240 53.3
VMungo1080G1500 Vigna mungo HOM05D004171 ORTHO05D004983 1.6e-71 273.9 240 52.9
MD03G1217700 Malus domestica HOM05D004171 ORTHO05D004983 2.0e-71 273.5 275 47.6
Prupe.4G191500 Prunus persica HOM05D004171 ORTHO05D004983 2.0e-71 273.5 238 51.3
Psat4g140880 Pisum sativum HOM05D004171 ORTHO05D004983 3.5e-71 272.7 240 52.1
arahy.Tifrunner.gnm1.ann1.H2QIWP Arachis hypogaea HOM05D004171 ORTHO05D004983 4.5e-71 272.3 266 49.6
arahy.Tifrunner.gnm1.ann1.UD3S3B Arachis hypogaea HOM05D004171 ORTHO05D004983 4.5e-71 272.3 266 49.6
COL.COLO4_09488 Corchorus olitorius HOM05D004171 ORTHO05D004983 4.5e-71 272.3 274 47.4
Rhsim06G0192400 Rhododendron simsii HOM05D004171 ORTHO05D004983 5.9e-71 271.9 274 50.4
THA.LOC104799905 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 5.9e-71 271.9 246 50.4
vmacro11810 Vaccinium macrocarpon HOM05D004171 ORTHO05D004983 5.9e-71 271.9 236 53.0
Dinv22359 Davidia involucrata HOM05D004171 ORTHO05D004983 7.7e-71 271.6 277 49.5
Lalb_Chr01g0017051 Lupinus albus HOM05D004171 ORTHO05D004983 7.7e-71 271.6 241 51.0
Nitab4.5_0000297g0160 Nicotiana tabacum HOM05D004171 ORTHO05D004983 7.7e-71 271.6 277 49.1
Ah.04g165380 Amaranthus hybridus HOM05D004171 ORTHO05D004983 1.0e-70 271.2 240 51.7
Duzib268G0239 Durio zibethinus HOM05D004171 ORTHO05D004983 1.3e-70 270.8 277 49.5
Cpa.g.sc12.36 Carica papaya HOM05D004171 ORTHO05D004983 1.7e-70 270.4 244 50.8
Eucgr.F03360 Eucalyptus grandis HOM05D004171 ORTHO05D004983 1.7e-70 270.4 240 54.2
Sabra11G0111100 Salix brachista HOM05D004171 ORTHO05D004983 1.7e-70 270.4 278 48.2
Aqoxy1G02716 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 2.2e-70 270.0 274 46.7
arahy.Tifrunner.gnm1.ann1.EUN1K4 Arachis hypogaea HOM05D004171 ORTHO05D004983 2.2e-70 270.0 250 50.0
arahy.Tifrunner.gnm1.ann1.SXKR4Z Arachis hypogaea HOM05D004171 ORTHO05D004983 2.2e-70 270.0 267 47.6
TAR629G3225 Trochodendron aralioides HOM05D004171 ORTHO05D004983 2.2e-70 270.0 240 52.9
Peaxi162Scf01216g00047 Petunia axillaris HOM05D004171 ORTHO05D004983 2.9e-70 269.6 277 48.0
Manes.15G082500 Manihot esculenta HOM05D004171 ORTHO05D004983 3.8e-70 269.2 287 48.1
Nitab4.5_0009110g0010 Nicotiana tabacum HOM05D004171 ORTHO05D004983 3.8e-70 269.2 270 49.6
CSS0026220 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 8.5e-70 268.1 263 49.0
Cc05_g12750 Coffea canephora HOM05D004171 ORTHO05D004983 1.5e-69 267.3 275 50.2
Duzib170G1088 Durio zibethinus HOM05D004171 ORTHO05D004983 1.5e-69 267.3 270 47.0
RcHm_v2.0_Chr5g0036121 Rosa chinensis HOM05D004171 ORTHO05D004983 1.5e-69 267.3 274 47.4
THA.LOC104813397 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 1.9e-69 266.9 245 49.8
TPR.G25226 Trifolium pratense HOM05D004171 ORTHO05D004983 2.5e-69 266.5 249 49.8
Aa31LG3G10200 Aethionema arabicum HOM05D004171 ORTHO05D004983 3.2e-69 266.2 262 48.1
Potri.011G126300 Populus trichocarpa HOM05D004171 ORTHO05D004983 3.2e-69 266.2 278 46.4
Thecc.07G070400 Theobroma cacao HOM05D004171 ORTHO05D004983 3.2e-69 266.2 274 46.7
Gorai.009G430400 Gossypium raimondii HOM05D004171 ORTHO05D004983 4.2e-69 265.8 269 48.0
Gohir.D05G362300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 5.5e-69 265.4 269 48.0
PGR083G0998 Punica granatum HOM05D004171 ORTHO05D004983 5.5e-69 265.4 272 48.5
QL08p017518 Quercus lobata HOM05D004171 ORTHO05D004983 7.2e-69 265.0 239 50.6
MSTRG.14383 Avicennia marina HOM05D004171 ORTHO05D004983 9.4e-69 264.6 274 48.5
MBI18_g19831_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 9.4e-69 264.6 249 50.6
BcaC04g20360 Brassica carinata HOM05D004171 ORTHO05D004983 1.2e-68 264.2 246 50.4
BolC9t57324H Brassica oleracea HOM05D004171 ORTHO05D004983 1.2e-68 264.2 246 50.4
Gohir.A04G025600 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.2e-68 264.2 269 48.3
GSVIVG01014444001 Vitis vinifera HOM05D004171 ORTHO05D004983 1.2e-68 264.2 274 47.4
BraA02t06113Z Brassica rapa HOM05D004171 ORTHO05D004983 1.6e-68 263.8 246 49.2
BcaB05g22115 Brassica carinata HOM05D004171 ORTHO05D004983 2.1e-68 263.5 246 49.2
Migut.H01900 Erythranthe guttata HOM05D004171 ORTHO05D004983 2.1e-68 263.5 240 51.7
Gohir.D13G148000 Gossypium hirsutum HOM05D004171 ORTHO05D004983 2.1e-68 263.5 245 48.6
Gorai.013G165800 Gossypium raimondii HOM05D004171 ORTHO05D004983 2.1e-68 263.5 245 48.6
C09p44520 Brassica napus HOM05D004171 ORTHO05D004983 2.7e-68 263.1 246 50.0
BraA10t43247Z Brassica rapa HOM05D004171 ORTHO05D004983 2.7e-68 263.1 246 50.0
CAN.G162.108 Capsicum annuum HOM05D004171 ORTHO05D004983 2.7e-68 263.1 240 52.1
CARHR267500 Cardamine hirsuta HOM05D004171 ORTHO05D004983 2.7e-68 263.1 247 49.4
CiPaw.11G177500 Carya illinoinensis HOM05D004171 ORTHO05D004983 2.7e-68 263.1 282 45.7
Thhalv10025946m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 2.7e-68 263.1 281 46.3
TWI38G2120 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 2.7e-68 263.1 240 51.2
Manes.03G117000 Manihot esculenta HOM05D004171 ORTHO05D004983 3.6e-68 262.7 254 47.2
AL7G25450 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 4.7e-68 262.3 247 49.8
MSTRG.12927 Avicennia marina HOM05D004171 ORTHO05D004983 4.7e-68 262.3 240 50.8
A02p10500 Brassica napus HOM05D004171 ORTHO05D004983 4.7e-68 262.3 246 48.8
Thhalv10014333m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 4.7e-68 262.3 246 48.8
Gohir.A13G143300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 4.7e-68 262.3 245 49.0
Sp6g16280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 4.7e-68 262.3 246 49.2
PGR031G0147 Punica granatum HOM05D004171 ORTHO05D004983 6.1e-68 261.9 240 51.7
Sopen07g031800 Solanum pennellii HOM05D004171 ORTHO05D004983 6.1e-68 261.9 240 51.7
Atru.chr2.2929 Acer truncatum HOM05D004171 ORTHO05D004983 8.0e-68 261.5 276 46.0
CiPaw.12G123300 Carya illinoinensis HOM05D004171 ORTHO05D004983 8.0e-68 261.5 277 44.8
AT4G27350 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 1.0e-67 261.2 247 49.4
A10p11530 Brassica napus HOM05D004171 ORTHO05D004983 1.0e-67 261.2 246 50.0
AT5G54240 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 1.4e-67 260.8 245 49.4
BcaB08g35778 Brassica carinata HOM05D004171 ORTHO05D004983 1.4e-67 260.8 246 49.2
ClCG11G018550 Citrullus lanatus HOM05D004171 ORTHO05D004983 1.4e-67 260.8 270 47.4
TWI39G0675 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 1.8e-67 260.4 239 51.5
BcaC09g50581 Brassica carinata HOM05D004171 ORTHO05D004983 2.3e-67 260.0 250 49.6
BolC1t02294H Brassica oleracea HOM05D004171 ORTHO05D004983 2.3e-67 260.0 250 49.6
Carub.0007s1352 Capsella rubella HOM05D004171 ORTHO05D004983 2.3e-67 260.0 247 49.4
CsaV3_3G044320 Cucumis sativus L. HOM05D004171 ORTHO05D004983 2.3e-67 260.0 238 50.8
MELO3C018184.2 Cucumis melo HOM05D004171 ORTHO05D004983 3.0e-67 259.6 238 50.8
AUR62029303 Chenopodium quinoa HOM05D004171 ORTHO05D004983 4.0e-67 259.2 274 43.1
AUR62015590 Chenopodium quinoa HOM05D004171 ORTHO05D004983 5.2e-67 258.8 274 43.4
Solyc07g063620.3 Solanum lycopersicum HOM05D004171 ORTHO05D004983 5.2e-67 258.8 269 47.2
BcaNung05200 Brassica carinata HOM05D004171 ORTHO05D004983 6.7e-67 258.5 250 49.2
C01p23480 Brassica napus HOM05D004171 ORTHO05D004983 6.7e-67 258.5 250 48.8
Eucgr.F01074 Eucalyptus grandis HOM05D004171 ORTHO05D004983 6.7e-67 258.5 272 47.4
Lj1A854T34 Lonicera japonica HOM05D004171 ORTHO05D004983 6.7e-67 258.5 257 47.9
PGSC0003DMG400019283 Solanum tuberosum HOM05D004171 ORTHO05D004983 6.7e-67 258.5 281 47.0
CARHR235000 Cardamine hirsuta HOM05D004171 ORTHO05D004983 8.8e-67 258.1 244 48.4
Sp7g25280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 2.0e-66 256.9 248 48.0
AL8G29560 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 2.6e-66 256.5 245 49.0
HPP92_012360 Vanilla planifolia HOM05D004171 ORTHO05D004983 2.6e-66 256.5 240 49.2
BcaNung03036 Brassica carinata HOM05D004171 ORTHO05D004983 3.3e-66 256.1 284 45.4
BcaNung05201 Brassica carinata HOM05D004171 ORTHO05D004983 3.3e-66 256.1 284 45.4
A01p18530 Brassica napus HOM05D004171 ORTHO05D004983 3.3e-66 256.1 249 48.6
BraA01t01802Z Brassica rapa HOM05D004171 ORTHO05D004983 3.3e-66 256.1 249 48.6
Ciclev10009152m.g Citrus clementina HOM05D004171 ORTHO05D004983 5.7e-66 255.4 272 47.4
SalBow7G4117 Salvia bowleyana HOM05D004171 ORTHO05D004983 7.5e-66 255.0 240 49.6
CANSAT11G0840 Cannabis sativa HOM05D004171 ORTHO05D004983 9.7e-66 254.6 240 50.0
Hund23371 Selenicereus undatus HOM05D004171 ORTHO05D004983 9.7e-66 254.6 240 48.8
Sed0003677 Sechium edule HOM05D004171 ORTHO05D004983 2.2e-65 253.4 240 48.8
Sc16g0006730 Simmondsia chinensis HOM05D004171 ORTHO05D004983 2.2e-65 253.4 236 51.7
HanXRQChr02g0031371 Helianthus annuus HOM05D004171 ORTHO05D004983 3.7e-65 252.7 284 44.4
EL10Ac4g08047 Beta vulgaris HOM05D004171 ORTHO05D004983 6.3e-65 251.9 303 42.2
Lsat_1_v5_gn_7_105981 Lactuca sativa HOM05D004171 ORTHO05D004983 8.2e-65 251.5 277 43.7
SGA_v2.0_scaffold9G04958 Striga asiatica HOM05D004171 ORTHO05D004983 8.2e-65 251.5 272 45.6
DCAR_009989 Daucus carota HOM05D004171 ORTHO05D004983 1.1e-64 251.1 240 49.2
FAN25G0362 Fragaria x ananassa HOM05D004171 ORTHO05D004983 1.1e-64 251.1 287 44.9
MBI18_g27681_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 1.4e-64 250.8 277 46.6
FAN11G0158 Fragaria x ananassa HOM05D004171 ORTHO05D004983 1.8e-64 250.4 287 44.9
Sed0025378 Sechium edule HOM05D004171 ORTHO05D004983 1.8e-64 250.4 240 50.4
FAN16G3093 Fragaria x ananassa HOM05D004171 ORTHO05D004983 4.1e-64 249.2 287 44.3
Oeu006766.1 Olea europaea HOM05D004171 ORTHO05D004983 5.3e-64 248.8 240 48.8
ECA236G3492 Erigeron canadensis HOM05D004171 ORTHO05D004983 9.1e-64 248.1 243 46.1
BcaC09g50583 Brassica carinata HOM05D002586 ORTHO05D007009 1.2e-63 247.7 231 51.1
Carub.0008s1458 Capsella rubella HOM05D004171 ORTHO05D004983 1.2e-63 247.7 268 45.1
Lalb_Chr19g0134521 Lupinus albus HOM05D004171 ORTHO05D004983 1.2e-63 247.7 278 43.5
FvH4_3g21110 Fragaria vesca HOM05D004171 ORTHO05D004983 2.7e-63 246.5 275 45.5
Aa31LG5G10160 Aethionema arabicum HOM05D002586 ORTHO05D007009 4.5e-63 245.7 261 45.6
unitig_699.g19211 Utricularia gibba HOM05D004171 ORTHO05D004983 7.7e-63 245.0 240 47.9
CDE02G1151 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 1.3e-62 244.2 269 45.4
Os07g0559400 Oryza sativa ssp. japonica HOM05D004171 ORTHO05D004983 7.2e-61 238.4 255 45.9
Zm00001eb324170 Zea mays HOM05D004171 ORTHO05D004983 2.1e-60 236.9 263 45.6
DCAR_008697 Daucus carota HOM05D004171 ORTHO05D004983 1.0e-59 234.6 240 47.1
Aqoxy1G03898 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 5.2e-59 232.3 227 49.3
FAN21G0927 Fragaria x ananassa HOM05D004171 ORTHO05D004983 2.0e-58 230.3 242 45.9
Gohir.A08G020900 Gossypium hirsutum HOM05D004171 ORTHO05D004983 2.0e-55 220.3 265 43.8
Gorai.004G029100 Gossypium raimondii HOM05D004171 ORTHO05D004983 3.5e-55 219.5 264 43.6
AagrBONN_evm.TU.Sc2ySwM_228.913 Anthoceros agrestis HOM05D004171 ORTHO05D004983 1.0e-54 218.0 204 50.0
CDE01G0586 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 1.0e-54 218.0 205 49.8
CAN.G847.1 Capsicum annuum HOM05D004171 ORTHO05D004983 4.0e-51 206.1 199 48.7
CBR_g24077 Chara braunii HOM05D004171 ORTHO05D004983 8.8e-51 204.9 247 40.5
Potri.001G408001 Populus trichocarpa HOM05D004171 ORTHO05D004983 1.3e-49 201.1 186 47.8
CAN.G187.6 Capsicum annuum HOM05D004171 ORTHO05D004983 4.7e-44 182.6 187 48.7
Nn1g03875 Nelumbo nucifera HOM05D004171 ORTHO05D004983 4.6e-39 166.0 184 46.2
CDE12G0832 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 4.9e-33 146.0 206 38.3
Oeu019367.1 Olea europaea HOM05D004171 ORTHO05D004983 1.9e-32 144.1 119 52.9
Ca_22993_v3 Cicer arietinum L. HOM05D004171 ORTHO05D004983 4.1e-32 142.9 122 51.6
Nn1g06780 Nelumbo nucifera HOM05D004171 ORTHO05D004983 9.2e-32 141.7 157 44.6
Gohir.D08G031500 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.4e-27 127.9 163 42.9
C02p17300 Brassica napus HOM05D004171 ORTHO05D004983 3.4e-26 123.2 98 55.1
BolC2t07830H Brassica oleracea HOM05D004171 ORTHO05D004983 3.4e-26 123.2 98 55.1
BolC2t07836H Brassica oleracea HOM05D004171 ORTHO05D004983 3.4e-26 123.2 98 55.1
CBR_g54085 Chara braunii HOM05D000019 ORTHO05D000002 9.8e-26 121.7 173 36.4
BcaNung05202 Brassica carinata HOM05D004171 ORTHO05D004983 5.1e-14 82.8 112 41.1
AL9U10820 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 1.9e-08 64.3 74 40.5
CDE05G1305 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 3.5e-07 60.1 171 28.1


User provided reference genes

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