Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0100s0019 Marchantia polymorpha HOM05D024351 ORTHO05D014010 1.7e-76 289.7 193 100.0
Mapoly0008s0264 Marchantia polymorpha HOM05D001705 ORTHO05D002725 4.6e-29 132.1 127 48.0
Mapoly0032s0028 Marchantia polymorpha HOM05D001705 ORTHO05D002725 3.9e-12 75.9 130 36.2
Mapoly0084s0028 Marchantia polymorpha HOM05D024351 ORTHO05D014010 3.9e-12 75.9 104 38.5
Mapoly0048s0080 Marchantia polymorpha HOM05D022175 ORTHO05D014010 6.6e-12 75.1 127 33.9
Mapoly0001s0152 Marchantia polymorpha HOM05D024351 ORTHO05D005974 1.2e-10 70.9 132 34.1
Mapoly0096s0031 Marchantia polymorpha HOM05D001705 ORTHO05D002725 1.2e-10 70.9 145 31.7
Pp3c4_1760 Physcomitrium patens HOM05D022175 ORTHO05D014010 1.8e-09 67.0 109 36.7
FAN14G1839 Fragaria x ananassa HOM05D000053 ORTHO05D000448 2.0e-08 63.5 111 33.3
Pp3c25_12800 Physcomitrium patens HOM05D001705 ORTHO05D002725 2.6e-08 63.2 113 35.4
Mapoly0054s0114 Marchantia polymorpha HOM05D001705 ORTHO05D014010 3.4e-08 62.8 119 35.3
Os02g0156400 Oryza sativa ssp. japonica HOM05D001506 ORTHO05D000455 4.4e-08 62.4 108 29.6
Os02g0153700 Oryza sativa ssp. japonica HOM05D000094 ORTHO05D000455 9.9e-08 61.2 108 30.6
RcHm_v2.0_Chr3g0478161 Rosa chinensis HOM05D000053 ORTHO05D000448 1.3e-07 60.8 132 30.3
RcHm_v2.0_Chr3g0478311 Rosa chinensis HOM05D000053 ORTHO05D000448 1.7e-07 60.5 132 30.3
FvH4_6g21378 Fragaria vesca HOM05D000053 ORTHO05D000448 2.9e-07 59.7 127 30.7
FAN14G0406 Fragaria x ananassa HOM05D000053 ORTHO05D000448 2.9e-07 59.7 127 30.7
RcHm_v2.0_Chr3g0477991 Rosa chinensis HOM05D000053 ORTHO05D000448 2.9e-07 59.7 125 32.0
AagrBONN_evm.TU.Sc2ySwM_344.1978 Anthoceros agrestis HOM05D010742 ORTHO05D038371 3.7e-07 59.3 111 32.4
FvH4_6g21370 Fragaria vesca HOM05D000053 ORTHO05D000448 3.7e-07 59.3 107 30.8
FAN05G0080 Fragaria x ananassa HOM05D000053 ORTHO05D000448 3.7e-07 59.3 107 30.8
FAN09G2925 Fragaria x ananassa HOM05D000053 ORTHO05D000448 3.7e-07 59.3 106 32.1
Sc07g0007330 Simmondsia chinensis HOM05D001705 ORTHO05D002725 3.7e-07 59.3 117 32.5
SEGI_32165 Sequoiadendron giganteum HOM05D000071 ORTHO05D002217 4.9e-07 58.9 102 34.3
FvH4_6g21374 Fragaria vesca HOM05D000053 ORTHO05D000448 6.4e-07 58.5 114 32.5
FAN05G5435 Fragaria x ananassa HOM05D000053 ORTHO05D000448 6.4e-07 58.5 110 30.9
Os02g0153500 Oryza sativa ssp. japonica HOM05D000094 ORTHO05D000455 6.4e-07 58.5 108 30.6
Os02g0156200 Oryza sativa ssp. japonica HOM05D001506 ORTHO05D000455 6.4e-07 58.5 93 29.0
Os02g0156800 Oryza sativa ssp. japonica HOM05D001506 ORTHO05D000455 6.4e-07 58.5 106 26.4
Os02g0157400 Oryza sativa ssp. japonica HOM05D001506 ORTHO05D000455 6.4e-07 58.5 106 26.4
Mapoly0052s0127 Marchantia polymorpha HOM05D000071 ORTHO05D014010 8.4e-07 58.2 156 30.1
Mapoly0203s0012 Marchantia polymorpha HOM05D022175 ORTHO05D014010 8.4e-07 58.2 122 28.7
RcHm_v2.0_Chr3g0478091 Rosa chinensis HOM05D000053 ORTHO05D000448 8.4e-07 58.2 121 28.1
RcHm_v2.0_Chr3g0478141 Rosa chinensis HOM05D000053 ORTHO05D000448 8.4e-07 58.2 108 30.6
FAN02G1671 Fragaria x ananassa HOM05D000053 ORTHO05D000448 1.1e-06 57.8 114 31.6
AagrBONN_evm.TU.Sc2ySwM_344.1981 Anthoceros agrestis HOM05D010742 ORTHO05D000029 1.4e-06 57.4 105 32.4
TPR.G14146 Trifolium pratense HOM05D000053 ORTHO05D000035 1.4e-06 57.4 114 32.5
FAN14G1539 Fragaria x ananassa HOM05D000053 ORTHO05D000448 1.9e-06 57.0 109 30.3
Pp3c21_19160 Physcomitrium patens HOM05D001705 ORTHO05D002725 1.9e-06 57.0 142 28.2
RcHm_v2.0_Chr3g0478181 Rosa chinensis HOM05D000053 ORTHO05D000448 1.9e-06 57.0 123 30.9
Thecc.04G034100 Theobroma cacao HOM05D000071 ORTHO05D000029 1.9e-06 57.0 104 30.8
RcHm_v2.0_Chr3g0462001 Rosa chinensis HOM05D000053 ORTHO05D000448 2.4e-06 56.6 135 25.2
RcHm_v2.0_Chr3g0478331 Rosa chinensis HOM05D000053 ORTHO05D000448 2.4e-06 56.6 112 32.1
RcHm_v2.0_Chr3g0483751 Rosa chinensis HOM05D000053 ORTHO05D000448 2.4e-06 56.6 114 31.6
FvH4_6g10800 Fragaria vesca HOM05D000053 ORTHO05D000448 3.2e-06 56.2 105 30.5
Glyma.16G184800 Glycine max HOM05D000071 ORTHO05D000029 3.2e-06 56.2 106 31.1
Os02g0153100 Oryza sativa ssp. japonica HOM05D000094 ORTHO05D000455 3.2e-06 56.2 108 25.9
RcHm_v2.0_Chr5g0039851 Rosa chinensis HOM05D000053 ORTHO05D000448 3.2e-06 56.2 110 30.0
SGA_v2.0_scaffold70G23682 Striga asiatica HOM05D000094 ORTHO05D000455 3.2e-06 56.2 78 44.9
FAN05G3348 Fragaria x ananassa HOM05D000053 ORTHO05D000448 4.1e-06 55.8 128 29.7
Glyma.16G182751 Glycine max HOM05D000071 ORTHO05D000029 4.1e-06 55.8 106 32.1
Mapoly0151s0025 Marchantia polymorpha HOM05D022608 ORTHO05D030101 4.1e-06 55.8 128 26.6
RcHm_v2.0_Chr3g0478491 Rosa chinensis HOM05D000053 ORTHO05D000448 4.1e-06 55.8 122 29.5
FAN02G3909 Fragaria x ananassa HOM05D000053 ORTHO05D000448 5.4e-06 55.5 107 29.0
Glyma.16G185300 Glycine max HOM05D000071 ORTHO05D000029 5.4e-06 55.5 106 32.1
Glyma.16G187000 Glycine max HOM05D000071 ORTHO05D000029 5.4e-06 55.5 108 32.4
FAN09G1384 Fragaria x ananassa HOM05D000053 ORTHO05D000448 7.1e-06 55.1 107 29.0
FAN09G3293 Fragaria x ananassa HOM05D000053 ORTHO05D000448 7.1e-06 55.1 92 30.4
RcHm_v2.0_Chr0c32g0501521 Rosa chinensis HOM05D000053 ORTHO05D000448 7.1e-06 55.1 114 31.6
RcHm_v2.0_Chr3g0478551 Rosa chinensis HOM05D000053 ORTHO05D000448 7.1e-06 55.1 125 29.6
RcHm_v2.0_Chr3g0481181 Rosa chinensis HOM05D000053 ORTHO05D000448 7.1e-06 55.1 111 32.4
Glyma.16G185400 Glycine max HOM05D000071 ORTHO05D000029 9.2e-06 54.7 106 32.1
Glyma.16G185500 Glycine max HOM05D000071 ORTHO05D000029 9.2e-06 54.7 106 32.1
Glyma.16G186500 Glycine max HOM05D000071 ORTHO05D000029 9.2e-06 54.7 106 32.1
Glyma.16G187632 Glycine max HOM05D000071 ORTHO05D000029 9.2e-06 54.7 108 33.3
Glyma.16G187800 Glycine max HOM05D000071 ORTHO05D000029 9.2e-06 54.7 106 32.1
Glyma.16G188100 Glycine max HOM05D000071 ORTHO05D000029 9.2e-06 54.7 106 32.1
Glyma.U002100 Glycine max HOM05D000071 ORTHO05D000029 9.2e-06 54.7 106 32.1
MD05G1095600 Malus domestica HOM05D000053 ORTHO05D000448 9.2e-06 54.7 130 27.7
Os02g0157200 Oryza sativa ssp. japonica HOM05D001506 ORTHO05D000455 9.2e-06 54.7 111 27.9
RcHm_v2.0_Chr1g0316251 Rosa chinensis HOM05D000053 ORTHO05D000448 9.2e-06 54.7 109 31.2
RcHm_v2.0_Chr1g0316291 Rosa chinensis HOM05D000053 ORTHO05D000448 9.2e-06 54.7 109 31.2


User provided reference genes

Program Settings