Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0099s0054 Marchantia polymorpha HOM05D002672 ORTHO05D002887 9.6e-88 327.0 193 100.0
AagrBONN_evm.TU.Sc2ySwM_362.1458 Anthoceros agrestis HOM05D002672 ORTHO05D002887 1.8e-54 216.5 158 72.8
Nn2g15174 Nelumbo nucifera HOM05D002672 ORTHO05D002887 4.1e-54 215.3 166 72.3
ATR0697G210 Amborella trichopoda HOM05D002672 ORTHO05D002887 1.1e-51 207.2 156 69.2
SEGI_38200 Sequoiadendron giganteum HOM05D002672 ORTHO05D002887 1.9e-51 206.5 162 63.6
CDE10G0048 Ceratophyllum demersum HOM05D002672 ORTHO05D002887 1.2e-50 203.8 166 66.9
TAR623G0799 Trochodendron aralioides HOM05D002672 ORTHO05D002887 1.6e-50 203.4 160 70.0
HanXRQChr01g0024701 Helianthus annuus HOM05D002672 ORTHO05D002887 6.1e-50 201.4 160 66.9
Ciclev10021354m.g Citrus clementina HOM05D002672 ORTHO05D002887 1.0e-49 200.7 160 67.5
Prupe.7G003300 Prunus persica HOM05D002672 ORTHO05D002887 1.0e-49 200.7 167 65.9
GSVIVG01033390001 Vitis vinifera HOM05D002672 ORTHO05D002887 1.0e-49 200.7 160 68.1
Dinv37010 Davidia involucrata HOM05D002672 ORTHO05D002887 1.4e-49 200.3 160 67.5
CDE10G0711 Ceratophyllum demersum HOM05D002672 ORTHO05D002887 1.8e-49 199.9 160 66.9
Lsat_1_v5_gn_1_59540 Lactuca sativa HOM05D002672 ORTHO05D002887 5.2e-49 198.4 160 66.2
HPP92_009426 Vanilla planifolia HOM05D002672 ORTHO05D002887 5.2e-49 198.4 160 66.9
Atru.chr2.1366 Acer truncatum HOM05D002672 ORTHO05D002887 6.8e-49 198.0 163 66.3
Aa31LG2G1980 Aethionema arabicum HOM05D002672 ORTHO05D002887 6.8e-49 198.0 166 63.3
arahy.Tifrunner.gnm1.ann1.53N7TD Arachis hypogaea HOM05D002672 ORTHO05D002887 8.8e-49 197.6 173 62.4
arahy.Tifrunner.gnm1.ann1.6BXT91 Arachis hypogaea HOM05D002672 ORTHO05D002887 8.8e-49 197.6 173 62.4
Carub.0002s0957 Capsella rubella HOM05D002672 ORTHO05D002887 1.2e-48 197.2 166 62.7
Cpa.g.sc51.101 Carica papaya HOM05D002672 ORTHO05D002887 1.2e-48 197.2 168 63.7
Peaxi162Scf00003g04833 Petunia axillaris HOM05D002672 ORTHO05D002887 1.2e-48 197.2 161 66.5
AL1G64630 Arabidopsis lyrata HOM05D002672 ORTHO05D002887 1.5e-48 196.8 167 62.9
MD14G1002200 Malus domestica HOM05D002672 ORTHO05D002887 1.5e-48 196.8 165 65.5
Nitab4.5_0007223g0020 Nicotiana tabacum HOM05D002672 ORTHO05D002887 1.5e-48 196.8 161 65.8
Nitab4.5_0008228g0020 Nicotiana tabacum HOM05D002672 ORTHO05D002887 1.5e-48 196.8 161 65.8
PSO063G3245 Papaver somniferum HOM05D002672 ORTHO05D002887 2.0e-48 196.4 160 68.1
arahy.Tifrunner.gnm1.ann1.SA2BAT Arachis hypogaea HOM05D002672 ORTHO05D002887 2.6e-48 196.1 173 61.8
BcaB06g26927 Brassica carinata HOM05D002672 ORTHO05D002887 4.4e-48 195.3 167 62.3
PSO339G0446 Papaver somniferum HOM05D002672 ORTHO05D002887 4.4e-48 195.3 160 68.1
Sc19g0006480 Simmondsia chinensis HOM05D002672 ORTHO05D002887 4.4e-48 195.3 161 63.4
Sed0007674 Sechium edule HOM05D002672 ORTHO05D002887 5.7e-48 194.9 163 64.4
THA.LOC104823784 Tarenaya hassleriana HOM05D002672 ORTHO05D002887 5.7e-48 194.9 166 62.7
CsaV3_4G013320 Cucumis sativus L. HOM05D002672 ORTHO05D002887 7.5e-48 194.5 163 64.4
CARHR055500 Cardamine hirsuta HOM05D002672 ORTHO05D002887 9.7e-48 194.1 166 62.0
AT1G54390 Arabidopsis thaliana HOM05D002672 ORTHO05D002887 1.3e-47 193.7 167 62.3
Sp7g07100 Schrenkiella parvula HOM05D002672 ORTHO05D002887 1.3e-47 193.7 167 61.7
VMungo1383G1105 Vigna mungo HOM05D002672 ORTHO05D002887 1.3e-47 193.7 168 63.1
EL10Ac3g06813 Beta vulgaris HOM05D002672 ORTHO05D002887 1.7e-47 193.4 162 63.0
Rhsim03G0001100 Rhododendron simsii HOM05D002672 ORTHO05D002887 1.7e-47 193.4 161 65.2
ClCG04G005270 Citrullus lanatus HOM05D002672 ORTHO05D002887 2.8e-47 192.6 163 63.8
MELO3C008797.2 Cucumis melo HOM05D002672 ORTHO05D002887 2.8e-47 192.6 163 63.8
A04p09620 Brassica napus HOM05D002672 ORTHO05D002887 3.7e-47 192.2 168 61.3
BraA04t16621Z Brassica rapa HOM05D002672 ORTHO05D002887 3.7e-47 192.2 168 61.3
ECA285G0009 Erigeron canadensis HOM05D002672 ORTHO05D002887 3.7e-47 192.2 160 64.4
Thhalv10003462m.g Eutrema salsugineum HOM05D002672 ORTHO05D002887 3.7e-47 192.2 167 61.1
TPR.G5877 Trifolium pratense HOM05D002672 ORTHO05D002887 3.7e-47 192.2 176 60.2
FvH4_7g02040 Fragaria vesca HOM05D002672 ORTHO05D002887 6.3e-47 191.4 159 67.9
SMO116G0117 Selaginella moellendorffii HOM05D002672 ORTHO05D002887 6.3e-47 191.4 165 65.5
FAN06G3050 Fragaria x ananassa HOM05D003775 ORTHO05D004314 8.3e-47 191.0 159 67.9
Gorai.007G288500 Gossypium raimondii HOM05D002672 ORTHO05D002887 8.3e-47 191.0 171 63.2
Lj1A1137T84 Lonicera japonica HOM05D002672 ORTHO05D002887 8.3e-47 191.0 158 64.6
RcHm_v2.0_Chr3g0497201 Rosa chinensis HOM05D002672 ORTHO05D002887 8.3e-47 191.0 160 66.9
Gohir.A11G258600 Gossypium hirsutum HOM05D002672 ORTHO05D002887 1.1e-46 190.7 165 63.6
CAN.G960.51 Capsicum annuum HOM05D002672 ORTHO05D002887 1.4e-46 190.3 160 63.8
Phvul.001G109900 Phaseolus vulgaris HOM05D002672 ORTHO05D002887 1.4e-46 190.3 168 61.9
AUR62032064 Chenopodium quinoa HOM05D002672 ORTHO05D002887 1.8e-46 189.9 162 62.3
Gohir.D11G268700 Gossypium hirsutum HOM05D002672 ORTHO05D002887 1.8e-46 189.9 171 62.6
Solyc10g078520.2 Solanum lycopersicum HOM05D002672 ORTHO05D002887 1.8e-46 189.9 160 64.4
Sopen10g029170 Solanum pennellii HOM05D002672 ORTHO05D002887 1.8e-46 189.9 160 64.4
PGSC0003DMG400008367 Solanum tuberosum HOM05D002672 ORTHO05D002887 1.8e-46 189.9 160 64.4
Migut.C00472 Erythranthe guttata HOM05D002672 ORTHO05D002887 2.4e-46 189.5 164 64.0
Actinidia30558 Actinidia chinensis HOM05D002672 ORTHO05D002887 3.1e-46 189.1 160 65.0
Cc00_g05140 Coffea canephora HOM05D002672 ORTHO05D002887 4.1e-46 188.7 161 63.4
FAN26G1451 Fragaria x ananassa HOM05D002672 ORTHO05D002887 4.1e-46 188.7 158 65.8
TWI74G0403 Tripterygium wilfordii HOM05D002672 ORTHO05D002887 4.1e-46 188.7 168 61.9
FAN23G2462 Fragaria x ananassa HOM05D002672 ORTHO05D002887 5.3e-46 188.3 158 65.8
Sabra13G0052300 Salix brachista HOM05D002672 ORTHO05D002887 5.3e-46 188.3 171 59.1
Thecc.05G293600 Theobroma cacao HOM05D002672 ORTHO05D002887 5.3e-46 188.3 164 62.8
Ca_08259_v3 Cicer arietinum L. HOM05D002672 ORTHO05D002887 7.0e-46 188.0 170 60.0
Migut.D01187 Erythranthe guttata HOM05D002672 ORTHO05D002887 7.0e-46 188.0 164 63.4
MSTRG.27677 Avicennia marina HOM05D002672 ORTHO05D002887 9.1e-46 187.6 160 65.0
Lalb_Chr14g0364451 Lupinus albus HOM05D002672 ORTHO05D002887 1.2e-45 187.2 173 59.0
HanXRQChr03g0090411 Helianthus annuus HOM05D002672 ORTHO05D002887 1.6e-45 186.8 161 61.5
Manes.08G150000 Manihot esculenta HOM05D002672 ORTHO05D002887 1.6e-45 186.8 167 59.3
COL.COLO4_13611 Corchorus olitorius HOM05D002672 ORTHO05D002887 2.0e-45 186.4 165 61.8
Glyma.19G110500 Glycine max HOM05D002672 ORTHO05D002887 2.0e-45 186.4 174 59.8
AUR62032684 Chenopodium quinoa HOM05D002672 ORTHO05D002887 2.7e-45 186.0 162 60.5
DCAR_016869 Daucus carota HOM05D002672 ORTHO05D002887 2.7e-45 186.0 158 62.7
Duzib177G0497 Durio zibethinus HOM05D002672 ORTHO05D002887 2.7e-45 186.0 165 61.8
Psat3g089120 Pisum sativum HOM05D002672 ORTHO05D002887 2.7e-45 186.0 178 59.0
FvH4_1g28050 Fragaria vesca HOM05D002672 ORTHO05D002887 3.5e-45 185.7 158 65.8
Medtr7g085450 Medicago truncatula HOM05D002672 ORTHO05D002887 3.5e-45 185.7 174 59.8
Aqoxy1G00499 Aquilegia oxysepala HOM05D002672 ORTHO05D002887 5.9e-45 184.9 167 63.5
Aqoxy2G00200 Aquilegia oxysepala HOM05D002672 ORTHO05D002887 5.9e-45 184.9 167 62.9
BcaC02g09472 Brassica carinata HOM05D002672 ORTHO05D002887 1.3e-44 183.7 165 58.8
C04p43190 Brassica napus HOM05D002672 ORTHO05D002887 1.3e-44 183.7 165 58.8
BolC4t25896H Brassica oleracea HOM05D002672 ORTHO05D002887 1.3e-44 183.7 165 58.8
CiPaw.09G001400 Carya illinoinensis HOM05D002672 ORTHO05D002887 2.2e-44 183.0 176 58.5
Potri.019G033800 Populus trichocarpa HOM05D002672 ORTHO05D002887 2.9e-44 182.6 171 56.7
PGR142G0008 Punica granatum HOM05D002672 ORTHO05D002887 3.8e-44 182.2 156 65.4
Duzib106G0634 Durio zibethinus HOM05D002672 ORTHO05D002887 5.0e-44 181.8 164 60.4
Haze_11185 Corylus avellana HOM05D002672 ORTHO05D002887 6.5e-44 181.4 172 59.9
Potri.013G058800 Populus trichocarpa HOM05D002672 ORTHO05D002887 6.5e-44 181.4 166 59.0
Lj1g0022931 Lotus japonicus HOM05D002672 ORTHO05D002887 1.1e-43 180.6 171 56.7
Oeu003210.1 Olea europaea HOM05D002672 ORTHO05D002887 1.5e-43 180.3 166 60.2
CiPaw.10G000600 Carya illinoinensis HOM05D002672 ORTHO05D002887 1.9e-43 179.9 174 58.6
Actinidia22088 Actinidia chinensis HOM05D002672 ORTHO05D002887 2.5e-43 179.5 159 62.9
Haze_11190 Corylus avellana HOM05D002672 ORTHO05D002887 3.2e-43 179.1 172 59.3
TWI77G0420 Tripterygium wilfordii HOM05D002672 ORTHO05D002887 5.5e-43 178.3 169 58.0
DCAR_009678 Daucus carota HOM05D002672 ORTHO05D002887 1.6e-42 176.8 161 60.9
vmacro12572 Vaccinium macrocarpon HOM05D002672 ORTHO05D002887 1.6e-42 176.8 170 59.4
Sabra19G0041700 Salix brachista HOM05D002672 ORTHO05D002887 2.7e-42 176.0 171 54.4
CSS0007216 Camellia sinensis var. sinensis HOM05D002672 ORTHO05D002887 1.0e-41 174.1 204 52.0
Os03g0748200 Oryza sativa ssp. japonica HOM05D002672 ORTHO05D002887 1.8e-41 173.3 165 55.8
PGR042G0488 Punica granatum HOM05D002672 ORTHO05D002887 6.8e-41 171.4 174 53.4
Pp3c17_17740 Physcomitrium patens HOM05D002672 ORTHO05D002887 8.8e-41 171.0 160 58.1
DCAR_013691 Daucus carota HOM05D002672 ORTHO05D002887 1.2e-40 170.6 165 58.2
CANSAT78G2220 Cannabis sativa HOM05D002672 ORTHO05D002887 9.8e-40 167.5 199 52.8
Zm00001eb057160 Zea mays HOM05D002672 ORTHO05D002887 3.7e-39 165.6 164 54.3
Eucgr.A02091 Eucalyptus grandis HOM05D002672 ORTHO05D002887 7.0e-38 161.4 164 54.3
SGA_v2.0_scaffold59G20726 Striga asiatica HOM05D002672 ORTHO05D002887 5.9e-37 158.3 143 62.9
CBR_g34558 Chara braunii HOM05D002672 ORTHO05D002887 1.5e-35 153.7 158 56.3
SEGI_33253 Sequoiadendron giganteum HOM05D002672 ORTHO05D002887 3.7e-31 139.0 103 68.0
QL07p020095 Quercus lobata HOM05D002672 ORTHO05D002887 1.0e-28 131.0 149 51.7
TAR254G0001 Trochodendron aralioides HOM05D002672 ORTHO05D002887 2.9e-28 129.4 103 66.0
Oeu003208.1 Olea europaea HOM05D002672 ORTHO05D002887 1.1e-27 127.5 120 60.0
Oeu003209.1 Olea europaea HOM05D002672 ORTHO05D002887 1.5e-27 127.1 111 63.1
FAN03G1589 Fragaria x ananassa HOM05D002672 ORTHO05D002887 2.5e-27 126.3 119 63.0
Haze_19412 Corylus avellana HOM05D003349 ORTHO05D003898 1.2e-21 107.5 159 45.3
CANSAT78G2266 Cannabis sativa HOM05D002672 ORTHO05D002887 1.3e-20 104.0 93 65.6
FAN10G0774 Fragaria x ananassa HOM05D002672 ORTHO05D002887 7.8e-13 78.2 140 43.6
Glyma.16G041900 Glycine max HOM05D002672 ORTHO05D002887 4.0e-09 65.9 57 59.6
FAN01G0886 Fragaria x ananassa HOM05D003775 ORTHO05D004314 1.5e-08 63.9 56 60.7
SEGI_10634 Sequoiadendron giganteum HOM05D002672 ORTHO05D002887 4.4e-08 62.4 119 31.9
Pp3c17_6960 Physcomitrium patens HOM05D002672 ORTHO05D002887 9.9e-08 61.2 116 29.3
CBR_g3046 Chara braunii HOM05D002672 ORTHO05D002887 1.3e-07 60.8 116 34.5
CAN.G1588.4 Capsicum annuum HOM05D002672 ORTHO05D002887 8.4e-07 58.2 138 29.7
Cre07.g357650 Chlamydomonas reinhardtii HOM05D002672 ORTHO05D044151 8.4e-07 58.2 117 29.9
Aqoxy2G03816 Aquilegia oxysepala HOM05D002672 ORTHO05D002887 1.4e-06 57.4 119 31.1
SHI00537 Sapria himalayana HOM05D002672 ORTHO05D002887 1.4e-06 57.4 70 45.7
Sed0026388 Sechium edule HOM05D002672 ORTHO05D002887 2.4e-06 56.6 116 31.0
CBR_g51242 Chara braunii HOM05D002672 ORTHO05D002887 4.1e-06 55.8 136 30.1
Nitab4.5_0000436g0140 Nicotiana tabacum HOM05D002672 ORTHO05D002887 4.1e-06 55.8 116 29.3
Nitab4.5_0003136g0010 Nicotiana tabacum HOM05D002672 ORTHO05D002887 4.1e-06 55.8 116 29.3
Solyc09g091190.3 Solanum lycopersicum HOM05D002672 ORTHO05D002887 4.1e-06 55.8 116 29.3
Sopen09g034160 Solanum pennellii HOM05D002672 ORTHO05D002887 4.1e-06 55.8 116 29.3
PGSC0003DMG400011588 Solanum tuberosum HOM05D002672 ORTHO05D002887 4.1e-06 55.8 116 29.3
Hma1.2p1_0903F.1_g234970 Hydrangea macrophylla HOM05D002672 ORTHO05D002887 7.1e-06 55.1 116 31.9
SMO358G0727 Selaginella moellendorffii HOM05D002672 ORTHO05D002887 7.1e-06 55.1 119 31.1
ClCG05G003690 Citrullus lanatus HOM05D002672 ORTHO05D002887 9.2e-06 54.7 116 30.2
Gohir.D02G035300 Gossypium hirsutum HOM05D002672 ORTHO05D002887 9.2e-06 54.7 116 29.3


User provided reference genes

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