Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0101s0010 Marchantia polymorpha HOM05D007654 ORTHO05D009697 1.3e-32 142.5 73 100.0
Mapoly0101s0009 Marchantia polymorpha HOM05D007654 ORTHO05D009697 2.0e-22 108.6 63 85.7
Manes.05G066600 Manihot esculenta HOM05D007654 ORTHO05D009697 1.7e-08 62.4 54 57.4
vmacro14977 Vaccinium macrocarpon HOM05D007654 ORTHO05D009697 2.9e-08 61.6 54 55.6
Rhsim01G0281900 Rhododendron simsii HOM05D007654 ORTHO05D009697 3.7e-08 61.2 50 60.0
Aa31LG10G16730 Aethionema arabicum HOM05D007654 ORTHO05D009697 4.9e-08 60.8 68 47.1
AL5G45700 Arabidopsis lyrata HOM05D007654 ORTHO05D009697 4.9e-08 60.8 64 50.0
AT3G62920 Arabidopsis thaliana HOM05D007654 ORTHO05D009697 4.9e-08 60.8 64 50.0
HanXRQChr11g0350121 Helianthus annuus HOM05D007654 ORTHO05D009697 4.9e-08 60.8 50 58.0
CSS0025949 Camellia sinensis var. sinensis HOM05D007654 ORTHO05D009697 6.4e-08 60.5 58 51.7
QL12p024465 Quercus lobata HOM05D007654 ORTHO05D009697 6.4e-08 60.5 67 47.8
GSVIVG01010984001 Vitis vinifera HOM05D007654 ORTHO05D009697 6.4e-08 60.5 54 51.9
Cpa.g.sc9.182 Carica papaya HOM05D007654 ORTHO05D009697 8.3e-08 60.1 50 56.0
Hma1.2p1_0209F.1_g088920 Hydrangea macrophylla HOM05D007654 ORTHO05D009697 8.3e-08 60.1 62 53.2
MD11G1300800 Malus domestica HOM05D007654 ORTHO05D009697 8.3e-08 60.1 53 52.8
TPR.G9273 Trifolium pratense HOM05D007654 ORTHO05D009697 8.3e-08 60.1 58 51.7
CARHR173210 Cardamine hirsuta HOM05D007654 ORTHO05D009697 1.1e-07 59.7 64 48.4
Glyma.19G207800 Glycine max HOM05D007654 ORTHO05D009697 1.1e-07 59.7 53 50.9
Dinv33011 Davidia involucrata HOM05D007654 ORTHO05D009697 1.4e-07 59.3 54 51.9
Prupe.8G254700 Prunus persica HOM05D007654 ORTHO05D009697 1.4e-07 59.3 53 52.8
arahy.Tifrunner.gnm1.ann1.4942C7 Arachis hypogaea HOM05D007654 ORTHO05D009697 1.9e-07 58.9 54 50.0
BolC8t51346H Brassica oleracea HOM05D007654 ORTHO05D009697 1.9e-07 58.9 50 54.0
CANSAT25G3801 Cannabis sativa HOM05D007654 ORTHO05D009697 1.9e-07 58.9 53 52.8
Ca_09124_v3 Cicer arietinum L. HOM05D000091 ORTHO05D003679 1.9e-07 58.9 54 53.7
COL.COLO4_08007 Corchorus olitorius HOM05D000091 ORTHO05D003679 1.9e-07 58.9 49 55.1
MBI18_g01968_MAGBIO Magnolia biondii HOM05D007654 ORTHO05D009697 1.9e-07 58.9 50 56.0
Medtr7g108290 Medicago truncatula HOM05D000091 ORTHO05D003679 1.9e-07 58.9 58 51.7
Phvul.001G203700 Phaseolus vulgaris HOM05D007654 ORTHO05D009697 1.9e-07 58.9 58 48.3
TWI59G0903 Tripterygium wilfordii HOM05D007654 ORTHO05D009697 1.9e-07 58.9 50 56.0
Atru.chr5.1253 Acer truncatum HOM05D007654 ORTHO05D009697 2.4e-07 58.5 53 50.9
A09p54770 Brassica napus HOM05D007654 ORTHO05D009697 2.4e-07 58.5 64 46.9
C08p37630 Brassica napus HOM05D007654 ORTHO05D009697 2.4e-07 58.5 64 46.9
BraA09t40886Z Brassica rapa HOM05D007654 ORTHO05D009697 2.4e-07 58.5 64 46.9
ECA236G4373 Erigeron canadensis HOM05D007654 ORTHO05D009697 2.4e-07 58.5 53 54.7
Migut.D00166 Erythranthe guttata HOM05D007654 ORTHO05D009697 2.4e-07 58.5 58 50.0
Glyma.03G210600 Glycine max HOM05D007654 ORTHO05D009697 2.4e-07 58.5 53 49.1
MD03G1278400 Malus domestica HOM05D007654 ORTHO05D009697 2.4e-07 58.5 46 58.7
Nitab4.5_0002006g0110 Nicotiana tabacum HOM05D007654 ORTHO05D009697 2.4e-07 58.5 54 55.6
TAR636G0595 Trochodendron aralioides HOM05D007654 ORTHO05D009697 2.4e-07 58.5 54 51.9
Zm00001eb365450 Zea mays HOM05D007654 ORTHO05D009697 2.4e-07 58.5 47 57.4
Aqoxy2G03067 Aquilegia oxysepala HOM05D007654 ORTHO05D009697 3.2e-07 58.2 53 54.7
A04p00450 Brassica napus HOM05D007654 ORTHO05D009697 3.2e-07 58.2 68 44.1
BraA04t15764Z Brassica rapa HOM05D007654 ORTHO05D009697 3.2e-07 58.2 68 44.1
Carub.0005s2957 Capsella rubella HOM05D007654 ORTHO05D009697 3.2e-07 58.2 64 48.4
RcHm_v2.0_Chr6g0292931 Rosa chinensis HOM05D007654 ORTHO05D009697 3.2e-07 58.2 53 52.8
Gohir.A12G009300 Gossypium hirsutum HOM05D007654 ORTHO05D009697 4.1e-07 57.8 49 55.1
Gohir.D12G009200 Gossypium hirsutum HOM05D007654 ORTHO05D009697 4.1e-07 57.8 49 55.1
Gorai.008G009300 Gossypium raimondii HOM05D007654 ORTHO05D009697 4.1e-07 57.8 49 55.1
Lj1g0000519 Lotus japonicus HOM05D007654 ORTHO05D009697 4.1e-07 57.8 53 49.1
Manes.01G215200 Manihot esculenta HOM05D007654 ORTHO05D009697 4.1e-07 57.8 54 51.9
SalBow3G4040 Salvia bowleyana HOM05D007654 ORTHO05D009697 4.1e-07 57.8 50 54.0
Actinidia21070 Actinidia chinensis HOM05D007654 ORTHO05D009697 5.4e-07 57.4 47 57.4
BcaB02g08089 Brassica carinata HOM05D007654 ORTHO05D009697 5.4e-07 57.4 64 46.9
Thhalv10006348m.g Eutrema salsugineum HOM05D007654 ORTHO05D009697 5.4e-07 57.4 64 46.9
Os05g0371500 Oryza sativa ssp. japonica HOM05D007654 ORTHO05D009697 5.4e-07 57.4 51 52.9
Thecc.01G292900 Theobroma cacao HOM05D007654 ORTHO05D009697 5.4e-07 57.4 49 57.1
Cfa005999 Carpinus fangiana HOM05D007654 ORTHO05D009697 7.0e-07 57.0 53 50.9
Haze_04848 Corylus avellana HOM05D007654 ORTHO05D009697 7.0e-07 57.0 51 51.0
Duzib138G0105 Durio zibethinus HOM05D007654 ORTHO05D009697 7.0e-07 57.0 49 53.1
Lsat_1_v5_gn_8_54301 Lactuca sativa HOM05D007654 ORTHO05D009697 7.0e-07 57.0 53 50.9
Lalb_Chr15g0078691 Lupinus albus HOM05D007654 ORTHO05D009697 7.0e-07 57.0 50 52.0
PSO170G3373 Papaver somniferum HOM05D007654 ORTHO05D009697 7.0e-07 57.0 53 50.9
PGR119G1851 Punica granatum HOM05D007654 ORTHO05D009697 7.0e-07 57.0 60 48.3
FAN27G0435 Fragaria x ananassa HOM05D000091 ORTHO05D003679 9.2e-07 56.6 53 50.9
EL10Ac7g17424 Beta vulgaris HOM05D007654 ORTHO05D009697 1.2e-06 56.2 50 54.0
FAN15G1923 Fragaria x ananassa HOM05D000091 ORTHO05D003679 1.2e-06 56.2 53 50.9
Nn3g21360 Nelumbo nucifera HOM05D007654 ORTHO05D009697 1.2e-06 56.2 67 44.8
Potri.014G133600 Populus trichocarpa HOM05D007654 ORTHO05D009697 1.2e-06 56.2 54 50.0
Actinidia21074 Actinidia chinensis HOM05D007654 ORTHO05D009697 1.6e-06 55.8 50 52.0
Lsat_1_v5_gn_9_47321 Lactuca sativa HOM05D007654 ORTHO05D009697 1.6e-06 55.8 53 50.9
arahy.Tifrunner.gnm1.ann1.3EGQ08 Arachis hypogaea HOM05D007654 ORTHO05D009697 2.0e-06 55.5 47 53.2
CiPaw.07G102300 Carya illinoinensis HOM05D007654 ORTHO05D009697 2.0e-06 55.5 53 50.9
Ciclev10023123m.g Citrus clementina HOM05D007654 ORTHO05D009697 2.0e-06 55.5 62 45.2
Oeu057570.1 Olea europaea HOM05D007654 ORTHO05D009697 2.0e-06 55.5 54 48.1
Hund18071 Selenicereus undatus HOM05D007654 ORTHO05D009697 2.0e-06 55.5 50 52.0
SEGI_14019 Sequoiadendron giganteum HOM05D007654 ORTHO05D009697 2.0e-06 55.5 46 52.2
PGSC0003DMG400011382 Solanum tuberosum HOM05D007654 ORTHO05D009697 2.0e-06 55.5 54 51.9
AagrBONN_evm.TU.Sc2ySwM_344.4968 Anthoceros agrestis HOM05D007654 ORTHO05D009697 2.7e-06 55.1 50 52.0
C04p30320 Brassica napus HOM05D007654 ORTHO05D009697 2.7e-06 55.1 50 48.0
BolC4t24565H Brassica oleracea HOM05D007654 ORTHO05D009697 2.7e-06 55.1 50 48.0
AUR62034665 Chenopodium quinoa HOM05D007654 ORTHO05D009697 2.7e-06 55.1 50 54.0
Eucgr.H01198 Eucalyptus grandis HOM05D007654 ORTHO05D009697 2.7e-06 55.1 53 49.1
Eucgr.L03487 Eucalyptus grandis HOM05D007654 ORTHO05D009697 2.7e-06 55.1 68 42.6
Solyc09g074620.3 Solanum lycopersicum HOM05D007654 ORTHO05D009697 2.7e-06 55.1 54 51.9
Sopen09g029490 Solanum pennellii HOM05D007654 ORTHO05D009697 2.7e-06 55.1 54 51.9
arahy.Tifrunner.gnm1.ann1.559R1C Arachis hypogaea HOM05D007654 ORTHO05D009697 3.5e-06 54.7 54 48.1
Cc01_g20410 Coffea canephora HOM05D007654 ORTHO05D009697 3.5e-06 54.7 66 43.9
unitig_0.g650 Utricularia gibba HOM05D007654 ORTHO05D009697 3.5e-06 54.7 51 54.9
MELO3C016052.2 Cucumis melo HOM05D007654 ORTHO05D009697 4.6e-06 54.3 50 50.0
CsaV3_7G028850 Cucumis sativus L. HOM05D007654 ORTHO05D009697 4.6e-06 54.3 50 50.0
ClCG09G006300 Citrullus lanatus HOM05D007654 ORTHO05D009697 7.8e-06 53.5 50 48.0
FAN24G2398 Fragaria x ananassa HOM05D000091 ORTHO05D003679 7.8e-06 53.5 53 49.1


User provided reference genes

Program Settings