Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0101s0012 Marchantia polymorpha HOM05D004930 ORTHO05D006531 2.8e-258 894.8 467 100.0
AagrBONN_evm.TU.Sc2ySwM_344.3941 Anthoceros agrestis HOM05D004930 ORTHO05D006531 1.2e-107 394.4 259 74.5
SEGI_13232 Sequoiadendron giganteum HOM05D004930 ORTHO05D006531 9.8e-102 374.8 261 68.6
A08p08610 Brassica napus HOM05D004930 ORTHO05D006531 4.5e-99 365.9 258 68.6
BraA08t32874Z Brassica rapa HOM05D004930 ORTHO05D006531 4.5e-99 365.9 258 68.6
Pp3c11_20720 Physcomitrium patens HOM05D004930 ORTHO05D006531 7.7e-99 365.2 347 56.5
BcaC07g37556 Brassica carinata HOM05D004930 ORTHO05D006531 1.7e-98 364.0 258 67.8
RcHm_v2.0_Chr7g0223001 Rosa chinensis HOM05D004930 ORTHO05D006531 1.7e-98 364.0 258 67.1
CAN.G1577.7 Capsicum annuum HOM05D004930 ORTHO05D006531 2.9e-98 363.2 258 68.6
SMO145G0200 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 5.0e-98 362.5 261 67.4
Carub.0001s3147 Capsella rubella HOM05D004930 ORTHO05D006531 6.5e-98 362.1 258 67.1
Eucgr.G00613 Eucalyptus grandis HOM05D004930 ORTHO05D006531 6.5e-98 362.1 261 65.5
FvH4_5g29680 Fragaria vesca HOM05D004930 ORTHO05D006531 8.5e-98 361.7 258 66.7
FAN13G1313 Fragaria x ananassa HOM05D004930 ORTHO05D006531 8.5e-98 361.7 258 66.7
ClCG05G009760 Citrullus lanatus HOM05D004930 ORTHO05D006531 1.1e-97 361.3 258 66.3
PGSC0003DMG400023754 Solanum tuberosum HOM05D004930 ORTHO05D006531 1.1e-97 361.3 258 68.6
AL1G47670 Arabidopsis lyrata HOM05D004930 ORTHO05D006531 1.5e-97 360.9 260 66.2
AT1G33270 Arabidopsis thaliana HOM05D004930 ORTHO05D006531 1.9e-97 360.5 258 66.7
CiPaw.06G148500 Carya illinoinensis HOM05D004930 ORTHO05D006531 1.9e-97 360.5 258 66.7
Gohir.A01G001000 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.9e-97 360.5 258 66.3
Gohir.D01G000700 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.9e-97 360.5 258 66.3
Gorai.002G001200 Gossypium raimondii HOM05D004930 ORTHO05D006531 1.9e-97 360.5 258 66.3
Sp1g28730 Schrenkiella parvula HOM05D004930 ORTHO05D006531 1.9e-97 360.5 258 66.7
CsaV3_3G018910 Cucumis sativus L. HOM05D004930 ORTHO05D006531 4.2e-97 359.4 258 65.9
TWI59G0754 Tripterygium wilfordii HOM05D004930 ORTHO05D006531 4.2e-97 359.4 261 66.3
MELO3C019485.2 Cucumis melo HOM05D004930 ORTHO05D006531 5.5e-97 359.0 258 65.9
Solyc01g104310.3 Solanum lycopersicum HOM05D004930 ORTHO05D006531 5.5e-97 359.0 258 67.8
Sopen01g046750 Solanum pennellii HOM05D004930 ORTHO05D006531 5.5e-97 359.0 258 67.8
Thecc.02G040000 Theobroma cacao HOM05D004930 ORTHO05D006531 9.4e-97 358.2 258 67.1
CARHR032640 Cardamine hirsuta HOM05D004930 ORTHO05D006531 1.6e-96 357.5 258 66.3
Cfa005536 Carpinus fangiana HOM05D004930 ORTHO05D006531 1.6e-96 357.5 261 65.1
Potri.001G209500 Populus trichocarpa HOM05D004930 ORTHO05D006531 2.1e-96 357.1 258 66.3
BcaB04g17919 Brassica carinata HOM05D004930 ORTHO05D006531 2.7e-96 356.7 258 66.3
Potri.003G020800 Populus trichocarpa HOM05D004930 ORTHO05D006531 2.7e-96 356.7 258 65.9
TAR628G0980 Trochodendron aralioides HOM05D004930 ORTHO05D006531 3.6e-96 356.3 261 67.0
Duzib248G0906 Durio zibethinus HOM05D004930 ORTHO05D006531 4.7e-96 355.9 261 65.5
Duzib052G0674 Durio zibethinus HOM05D004930 ORTHO05D006531 6.1e-96 355.5 258 65.9
CANSAT11G0917 Cannabis sativa HOM05D004930 ORTHO05D006531 8.0e-96 355.1 258 65.5
Cpa.g.sc2.5 Carica papaya HOM05D004930 ORTHO05D006531 8.0e-96 355.1 258 66.3
COL.COLO4_17882 Corchorus olitorius HOM05D004930 ORTHO05D006531 8.0e-96 355.1 258 66.3
Nitab4.5_0011195g0040 Nicotiana tabacum HOM05D004930 ORTHO05D006531 8.0e-96 355.1 274 65.3
ATR0684G093 Amborella trichopoda HOM05D004930 ORTHO05D006531 1.0e-95 354.8 257 67.7
Atru.chr6.830 Acer truncatum HOM05D004930 ORTHO05D006531 1.4e-95 354.4 258 66.7
SGA_v2.0_scaffold145G36067 Striga asiatica HOM05D004930 ORTHO05D006531 1.4e-95 354.4 261 66.3
CSS0021494 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 2.3e-95 353.6 258 66.3
Lj6g0009653 Lotus japonicus HOM05D004930 ORTHO05D006531 3.0e-95 353.2 258 65.9
MD15G1421100 Malus domestica HOM05D004930 ORTHO05D006531 3.0e-95 353.2 259 65.6
FAN04G2298 Fragaria x ananassa HOM05D004930 ORTHO05D006531 4.0e-95 352.8 270 63.7
FAN18G2930 Fragaria x ananassa HOM05D004930 ORTHO05D006531 4.0e-95 352.8 270 63.7
Phvul.006G213000 Phaseolus vulgaris HOM05D004930 ORTHO05D006531 4.0e-95 352.8 259 65.3
arahy.Tifrunner.gnm1.ann1.PLNC5S Arachis hypogaea HOM05D004930 ORTHO05D006531 6.8e-95 352.1 258 65.9
Lalb_Chr18g0060861 Lupinus albus HOM05D004930 ORTHO05D006531 6.8e-95 352.1 258 65.1
SalBow6G0918 Salvia bowleyana HOM05D004930 ORTHO05D006531 6.8e-95 352.1 258 66.3
SalBow6G1869 Salvia bowleyana HOM05D004930 ORTHO05D006531 6.8e-95 352.1 258 66.3
arahy.Tifrunner.gnm1.ann1.3M9FW6 Arachis hypogaea HOM05D004930 ORTHO05D006531 8.8e-95 351.7 258 65.9
Ciclev10001315m.g Citrus clementina HOM05D004930 ORTHO05D006531 8.8e-95 351.7 258 64.3
Hund04330 Selenicereus undatus HOM05D004930 ORTHO05D006531 8.8e-95 351.7 258 66.3
Cc02_g22360 Coffea canephora HOM05D004930 ORTHO05D006531 1.2e-94 351.3 304 58.6
ECA236G4599 Erigeron canadensis HOM05D004930 ORTHO05D006531 1.2e-94 351.3 253 68.0
TAR376G0678 Trochodendron aralioides HOM05D004930 ORTHO05D006531 1.5e-94 350.9 261 65.5
TPR.G2103 Trifolium pratense HOM05D004930 ORTHO05D006531 2.0e-94 350.5 258 64.3
DCAR_001819 Daucus carota HOM05D004930 ORTHO05D006531 2.6e-94 350.1 261 65.1
THA.LOC104810264 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 2.6e-94 350.1 261 63.2
VMungo0540G0757 Vigna mungo HOM05D004930 ORTHO05D006531 3.4e-94 349.7 259 64.5
A09p32980 Brassica napus HOM05D004930 ORTHO05D006531 4.4e-94 349.4 258 64.3
BraA09t38838Z Brassica rapa HOM05D004930 ORTHO05D006531 4.4e-94 349.4 258 64.3
Ca_00086_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 4.4e-94 349.4 258 64.0
Aa31LG6G7800 Aethionema arabicum HOM05D004930 ORTHO05D006531 5.7e-94 349.0 258 63.2
Glyma.15G047800 Glycine max HOM05D004930 ORTHO05D006531 7.5e-94 348.6 259 64.5
CDE05G0822 Ceratophyllum demersum HOM05D004930 ORTHO05D006531 9.8e-94 348.2 260 65.4
Glyma.08G184900 Glycine max HOM05D004930 ORTHO05D006531 9.8e-94 348.2 259 64.1
Rhsim05G0119100 Rhododendron simsii HOM05D004930 ORTHO05D006531 9.8e-94 348.2 258 66.7
Medtr2g007650 Medicago truncatula HOM05D004930 ORTHO05D006531 1.3e-93 347.8 258 64.0
Psat1g224280 Pisum sativum HOM05D004930 ORTHO05D006531 1.3e-93 347.8 258 64.0
Lsat_1_v5_gn_7_77761 Lactuca sativa HOM05D004930 ORTHO05D006531 1.7e-93 347.4 253 68.4
BcaB07g32965 Brassica carinata HOM05D004930 ORTHO05D006531 2.2e-93 347.1 258 63.6
BcaC08g43878 Brassica carinata HOM05D004930 ORTHO05D006531 2.2e-93 347.1 258 64.0
BolC6t36417H Brassica oleracea HOM05D004930 ORTHO05D006531 2.2e-93 347.1 258 64.0
EL10Ac6g15372 Beta vulgaris HOM05D004930 ORTHO05D006531 2.8e-93 346.7 258 67.1
PGR042G0956 Punica granatum HOM05D004930 ORTHO05D006531 2.8e-93 346.7 271 63.1
HanXRQChr11g0333531 Helianthus annuus HOM05D004930 ORTHO05D006531 8.3e-93 345.1 253 67.2
Nn1g08650 Nelumbo nucifera HOM05D004930 ORTHO05D006531 8.3e-93 345.1 263 63.1
GSVIVG01022999001 Vitis vinifera HOM05D004930 ORTHO05D006531 8.3e-93 345.1 252 66.3
Actinidia39050 Actinidia chinensis HOM05D004930 ORTHO05D006531 1.8e-92 344.0 253 66.0
C06p12670 Brassica napus HOM05D004930 ORTHO05D006531 1.8e-92 344.0 258 62.8
Os11g0546300 Oryza sativa ssp. japonica HOM05D004930 ORTHO05D006531 5.4e-92 342.4 260 61.9
Sc07g0007240 Simmondsia chinensis HOM05D004930 ORTHO05D006531 7.0e-92 342.0 258 64.7
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 2.0e-91 340.5 252 66.3
MBI03_g28294_MAGBIO Magnolia biondii HOM05D004930 ORTHO05D006531 1.1e-89 334.7 261 62.1
Lalb_Chr20g0123411 Lupinus albus HOM05D004930 ORTHO05D006531 5.6e-89 332.4 258 62.4
Zm00001eb113740 Zea mays HOM05D004930 ORTHO05D006531 2.8e-88 330.1 260 61.5
Gohir.D08G010200 Gossypium hirsutum HOM05D004930 ORTHO05D006531 8.9e-87 325.1 258 60.1
Gorai.004G003500 Gossypium raimondii HOM05D004930 ORTHO05D006531 8.9e-87 325.1 258 60.1
Gohir.A08G000149 Gossypium hirsutum HOM05D004930 ORTHO05D006531 4.4e-86 322.8 258 59.3
Thhalv10007991m.g Eutrema salsugineum HOM05D004930 ORTHO05D006531 3.7e-85 319.7 230 67.0
PSO170G4712 Papaver somniferum HOM05D004930 ORTHO05D006531 8.3e-85 318.5 257 60.7
BolC8t47898H Brassica oleracea HOM05D004930 ORTHO05D006531 5.4e-84 315.8 305 54.8
AagrBONN_evm.TU.Sc2ySwM_344.3947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.2e-83 314.7 258 62.0
Ah.03g147430 Amaranthus hybridus HOM05D004930 ORTHO05D006531 2.7e-83 313.5 258 61.6
Lj5A251T70 Lonicera japonica HOM05D004930 ORTHO05D006531 3.5e-83 313.2 261 60.5
Nitab4.5_0002245g0180 Nicotiana tabacum HOM05D004930 ORTHO05D006531 2.9e-82 310.1 258 61.2
THA.LOC104813074 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 9.5e-81 305.1 232 63.8
QL02p098488 Quercus lobata HOM05D004930 ORTHO05D006531 2.1e-80 303.9 376 44.7
AUR62017811 Chenopodium quinoa HOM05D004930 ORTHO05D006531 1.0e-79 301.6 274 58.4
Sabra03G0012100 Salix brachista HOM05D004930 ORTHO05D006531 8.9e-79 298.5 388 43.6
CBR_g22336 Chara braunii HOM05D004930 ORTHO05D006531 1.2e-78 298.1 211 66.8
Sabra01G0161800 Salix brachista HOM05D004930 ORTHO05D006531 3.4e-78 296.6 306 52.6
SMO139G0053 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 1.1e-76 291.6 214 65.9
Peaxi162Scf00011g00243 Petunia axillaris HOM05D004930 ORTHO05D006531 2.4e-76 290.4 201 68.2
vmacro01769 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 3.5e-75 286.6 254 55.9
Oeu012747.1 Olea europaea HOM05D004930 ORTHO05D006531 6.0e-75 285.8 203 66.5
Dinv19356 Davidia involucrata HOM05D004930 ORTHO05D006531 5.0e-74 282.7 198 69.2
Rhsim11G0130300 Rhododendron simsii HOM05D004930 ORTHO05D006531 8.6e-74 282.0 204 65.7
Ca_29925_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 2.5e-73 280.4 201 65.7
HPP92_002187 Vanilla planifolia HOM05D004930 ORTHO05D006531 3.5e-67 260.0 193 64.2
AUR62003501 Chenopodium quinoa HOM05D004930 ORTHO05D006531 8.1e-64 248.8 201 62.2
HanXRQChr02g0058791 Helianthus annuus HOM05D004930 ORTHO05D006531 3.4e-62 243.4 178 65.2
Manes.07G014400 Manihot esculenta HOM05D004930 ORTHO05D006531 1.3e-58 231.5 167 67.1
Sed0026856 Sechium edule HOM05D004930 ORTHO05D006531 1.7e-58 231.1 165 69.1
Prupe.1G566300 Prunus persica HOM05D004930 ORTHO05D006531 1.5e-57 228.0 165 66.7
CSS0024235 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 6.0e-51 206.1 279 46.6
vmacro19901 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 4.3e-49 199.9 475 32.4
Haze_01635 Corylus avellana HOM05D004930 ORTHO05D006531 4.3e-41 173.3 129 65.1
Cre03.g195500 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 6.9e-39 166.0 249 39.4
Cre12.g530950 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 6.4e-37 159.5 230 38.7
MCO11G494 Micromonas commoda HOM05D004930 ORTHO05D006531 1.3e-32 145.2 287 34.5
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 2.8e-24 117.5 254 31.9
CARHR054090 Cardamine hirsuta HOM05D004930 ORTHO05D006531 1.1e-15 89.0 89 53.9
MCO01G237 Micromonas commoda HOM05D004930 ORTHO05D006531 3.4e-14 84.0 166 34.3
PRCOL_00003693 Prasinoderma coloniale HOM05D004930 ORTHO05D006531 2.9e-13 80.9 157 40.1
FvH4_3g29702 Fragaria vesca HOM05D004930 ORTHO05D011275 1.4e-12 78.6 56 66.1
FAN11G3733 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.4e-12 78.6 56 66.1
MCO09G146 Micromonas commoda HOM05D004930 ORTHO05D270306 1.9e-12 78.2 252 26.6
AUR62003500 Chenopodium quinoa HOM05D004930 ORTHO05D006531 1.2e-11 75.5 56 64.3
FAN06G5097 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.6e-11 75.1 56 64.3
FAN25G1134 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.6e-11 75.1 56 64.3
FvH4_3g12743 Fragaria vesca HOM05D004930 ORTHO05D006531 2.1e-11 74.7 56 64.3
Cre09.g400219 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 7.9e-11 72.8 159 35.8
Migut.N01037 Erythranthe guttata HOM05D004930 ORTHO05D006531 1.8e-10 71.6 56 60.7
CBR_g45217 Chara braunii HOM05D004930 ORTHO05D028745 3.9e-10 70.5 165 32.7
Cre10.g431350 Chlamydomonas reinhardtii HOM05D039848 ORTHO05D028745 3.9e-10 70.5 175 30.3
FAN01G0209 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.9e-10 70.5 56 57.1
FAN12G1704 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.9e-10 70.5 56 57.1
FAN17G1951 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.9e-10 70.5 56 57.1
Ca_20167_v3 Cicer arietinum L. HOM05D004930 ORTHO05D000002 8.8e-10 69.3 48 68.8
FvH4_4g16550 Fragaria vesca HOM05D004930 ORTHO05D011275 8.8e-10 69.3 56 55.4
FAN17G0369 Fragaria x ananassa HOM05D004930 ORTHO05D011275 1.1e-09 68.9 56 55.4
FAN17G1425 Fragaria x ananassa HOM05D004930 ORTHO05D006531 7.4e-09 66.2 56 53.6
Cre26.g756847 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D028745 1.1e-07 62.4 173 30.6


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