Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 7.0e-47 190.3 96 100.0
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 5.4e-23 110.9 83 62.7
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 3.5e-22 108.2 83 61.4
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 8.1e-19 97.1 67 59.7
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 2.3e-18 95.5 68 61.8
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 4.0e-18 94.7 67 59.7
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 1.2e-17 93.2 65 64.6
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 1.5e-17 92.8 72 62.5
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 1.5e-17 92.8 65 66.2
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 2.0e-17 92.4 75 60.0
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 2.0e-17 92.4 63 66.7
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 2.0e-17 92.4 75 61.3
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 2.0e-17 92.4 85 55.3
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 2.0e-17 92.4 84 54.8
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 2.6e-17 92.0 63 66.7
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 2.6e-17 92.0 75 61.3
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 4.4e-17 91.3 75 58.7
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 4.4e-17 91.3 69 65.2
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 5.8e-17 90.9 84 54.8
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 9.9e-17 90.1 75 60.0
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 9.9e-17 90.1 63 66.7
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 1.3e-16 89.7 75 60.0
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 1.3e-16 89.7 75 60.0
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 1.3e-16 89.7 72 62.5
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 1.7e-16 89.4 63 65.1
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 1.7e-16 89.4 94 48.9
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 1.7e-16 89.4 63 63.5
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 1.7e-16 89.4 74 56.8
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 2.2e-16 89.0 85 52.9
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 2.2e-16 89.0 62 67.7
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 2.9e-16 88.6 63 63.5
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 2.9e-16 88.6 63 63.5
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.9e-16 88.6 65 63.1
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.9e-16 88.6 65 63.1
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 2.9e-16 88.6 65 63.1
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 2.9e-16 88.6 63 66.7
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 2.9e-16 88.6 74 59.5
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 2.9e-16 88.6 77 53.2
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 2.9e-16 88.6 62 64.5
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 3.7e-16 88.2 63 63.5
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 3.7e-16 88.2 63 63.5
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 3.7e-16 88.2 61 65.6
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 3.7e-16 88.2 61 65.6
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 3.7e-16 88.2 74 59.5
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 3.7e-16 88.2 63 66.7
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 3.7e-16 88.2 63 63.5
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 4.9e-16 87.8 70 60.0
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 4.9e-16 87.8 76 56.6
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 6.4e-16 87.4 73 61.6
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 6.4e-16 87.4 63 63.5
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 6.4e-16 87.4 65 64.6
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 6.4e-16 87.4 65 61.5
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 6.4e-16 87.4 63 63.5
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 6.4e-16 87.4 63 63.5
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 6.4e-16 87.4 72 59.7
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 8.3e-16 87.0 65 63.1
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 8.3e-16 87.0 63 63.5
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 8.3e-16 87.0 63 61.9
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 8.3e-16 87.0 63 65.1
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 8.3e-16 87.0 63 65.1
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 8.3e-16 87.0 62 64.5
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 8.3e-16 87.0 77 51.9
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 1.1e-15 86.7 61 65.6
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 1.1e-15 86.7 65 63.1
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 1.1e-15 86.7 62 64.5
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 1.1e-15 86.7 62 64.5
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 1.1e-15 86.7 69 56.5
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 1.1e-15 86.7 65 60.0
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.1e-15 86.7 78 53.8
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 1.4e-15 86.3 65 60.0
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 1.4e-15 86.3 63 63.5
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.4e-15 86.3 65 61.5
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 1.4e-15 86.3 63 61.9
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 1.4e-15 86.3 61 65.6
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 1.9e-15 85.9 72 58.3
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 1.9e-15 85.9 72 59.7
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 1.9e-15 85.9 61 67.2
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 1.9e-15 85.9 61 67.2
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 1.9e-15 85.9 72 59.7
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 1.9e-15 85.9 63 63.5
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 1.9e-15 85.9 63 60.3
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 1.9e-15 85.9 63 60.3
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 2.4e-15 85.5 62 61.3
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 2.4e-15 85.5 63 60.3
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 2.4e-15 85.5 63 58.7
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 2.4e-15 85.5 62 64.5
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 3.2e-15 85.1 72 58.3
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 4.1e-15 84.7 63 61.9
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 4.1e-15 84.7 60 65.0
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 4.1e-15 84.7 63 60.3
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 4.1e-15 84.7 62 62.9
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 4.1e-15 84.7 70 61.4
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 4.1e-15 84.7 63 60.3
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 4.1e-15 84.7 63 60.3
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 4.1e-15 84.7 63 58.7
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 4.1e-15 84.7 68 57.4
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 4.1e-15 84.7 74 55.4
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 5.4e-15 84.3 67 58.2
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 5.4e-15 84.3 64 62.5
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 5.4e-15 84.3 62 62.9
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 5.4e-15 84.3 63 61.9
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 5.4e-15 84.3 63 61.9
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 9.2e-15 83.6 63 61.9
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 1.2e-14 83.2 63 58.7
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 1.2e-14 83.2 68 58.8
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 1.2e-14 83.2 65 60.0
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 1.6e-14 82.8 63 63.5
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 1.6e-14 82.8 63 60.3
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.6e-14 82.8 63 60.3
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 1.6e-14 82.8 62 59.7
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 1.6e-14 82.8 61 60.7
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 2.1e-14 82.4 61 63.9
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 2.1e-14 82.4 63 58.7
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 2.1e-14 82.4 62 61.3
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 2.7e-14 82.0 63 61.9
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 3.5e-14 81.6 63 60.3
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 3.5e-14 81.6 61 60.7
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 4.6e-14 81.3 68 57.4
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 4.6e-14 81.3 62 58.1
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 7.8e-14 80.5 61 62.3
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 1.3e-13 79.7 63 57.1
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 1.7e-13 79.3 63 55.6
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 6.6e-13 77.4 75 54.7
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 6.6e-13 77.4 75 54.7
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 6.6e-13 77.4 63 55.6
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 1.1e-12 76.6 58 56.9
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 1.1e-12 76.6 64 54.7
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.1e-12 76.6 65 52.3
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 1.1e-12 76.6 68 52.9
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 1.5e-12 76.3 62 61.3
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 1.9e-12 75.9 63 52.4
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 1.9e-12 75.9 61 55.7
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 2.5e-12 75.5 63 54.0
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 3.3e-12 75.1 62 59.7
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 3.3e-12 75.1 62 59.7
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 3.3e-12 75.1 65 50.8
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 3.3e-12 75.1 62 59.7
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 3.3e-12 75.1 62 59.7
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 4.3e-12 74.7 72 55.6
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 9.6e-12 73.6 60 56.7
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 4.7e-11 71.2 84 47.6
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 8.1e-11 70.5 52 59.6
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 8.1e-11 70.5 61 57.4
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 1.8e-10 69.3 57 57.9
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 5.2e-10 67.8 74 51.4
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.2e-09 66.6 51 58.8
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 4.4e-09 64.7 51 56.9
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 5.8e-09 64.3 48 60.4
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 1.7e-08 62.8 119 38.7
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 4.9e-08 61.2 57 52.6
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.9e-07 59.3 45 57.8


User provided reference genes

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