Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0100s0057 Marchantia polymorpha HOM05D008409 ORTHO05D010483 4.1e-81 304.7 153 100.0
SMO141G0292 Selaginella moellendorffii HOM05D000322 ORTHO05D010483 7.5e-19 97.8 149 34.9
Mapoly0151s0036 Marchantia polymorpha HOM05D000322 ORTHO05D000186 1.3e-15 87.0 153 32.7
SMO337G0049 Selaginella moellendorffii HOM05D000322 ORTHO05D000186 1.7e-15 86.7 142 30.3
Mapoly0131s0013 Marchantia polymorpha HOM05D008409 ORTHO05D010483 2.3e-15 86.3 149 34.2
SMO141G0029 Selaginella moellendorffii HOM05D000322 ORTHO05D000186 3.0e-15 85.9 144 32.6
SEGI_04347 Sequoiadendron giganteum HOM05D000197 ORTHO05D000114 6.6e-15 84.7 152 33.6
AagrBONN_evm.TU.Sc2ySwM_228.4478 Anthoceros agrestis HOM05D008409 ORTHO05D010483 4.0e-12 75.5 155 29.0
Dinv24891 Davidia involucrata HOM05D000197 ORTHO05D000114 1.2e-11 73.9 146 30.8
Actinidia15014 Actinidia chinensis HOM05D000197 ORTHO05D000114 2.6e-11 72.8 146 31.5
Prupe.4G188300 Prunus persica HOM05D001593 ORTHO05D010032 3.4e-11 72.4 149 29.5
Nitab4.5_0005555g0020 Nicotiana tabacum HOM05D000197 ORTHO05D000114 4.4e-11 72.0 145 30.3
SalBow7G3151 Salvia bowleyana HOM05D001593 ORTHO05D010032 5.8e-11 71.6 151 34.4
Thecc.02G180200 Theobroma cacao HOM05D008409 ORTHO05D010483 5.8e-11 71.6 145 32.4
ATR0693G026 Amborella trichopoda HOM05D000322 ORTHO05D000186 7.6e-11 71.2 150 33.3
QL03p062127 Quercus lobata HOM05D000197 ORTHO05D000114 7.6e-11 71.2 145 32.4
vmacro16272 Vaccinium macrocarpon HOM05D000197 ORTHO05D000114 7.6e-11 71.2 145 31.7
Mapoly0131s0015 Marchantia polymorpha HOM05D012277 ORTHO05D000114 9.9e-11 70.9 122 32.8
vmacro16271 Vaccinium macrocarpon HOM05D000197 ORTHO05D000114 9.9e-11 70.9 147 32.0
PGSC0003DMG400004131 Solanum tuberosum HOM05D000197 ORTHO05D000114 1.3e-10 70.5 145 30.3
Nitab4.5_0001474g0070 Nicotiana tabacum HOM05D000197 ORTHO05D000114 2.2e-10 69.7 148 29.7
ATR0737G133 Amborella trichopoda HOM05D008409 ORTHO05D010483 2.9e-10 69.3 146 30.8
Cfa009126 Carpinus fangiana HOM05D000197 ORTHO05D000114 2.9e-10 69.3 145 30.3
TAR374G0922 Trochodendron aralioides HOM05D000197 ORTHO05D000114 2.9e-10 69.3 145 29.0
Peaxi162Scf00421g00328 Petunia axillaris HOM05D000197 ORTHO05D000114 3.8e-10 68.9 145 29.7
Pp3c10_2750 Physcomitrium patens HOM05D012277 ORTHO05D010483 3.8e-10 68.9 113 33.6
Pp3c10_2760 Physcomitrium patens HOM05D012277 ORTHO05D010483 3.8e-10 68.9 113 33.6
MD13G1088200 Malus domestica HOM05D000197 ORTHO05D000114 4.9e-10 68.6 145 30.3
Nn1g06548 Nelumbo nucifera HOM05D008409 ORTHO05D010483 4.9e-10 68.6 147 32.0
Solyc05g005865.1 Solanum lycopersicum HOM05D000197 ORTHO05D000114 6.4e-10 68.2 145 31.0
CSS0039522 Camellia sinensis var. sinensis HOM05D000197 ORTHO05D000114 1.1e-09 67.4 146 29.5
FvH4_3g20820 Fragaria vesca HOM05D001593 ORTHO05D010032 1.1e-09 67.4 150 32.0
VMungo1309G1650 Vigna mungo HOM05D001593 ORTHO05D010032 1.1e-09 67.4 151 31.8
Gohir.D04G143000 Gossypium hirsutum HOM05D008409 ORTHO05D010483 1.4e-09 67.0 146 32.9
Prupe.1G258100 Prunus persica HOM05D000197 ORTHO05D000114 1.4e-09 67.0 145 28.3
Rhsim12G0123000 Rhododendron simsii HOM05D000197 ORTHO05D000114 1.4e-09 67.0 145 29.0
MSTRG.611 Avicennia marina HOM05D000197 ORTHO05D000114 1.9e-09 66.6 149 30.2
MBI15_g00934_MAGBIO Magnolia biondii HOM05D000197 ORTHO05D000114 1.9e-09 66.6 145 31.0
CiPaw.04G126300 Carya illinoinensis HOM05D008409 ORTHO05D010483 2.4e-09 66.2 147 32.0
FAN17G2379 Fragaria x ananassa HOM05D000197 ORTHO05D000114 2.4e-09 66.2 146 29.5
Gorai.012G128600 Gossypium raimondii HOM05D008409 ORTHO05D010483 2.4e-09 66.2 146 32.9
Potri.001G405600 Populus trichocarpa HOM05D001593 ORTHO05D010032 2.4e-09 66.2 149 32.9
Potri.011G127800 Populus trichocarpa HOM05D001593 ORTHO05D010032 2.4e-09 66.2 152 31.6
SMO332G0032 Selaginella moellendorffii HOM05D008409 ORTHO05D000186 2.4e-09 66.2 135 25.9
Ca_22763_v3 Cicer arietinum L. HOM05D000197 ORTHO05D000114 4.1e-09 65.5 145 28.3
Lj3A1050T27 Lonicera japonica HOM05D000197 ORTHO05D000114 4.1e-09 65.5 145 29.0
MD16G1088600 Malus domestica HOM05D000197 ORTHO05D000114 4.1e-09 65.5 145 29.0
Os08g0374000 Oryza sativa ssp. japonica HOM05D008409 ORTHO05D010483 4.1e-09 65.5 146 30.1
FAN07G2092 Fragaria x ananassa HOM05D000197 ORTHO05D000114 5.4e-09 65.1 146 28.8
Lalb_Chr19g0134421 Lupinus albus HOM05D001593 ORTHO05D010032 5.4e-09 65.1 146 30.1
Mapoly0063s0018 Marchantia polymorpha HOM05D001593 ORTHO05D002007 5.4e-09 65.1 149 29.5
Nn4g22865 Nelumbo nucifera HOM05D000197 ORTHO05D000114 5.4e-09 65.1 145 29.7
RcHm_v2.0_Chr4g0444321 Rosa chinensis HOM05D000197 ORTHO05D000114 5.4e-09 65.1 147 29.3
TAR622G0624 Trochodendron aralioides HOM05D000197 ORTHO05D000114 5.4e-09 65.1 145 28.3
TAR622G0730 Trochodendron aralioides HOM05D000197 ORTHO05D000114 7.1e-09 64.7 148 26.4
Cc11_g14370 Coffea canephora HOM05D000197 ORTHO05D000114 9.2e-09 64.3 149 28.2
Gohir.A04G103600 Gossypium hirsutum HOM05D008409 ORTHO05D010483 9.2e-09 64.3 146 32.2
CiPaw.05G148600 Carya illinoinensis HOM05D000197 ORTHO05D000114 1.2e-08 63.9 143 28.0
Sopen05g001890 Solanum pennellii HOM05D000197 ORTHO05D000114 1.2e-08 63.9 142 30.3
AUR62013976 Chenopodium quinoa HOM05D000197 ORTHO05D000114 1.6e-08 63.5 146 28.1
Ah.03g132470 Amaranthus hybridus HOM05D000197 ORTHO05D000114 2.1e-08 63.2 146 28.8
AUR62005328 Chenopodium quinoa HOM05D000197 ORTHO05D000114 2.1e-08 63.2 146 28.1
Potri.013G131000 Populus trichocarpa HOM05D008409 ORTHO05D010483 2.1e-08 63.2 145 32.4
Sc04g0008950 Simmondsia chinensis HOM05D000197 ORTHO05D000114 2.1e-08 63.2 149 26.8
Aqoxy4G01373 Aquilegia oxysepala HOM05D001593 ORTHO05D010032 2.7e-08 62.8 155 29.0
GSVIVG01020183001 Vitis vinifera HOM05D000197 ORTHO05D000114 2.7e-08 62.8 152 25.7
SMO141G0052 Selaginella moellendorffii HOM05D000322 ORTHO05D010483 3.5e-08 62.4 149 31.5
Atru.chr4.2935 Acer truncatum HOM05D000322 ORTHO05D000186 4.6e-08 62.0 155 29.0
Lj6C802G2 Lonicera japonica HOM05D000197 ORTHO05D000114 4.6e-08 62.0 139 29.5
PGR142G1945 Punica granatum HOM05D008409 ORTHO05D010483 4.6e-08 62.0 147 30.6
unitig_22.g6474 Utricularia gibba HOM05D000197 ORTHO05D000114 4.6e-08 62.0 149 30.9
CAN.G205.30 Capsicum annuum HOM05D000197 ORTHO05D000114 6.0e-08 61.6 145 27.6
Manes.03G115300 Manihot esculenta HOM05D001593 ORTHO05D010032 6.0e-08 61.6 149 28.9
Prupe.4G188400 Prunus persica HOM05D001593 ORTHO05D010032 6.0e-08 61.6 148 29.1
Pp3c13_23010 Physcomitrium patens HOM05D012277 ORTHO05D010483 7.8e-08 61.2 144 31.2
Pp3c13_23030 Physcomitrium patens HOM05D012277 ORTHO05D010483 7.8e-08 61.2 144 31.2
Lalb_Chr03g0030461 Lupinus albus HOM05D001593 ORTHO05D010032 1.0e-07 60.8 151 29.1
TWI09G0198 Tripterygium wilfordii HOM05D000322 ORTHO05D000186 1.0e-07 60.8 151 28.5
Eucgr.B02546 Eucalyptus grandis HOM05D000197 ORTHO05D000114 1.3e-07 60.5 145 26.2
Pp3c2_27350 Physcomitrium patens HOM05D012277 ORTHO05D010483 1.3e-07 60.5 126 31.0
Medtr3g055120 Medicago truncatula HOM05D001593 ORTHO05D010032 1.7e-07 60.1 152 28.9
PGSC0003DMG400013143 Solanum tuberosum HOM05D008409 ORTHO05D010483 1.7e-07 60.1 140 30.0
TAR629G0887 Trochodendron aralioides HOM05D000197 ORTHO05D000114 1.7e-07 60.1 145 26.9
Eucgr.F03348 Eucalyptus grandis HOM05D001593 ORTHO05D010032 2.3e-07 59.7 150 28.7
Nn8g41278 Nelumbo nucifera HOM05D000322 ORTHO05D000186 2.3e-07 59.7 163 27.6
AT1G24020 Arabidopsis thaliana HOM05D000197 ORTHO05D000114 3.0e-07 59.3 145 29.0
A07p13670 Brassica napus HOM05D000197 ORTHO05D000114 3.0e-07 59.3 145 28.3
C07p20100 Brassica napus HOM05D000197 ORTHO05D000114 3.0e-07 59.3 145 28.3
BolC7t42531H Brassica oleracea HOM05D000197 ORTHO05D000114 3.0e-07 59.3 145 28.3
BraA07t29119Z Brassica rapa HOM05D000197 ORTHO05D000114 3.0e-07 59.3 145 28.3
CDE02G1440 Ceratophyllum demersum HOM05D000322 ORTHO05D000186 3.0e-07 59.3 156 28.2
DCAR_009980 Daucus carota HOM05D001593 ORTHO05D010032 3.0e-07 59.3 147 33.3
FAN17G1064 Fragaria x ananassa HOM05D000197 ORTHO05D000114 3.0e-07 59.3 144 29.9
SalBow2G0185 Salvia bowleyana HOM05D000197 ORTHO05D000114 3.0e-07 59.3 149 26.8
BcaB03g14124 Brassica carinata HOM05D000197 ORTHO05D000114 3.9e-07 58.9 145 28.3
Mapoly0063s0024 Marchantia polymorpha HOM05D008409 ORTHO05D010032 3.9e-07 58.9 146 29.5
Cc01_g01380 Coffea canephora HOM05D001593 ORTHO05D010032 5.1e-07 58.5 150 28.7
Sed0020136 Sechium edule HOM05D000197 ORTHO05D000114 5.1e-07 58.5 145 23.4
PGSC0003DMG400004626 Solanum tuberosum HOM05D000322 ORTHO05D000186 5.1e-07 58.5 149 30.9
TPR.G23028 Trifolium pratense HOM05D001593 ORTHO05D010032 5.1e-07 58.5 115 33.0
TWI38G2157 Tripterygium wilfordii HOM05D001593 ORTHO05D010032 5.1e-07 58.5 151 27.8
AL1G37780 Arabidopsis lyrata HOM05D000197 ORTHO05D000114 6.6e-07 58.2 145 28.3
BcaC06g35074 Brassica carinata HOM05D000197 ORTHO05D000114 6.6e-07 58.2 145 27.6
Pp3c17_11500 Physcomitrium patens HOM05D012277 ORTHO05D010483 6.6e-07 58.2 114 32.5
PGR119G0191 Punica granatum HOM05D000197 ORTHO05D000114 6.6e-07 58.2 145 26.2
RcHm_v2.0_Chr4g0441741 Rosa chinensis HOM05D000197 ORTHO05D000114 6.6e-07 58.2 124 29.0
Carub.0001s2344 Capsella rubella HOM05D000197 ORTHO05D000114 8.6e-07 57.8 145 28.3
Migut.L01436 Erythranthe guttata HOM05D000197 ORTHO05D000114 8.6e-07 57.8 151 26.5
Thhalv10008991m.g Eutrema salsugineum HOM05D000197 ORTHO05D000114 1.1e-06 57.4 145 28.3
MBI06_g04179_MAGBIO Magnolia biondii HOM05D008409 ORTHO05D010483 1.1e-06 57.4 143 30.1
Os04g0465600 Oryza sativa ssp. japonica HOM05D000197 ORTHO05D000114 1.1e-06 57.4 156 27.6
Mapoly0040s0030 Marchantia polymorpha HOM05D000322 ORTHO05D000186 1.5e-06 57.0 147 28.6
Lsat_1_v5_gn_6_114720 Lactuca sativa HOM05D000322 ORTHO05D000186 1.9e-06 56.6 161 30.4
Lalb_Chr03g0030521 Lupinus albus HOM05D001593 ORTHO05D010032 1.9e-06 56.6 146 26.7
SEGI_23828 Sequoiadendron giganteum HOM05D000322 ORTHO05D000186 1.9e-06 56.6 146 33.6
FvH4_4g32760 Fragaria vesca HOM05D000197 ORTHO05D000114 2.5e-06 56.2 144 29.2
FAN12G1963 Fragaria x ananassa HOM05D000197 ORTHO05D000114 2.5e-06 56.2 144 29.2
CDE08G1179 Ceratophyllum demersum HOM05D000322 ORTHO05D000186 3.3e-06 55.8 90 37.8
Glyma.06G249800 Glycine max HOM05D001593 ORTHO05D010032 3.3e-06 55.8 151 27.2
HanXRQChr11g0339961 Helianthus annuus HOM05D000322 ORTHO05D000186 3.3e-06 55.8 142 27.5
HanXRQChr11g0339271 Helianthus annuus HOM05D000322 ORTHO05D000186 4.3e-06 55.5 150 28.7
Lsat_1_v5_gn_1_42501 Lactuca sativa HOM05D000322 ORTHO05D000186 4.3e-06 55.5 156 28.2
Lsat_1_v5_gn_1_59700 Lactuca sativa HOM05D001593 ORTHO05D002007 4.3e-06 55.5 108 33.3
Phvul.011G153600 Phaseolus vulgaris HOM05D001593 ORTHO05D010032 5.6e-06 55.1 152 27.6
SEGI_22247 Sequoiadendron giganteum HOM05D000322 ORTHO05D000186 5.6e-06 55.1 161 31.7
Mapoly0008s0207 Marchantia polymorpha HOM05D008409 ORTHO05D010032 7.3e-06 54.7 159 27.0
HanXRQChr11g0339281 Helianthus annuus HOM05D000322 ORTHO05D000186 9.6e-06 54.3 150 27.3
HanXRQChr11g0339951 Helianthus annuus HOM05D000322 ORTHO05D000186 9.6e-06 54.3 142 27.5
HanXRQChr11g0339971 Helianthus annuus HOM05D000322 ORTHO05D000186 9.6e-06 54.3 143 27.3
HanXRQChr11g0339981 Helianthus annuus HOM05D000322 ORTHO05D000186 9.6e-06 54.3 143 27.3
HanXRQChr11g0339991 Helianthus annuus HOM05D000322 ORTHO05D000186 9.6e-06 54.3 142 27.5
Lsat_1_v5_gn_1_42421 Lactuca sativa HOM05D000322 ORTHO05D000186 9.6e-06 54.3 156 28.8
SEGI_29216 Sequoiadendron giganteum HOM05D001593 ORTHO05D000001 9.6e-06 54.3 140 30.7
Zm00001eb080380 Zea mays HOM05D000197 ORTHO05D000114 9.6e-06 54.3 151 25.8


User provided reference genes

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