Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0102s0003 Marchantia polymorpha HOM05D015517 ORTHO05D017295 2.4e-215 751.9 382 100.0
AagrBONN_evm.TU.Sc2ySwM_344.3546 Anthoceros agrestis HOM05D015517 ORTHO05D017295 1.7e-107 393.7 364 55.5
Pp3c20_17110 Physcomitrium patens HOM05D015517 ORTHO05D017295 1.0e-101 374.4 369 53.7
CBR_g49763 Chara braunii HOM05D015517 ORTHO05D017295 1.0e-96 357.8 394 47.5
CBR_g20049 Chara braunii HOM05D015517 ORTHO05D017295 8.0e-86 321.6 339 47.5
MCO05G533 Micromonas commoda HOM05D015517 ORTHO05D017295 2.3e-61 240.4 352 40.6
PRCOL_00006244 Prasinoderma coloniale HOM05D015517 ORTHO05D017295 2.7e-49 200.3 228 44.7
Cfa026510 Carpinus fangiana HOM05D015517 ORTHO05D017295 1.3e-30 138.3 325 29.2
Cfa023983 Carpinus fangiana HOM05D015517 ORTHO05D017295 3.5e-17 93.6 312 29.5
TWI79G0304 Tripterygium wilfordii HOM05D000495 ORTHO05D000357 1.3e-11 75.1 263 28.1
Cfa022226 Carpinus fangiana HOM05D000495 ORTHO05D000357 2.9e-11 73.9 260 26.9
HanXRQChr01g0026341 Helianthus annuus HOM05D000495 ORTHO05D000357 2.9e-11 73.9 303 25.7
SalBow6G2855 Salvia bowleyana HOM05D000495 ORTHO05D000357 1.4e-10 71.6 293 26.6
ECA238G0102 Erigeron canadensis HOM05D000495 ORTHO05D000357 1.9e-10 71.2 303 25.4
HPP92_011036 Vanilla planifolia HOM05D000495 ORTHO05D000357 1.9e-10 71.2 303 26.1
CDE10G0540 Ceratophyllum demersum HOM05D000495 ORTHO05D000357 2.5e-10 70.9 266 27.4
QL01p018719 Quercus lobata HOM05D000495 ORTHO05D000357 2.5e-10 70.9 260 26.9
QL07p018843 Quercus lobata HOM05D000495 ORTHO05D000357 2.5e-10 70.9 304 26.6
AUR62036281 Chenopodium quinoa HOM05D000495 ORTHO05D000357 3.2e-10 70.5 260 26.5
CsaV3_1G044830 Cucumis sativus L. HOM05D000495 ORTHO05D000357 5.5e-10 69.7 309 26.2
CSS0016696 Camellia sinensis var. sinensis HOM05D000495 ORTHO05D000357 7.2e-10 69.3 264 26.1
Haze_23624 Corylus avellana HOM05D000495 ORTHO05D000357 9.4e-10 68.9 247 26.7
Thhalv10015493m.g Eutrema salsugineum HOM05D000495 ORTHO05D000357 9.4e-10 68.9 239 27.2
FvH4_4g26180 Fragaria vesca HOM05D000495 ORTHO05D000357 9.4e-10 68.9 260 26.2
QL04p049742 Quercus lobata HOM05D000495 ORTHO05D000357 9.4e-10 68.9 244 27.0
Duzib168G2088 Durio zibethinus HOM05D000495 ORTHO05D000357 1.2e-09 68.6 293 27.0
Ciclev10028018m.g Citrus clementina HOM05D000495 ORTHO05D000357 1.6e-09 68.2 264 27.3
Thhalv10010219m.g Eutrema salsugineum HOM05D000495 ORTHO05D000357 1.6e-09 68.2 301 25.6
Lsat_1_v5_gn_2_103821 Lactuca sativa HOM05D000495 ORTHO05D000357 2.1e-09 67.8 244 27.5
Thecc.09G266700 Theobroma cacao HOM05D000495 ORTHO05D000357 2.1e-09 67.8 264 27.3
C03p71280 Brassica napus HOM05D000495 ORTHO05D000357 2.7e-09 67.4 301 25.9
AUR62039730 Chenopodium quinoa HOM05D000495 ORTHO05D000357 2.7e-09 67.4 260 26.5
Cc01_g08410 Coffea canephora HOM05D000495 ORTHO05D000357 2.7e-09 67.4 293 25.6
MELO3C017382.2 Cucumis melo HOM05D000495 ORTHO05D000357 2.7e-09 67.4 310 25.8
PGR119G0999 Punica granatum HOM05D000495 ORTHO05D000357 2.7e-09 67.4 260 26.5
MSTRG.18805 Avicennia marina HOM05D000495 ORTHO05D000357 3.6e-09 67.0 264 27.3
CiPaw.13G125000 Carya illinoinensis HOM05D000495 ORTHO05D000357 3.6e-09 67.0 264 26.1
Eucgr.J00604 Eucalyptus grandis HOM05D000495 ORTHO05D000357 3.6e-09 67.0 260 26.9
PGR042G1294 Punica granatum HOM05D000495 ORTHO05D000357 3.6e-09 67.0 307 26.1
Sed0013829 Sechium edule HOM05D000495 ORTHO05D000357 3.6e-09 67.0 262 27.1
Sc07g0007860 Simmondsia chinensis HOM05D000495 ORTHO05D000357 3.6e-09 67.0 263 28.5
Atru.chr3.3031 Acer truncatum HOM05D000495 ORTHO05D000357 4.6e-09 66.6 264 26.9
FAN07G0019 Fragaria x ananassa HOM05D000495 ORTHO05D000357 4.6e-09 66.6 249 25.7
Sed0015922 Sechium edule HOM05D000495 ORTHO05D000357 4.6e-09 66.6 260 26.9
Actinidia03951 Actinidia chinensis HOM05D000495 ORTHO05D000357 6.1e-09 66.2 262 27.1
AT5G04885 Arabidopsis thaliana HOM05D000495 ORTHO05D000357 6.1e-09 66.2 307 25.4
arahy.Tifrunner.gnm1.ann1.41CPL5 Arachis hypogaea HOM05D000495 ORTHO05D000357 6.1e-09 66.2 244 28.3
CANSAT54G2457 Cannabis sativa HOM05D000495 ORTHO05D000357 6.1e-09 66.2 262 27.9
Eucgr.G02657 Eucalyptus grandis HOM05D000495 ORTHO05D000357 6.1e-09 66.2 260 26.2
Lj2g0002572 Lotus japonicus HOM05D000495 ORTHO05D000357 6.1e-09 66.2 310 25.5
AL6G14560 Arabidopsis lyrata HOM05D000495 ORTHO05D000357 7.9e-09 65.9 307 25.1
EL10Ac5g11770 Beta vulgaris HOM05D000495 ORTHO05D000357 7.9e-09 65.9 290 26.9
HanXRQChr11g0347491 Helianthus annuus HOM05D000495 ORTHO05D000357 7.9e-09 65.9 300 26.3
PGR042G1452 Punica granatum HOM05D000495 ORTHO05D000357 7.9e-09 65.9 265 26.8
Dinv00088 Davidia involucrata HOM05D000495 ORTHO05D000357 1.0e-08 65.5 264 27.7
Oeu038471.1 Olea europaea HOM05D000495 ORTHO05D000357 1.0e-08 65.5 246 25.6
arahy.Tifrunner.gnm1.ann1.WZ5PI0 Arachis hypogaea HOM05D000495 ORTHO05D000357 1.4e-08 65.1 244 27.9
CDE10G0132 Ceratophyllum demersum HOM05D000495 ORTHO05D000357 1.4e-08 65.1 245 27.8
CsaV3_1G004550 Cucumis sativus L. HOM05D000495 ORTHO05D000357 1.4e-08 65.1 266 26.7
DCAR_020666 Daucus carota HOM05D000495 ORTHO05D000357 1.4e-08 65.1 293 26.6
Gohir.A05G076800 Gossypium hirsutum HOM05D000495 ORTHO05D000357 1.4e-08 65.1 263 26.2
HanXRQChr02g0033711 Helianthus annuus HOM05D000495 ORTHO05D000357 1.4e-08 65.1 256 26.2
PGR142G1145 Punica granatum HOM05D000495 ORTHO05D000357 1.4e-08 65.1 298 24.8
Cfa010464 Carpinus fangiana HOM05D000495 ORTHO05D000357 1.8e-08 64.7 264 26.5
HanXRQChr01g0026351 Helianthus annuus HOM05D000495 ORTHO05D000357 1.8e-08 64.7 264 25.4
Potri.009G153900 Populus trichocarpa HOM05D000495 ORTHO05D000357 1.8e-08 64.7 263 27.0
THA.LOC104810970 Tarenaya hassleriana HOM05D000495 ORTHO05D000357 1.8e-08 64.7 263 26.6
Zm00001eb208980 Zea mays HOM05D000495 ORTHO05D000357 1.8e-08 64.7 280 28.9
CiPaw.13G046200 Carya illinoinensis HOM05D000495 ORTHO05D000357 2.3e-08 64.3 260 26.5
CsaV3_1G044820 Cucumis sativus L. HOM05D000495 ORTHO05D000357 2.3e-08 64.3 245 27.3
PSO339G6179 Papaver somniferum HOM05D000495 ORTHO05D000357 2.3e-08 64.3 262 25.6
Hund15046 Selenicereus undatus HOM05D000495 ORTHO05D000357 2.3e-08 64.3 260 26.2
AL6G32510 Arabidopsis lyrata HOM05D000495 ORTHO05D000357 3.0e-08 63.9 263 25.5
EL10Ac8g20610 Beta vulgaris HOM05D000495 ORTHO05D000357 3.0e-08 63.9 263 25.9
Carub.0006s1926 Capsella rubella HOM05D000495 ORTHO05D000357 3.0e-08 63.9 263 26.2
Phvul.006G065600 Phaseolus vulgaris HOM05D000495 ORTHO05D000357 3.0e-08 63.9 299 23.7
Phvul.007G250300 Phaseolus vulgaris HOM05D000495 ORTHO05D000357 3.0e-08 63.9 260 25.4
PGR142G0023 Punica granatum HOM05D000495 ORTHO05D000357 3.0e-08 63.9 298 24.5
GSVIVG01037542001 Vitis vinifera HOM05D000495 ORTHO05D000357 3.0e-08 63.9 176 29.0
AT5G20940 Arabidopsis thaliana HOM05D000495 ORTHO05D000357 3.9e-08 63.5 263 26.2
Cpa.g.sc103.89 Carica papaya HOM05D000495 ORTHO05D000357 3.9e-08 63.5 266 27.1
CiPaw.10G126500 Carya illinoinensis HOM05D000495 ORTHO05D000357 3.9e-08 63.5 308 26.0
Haze_03418 Corylus avellana HOM05D000495 ORTHO05D000357 3.9e-08 63.5 273 26.7
Dinv32836 Davidia involucrata HOM05D000495 ORTHO05D000357 3.9e-08 63.5 262 26.0
Glyma.10G106600 Glycine max HOM05D000495 ORTHO05D000357 3.9e-08 63.5 260 25.4
HanXRQChr07g0197071 Helianthus annuus HOM05D000495 ORTHO05D000357 3.9e-08 63.5 264 25.4
Hund16406 Selenicereus undatus HOM05D000495 ORTHO05D000357 3.9e-08 63.5 179 28.5
PGSC0003DMG400003013 Solanum tuberosum HOM05D000495 ORTHO05D000357 3.9e-08 63.5 260 26.2
THA.LOC104810727 Tarenaya hassleriana HOM05D000495 ORTHO05D000357 3.9e-08 63.5 339 23.9
A03p01900 Brassica napus HOM05D000495 ORTHO05D000357 5.1e-08 63.2 305 23.9
BraA03t09560Z Brassica rapa HOM05D000495 ORTHO05D000357 5.1e-08 63.2 305 23.9
CAN.G439.6 Capsicum annuum HOM05D000495 ORTHO05D000357 5.1e-08 63.2 239 27.6
Cc01_g08380 Coffea canephora HOM05D000495 ORTHO05D000357 5.1e-08 63.2 267 26.6
Dinv25095 Davidia involucrata HOM05D000495 ORTHO05D000357 5.1e-08 63.2 264 27.3
Prupe.2G065700 Prunus persica HOM05D000495 ORTHO05D000357 5.1e-08 63.2 307 24.1
CARHR208390 Cardamine hirsuta HOM05D000495 ORTHO05D000357 6.7e-08 62.8 305 23.9
Ciclev10019305m.g Citrus clementina HOM05D000495 ORTHO05D000357 6.7e-08 62.8 260 25.8
Hma1.2p1_0127F.1_g059490 Hydrangea macrophylla HOM05D000495 ORTHO05D000357 6.7e-08 62.8 260 26.2
MD03G1161800 Malus domestica HOM05D000495 ORTHO05D000357 6.7e-08 62.8 263 28.5
PSO384G1522 Papaver somniferum HOM05D000495 ORTHO05D000357 8.8e-08 62.4 262 25.2
Pp3c26_8580 Physcomitrium patens HOM05D000495 ORTHO05D000357 8.8e-08 62.4 262 26.0
Gohir.D09G100600 Gossypium hirsutum HOM05D000495 ORTHO05D000357 1.1e-07 62.0 262 26.0
Gorai.006G118100 Gossypium raimondii HOM05D000495 ORTHO05D000357 1.1e-07 62.0 262 26.0
Prupe.6G150800 Prunus persica HOM05D000495 ORTHO05D000357 1.1e-07 62.0 263 27.8
Rhsim13G0072300 Rhododendron simsii HOM05D000495 ORTHO05D000357 1.1e-07 62.0 261 26.1
Sabra09G0121100 Salix brachista HOM05D000495 ORTHO05D000357 1.1e-07 62.0 255 27.1
Solyc11g071640.3 Solanum lycopersicum HOM05D000495 ORTHO05D000357 1.1e-07 62.0 262 26.0
Sopen11g029310 Solanum pennellii HOM05D000495 ORTHO05D000357 1.1e-07 62.0 262 26.0
Dinv25096 Davidia involucrata HOM05D000495 ORTHO05D000357 1.5e-07 61.6 265 25.7
Duzib177G0868 Durio zibethinus HOM05D000495 ORTHO05D000357 1.5e-07 61.6 266 26.7
Thhalv10012900m.g Eutrema salsugineum HOM05D000495 ORTHO05D000357 1.5e-07 61.6 305 23.6
Lj6g0001731 Lotus japonicus HOM05D000495 ORTHO05D000357 1.5e-07 61.6 264 25.8
Prupe.7G007200 Prunus persica HOM05D000495 ORTHO05D000357 1.5e-07 61.6 260 25.8
THA.LOC104803070 Tarenaya hassleriana HOM05D000495 ORTHO05D000357 2.0e-07 61.2 267 26.2
BcaB01g05920 Brassica carinata HOM05D000495 ORTHO05D000357 2.5e-07 60.8 305 23.9
BcaNung05154 Brassica carinata HOM05D000495 ORTHO05D000357 2.5e-07 60.8 305 23.9
C03p02270 Brassica napus HOM05D000495 ORTHO05D000357 2.5e-07 60.8 305 23.9
BolC3t12778H Brassica oleracea HOM05D000495 ORTHO05D000357 2.5e-07 60.8 305 23.9
Carub.0006s0380 Capsella rubella HOM05D000495 ORTHO05D000357 2.5e-07 60.8 305 23.9
CAN.G134.61 Capsicum annuum HOM05D000495 ORTHO05D000357 2.5e-07 60.8 301 24.6
FvH4_7g05220 Fragaria vesca HOM05D000495 ORTHO05D000357 2.5e-07 60.8 305 26.2
Gohir.A09G103900 Gossypium hirsutum HOM05D000495 ORTHO05D000357 2.5e-07 60.8 262 25.6
MD14G1004200 Malus domestica HOM05D000495 ORTHO05D000357 2.5e-07 60.8 308 26.0
Manes.08G146000 Manihot esculenta HOM05D000495 ORTHO05D000357 2.5e-07 60.8 260 25.8
Oeu058173.1 Olea europaea HOM05D000495 ORTHO05D000357 2.5e-07 60.8 242 26.9
FAN12G2227 Fragaria x ananassa HOM05D000495 ORTHO05D000357 3.3e-07 60.5 176 27.3
FAN12G3965 Fragaria x ananassa HOM05D000495 ORTHO05D000357 3.3e-07 60.5 176 27.3
MELO3C012319.2 Cucumis melo HOM05D000495 ORTHO05D000357 4.3e-07 60.1 263 26.2
Sp6g37940 Schrenkiella parvula HOM05D000495 ORTHO05D000357 4.3e-07 60.1 305 23.6
VMungo0540G1485 Vigna mungo HOM05D000495 ORTHO05D000357 4.3e-07 60.1 261 23.8
CAN.G65.224 Capsicum annuum HOM05D000495 ORTHO05D000357 5.7e-07 59.7 265 25.3
Manes.10G070500 Manihot esculenta HOM05D000495 ORTHO05D000357 5.7e-07 59.7 262 26.0
QL04p049778 Quercus lobata HOM05D000495 ORTHO05D000357 5.7e-07 59.7 251 25.1
VMungo0720G2971 Vigna mungo HOM05D000495 ORTHO05D000357 5.7e-07 59.7 260 25.4
Actinidia38757 Actinidia chinensis HOM05D000495 ORTHO05D000357 7.4e-07 59.3 260 25.0
Migut.J00757 Erythranthe guttata HOM05D000495 ORTHO05D000357 7.4e-07 59.3 305 24.6
Peaxi162Scf00217g00314 Petunia axillaris HOM05D000495 ORTHO05D000357 7.4e-07 59.3 240 27.5
Potri.008G013500 Populus trichocarpa HOM05D000495 ORTHO05D000357 7.4e-07 59.3 266 26.7
Rhsim04G0082300 Rhododendron simsii HOM05D000495 ORTHO05D000357 7.4e-07 59.3 242 26.9
vmacro00664 Vaccinium macrocarpon HOM05D000495 ORTHO05D000357 7.4e-07 59.3 288 24.3
FvH4_3g26961 Fragaria vesca HOM05D000495 ORTHO05D000357 9.7e-07 58.9 258 26.7
Sed0017235 Sechium edule HOM05D000495 ORTHO05D000357 9.7e-07 58.9 263 26.2
HanXRQChr01g0028251 Helianthus annuus HOM05D000495 ORTHO05D000357 1.3e-06 58.5 246 26.4
MD11G1178000 Malus domestica HOM05D000495 ORTHO05D000357 1.3e-06 58.5 263 27.0
Nitab4.5_0005439g0040 Nicotiana tabacum HOM05D000495 ORTHO05D000357 1.3e-06 58.5 250 26.8
TPR.G37706 Trifolium pratense HOM05D000495 ORTHO05D000357 1.3e-06 58.5 264 25.8
ClCG05G022080 Citrullus lanatus HOM05D000495 ORTHO05D000357 1.7e-06 58.2 244 25.0
Medtr6g028100 Medicago truncatula HOM05D000495 ORTHO05D000357 1.7e-06 58.2 264 24.6
RcHm_v2.0_Chr5g0049481 Rosa chinensis HOM05D000495 ORTHO05D000357 1.7e-06 58.2 258 26.7
MBI11_g25047_MAGBIO Magnolia biondii HOM05D000495 ORTHO05D000357 2.2e-06 57.8 262 25.6
Medtr3g079750 Medicago truncatula HOM05D000495 ORTHO05D000357 2.2e-06 57.8 264 25.4
Oeu031441.2 Olea europaea HOM05D000495 ORTHO05D000357 2.2e-06 57.8 251 25.1
Os01g0771900 Oryza sativa ssp. japonica HOM05D000495 ORTHO05D000357 2.8e-06 57.4 265 27.2
Peaxi162Scf00217g00313 Petunia axillaris HOM05D000495 ORTHO05D000357 2.8e-06 57.4 262 26.3
Sopen06g030150 Solanum pennellii HOM05D000495 ORTHO05D000357 2.8e-06 57.4 264 25.8
DCAR_013474 Daucus carota HOM05D000495 ORTHO05D000357 3.7e-06 57.0 176 29.0
Manes.09G139400 Manihot esculenta HOM05D000495 ORTHO05D000357 3.7e-06 57.0 262 25.6
Manes.S045616 Manihot esculenta HOM05D000495 ORTHO05D000357 3.7e-06 57.0 262 25.6
EL10Ac4g08751 Beta vulgaris HOM05D000495 ORTHO05D000357 4.8e-06 56.6 244 26.2
RhsimUnG0026000 Rhododendron simsii HOM05D000495 ORTHO05D000357 4.8e-06 56.6 285 24.9
Sc07g0007870 Simmondsia chinensis HOM05D000495 ORTHO05D000357 6.3e-06 56.2 268 26.9
Solyc06g073760.3 Solanum lycopersicum HOM05D000495 ORTHO05D000357 6.3e-06 56.2 264 25.4
vmacro04060 Vaccinium macrocarpon HOM05D000495 ORTHO05D000357 6.3e-06 56.2 176 27.3
Rhsim13G0072500 Rhododendron simsii HOM05D000495 ORTHO05D000357 8.2e-06 55.8 176 27.3
Sc07g0007880 Simmondsia chinensis HOM05D000495 ORTHO05D000357 8.2e-06 55.8 247 26.7
Sopen06g030160 Solanum pennellii HOM05D000495 ORTHO05D000357 8.2e-06 55.8 266 25.2
TWI60G1598 Tripterygium wilfordii HOM05D000495 ORTHO05D000357 8.2e-06 55.8 264 25.8


User provided reference genes

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