Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0094s0054 Marchantia polymorpha HOM05D005308 ORTHO05D006494 0.0e+00 1694.9 871 100.0
Pp3c20_21760 Physcomitrium patens HOM05D005308 ORTHO05D006494 1.5e-151 541.2 660 46.8
Pp3c10_23930 Physcomitrium patens HOM05D005308 ORTHO05D006494 2.2e-147 527.3 663 45.7
AagrBONN_evm.TU.Sc2ySwM_228.2792 Anthoceros agrestis HOM05D005308 ORTHO05D006494 1.7e-136 491.1 567 46.9
SMO361G0791 Selaginella moellendorffii HOM05D005308 ORTHO05D006494 6.0e-121 439.5 431 51.0
SEGI_39092 Sequoiadendron giganteum HOM05D005308 ORTHO05D006494 4.0e-109 400.2 549 43.7
PSO782G4716 Papaver somniferum HOM05D005308 ORTHO05D006494 2.1e-102 377.9 548 40.1
Cfa018137 Carpinus fangiana HOM05D005308 ORTHO05D006494 6.9e-101 372.9 592 38.2
PSO063G3485 Papaver somniferum HOM05D005308 ORTHO05D006494 2.6e-100 370.9 548 40.0
Haze_17987 Corylus avellana HOM05D005308 ORTHO05D006494 1.0e-99 369.0 609 37.1
Nn3g19273 Nelumbo nucifera HOM05D005308 ORTHO05D006494 1.3e-99 368.6 471 43.5
TAR376G0813 Trochodendron aralioides HOM05D005308 ORTHO05D006494 9.3e-98 362.5 453 45.9
ATR0829G103 Amborella trichopoda HOM05D005308 ORTHO05D006494 3.5e-97 360.5 539 39.3
Aqoxy3G02057 Aquilegia oxysepala HOM05D005308 ORTHO05D006494 7.9e-97 359.4 559 39.4
Lj4P784T41 Lonicera japonica HOM05D005308 ORTHO05D006494 1.8e-96 358.2 580 38.4
Phvul.001G015400 Phaseolus vulgaris HOM05D005308 ORTHO05D006494 3.0e-96 357.5 686 34.7
QL02p007937 Quercus lobata HOM05D005308 ORTHO05D006494 3.9e-96 357.1 571 38.2
Glyma.14G076200 Glycine max HOM05D005308 ORTHO05D006494 5.1e-96 356.7 565 38.1
Sed0011840 Sechium edule HOM05D005308 ORTHO05D006494 6.7e-96 356.3 568 37.9
VMungo0647G0443 Vigna mungo HOM05D005308 ORTHO05D006494 6.7e-96 356.3 575 37.4
Lj5g0021582 Lotus japonicus HOM05D005308 ORTHO05D006494 2.5e-95 354.4 565 37.9
Sed0021548 Sechium edule HOM05D005308 ORTHO05D006494 2.5e-95 354.4 568 38.2
Dinv39406 Davidia involucrata HOM05D005308 ORTHO05D006494 3.3e-95 354.0 513 40.5
CiPaw.15G075700 Carya illinoinensis HOM05D005308 ORTHO05D006494 4.3e-95 353.6 581 37.9
CDE11G0691 Ceratophyllum demersum HOM05D005308 ORTHO05D006494 5.7e-95 353.2 528 40.3
CsaV3_2G028600 Cucumis sativus L. HOM05D005308 ORTHO05D006494 9.7e-95 352.4 559 37.0
Ca_13346_v3 Cicer arietinum L. HOM05D005308 ORTHO05D006494 2.2e-94 351.3 629 36.4
Potri.002G262900 Populus trichocarpa HOM05D005308 ORTHO05D006494 3.7e-94 350.5 605 37.2
Glyma.17G249600 Glycine max HOM05D005308 ORTHO05D006494 6.3e-94 349.7 570 37.5
Medtr1g022045 Medicago truncatula HOM05D005308 ORTHO05D006494 1.4e-93 348.6 623 34.8
Sabra02G0199700 Salix brachista HOM05D005308 ORTHO05D006494 1.8e-93 348.2 610 36.9
Duzib041G0136 Durio zibethinus HOM05D005308 ORTHO05D006494 2.4e-93 347.8 563 38.2
Duzib093G0415 Durio zibethinus HOM05D005308 ORTHO05D006494 2.4e-93 347.8 564 37.8
Hma1.2p1_0077F.1_g039700 Hydrangea macrophylla HOM05D005308 ORTHO05D006494 2.4e-93 347.8 641 35.9
GSVIVG01009686001 Vitis vinifera HOM05D005308 ORTHO05D006494 3.1e-93 347.4 564 38.1
MELO3C010930.2 Cucumis melo HOM05D005308 ORTHO05D006494 5.3e-93 346.7 569 37.8
TPR.G29756 Trifolium pratense HOM05D005308 ORTHO05D006494 5.3e-93 346.7 570 36.8
Duzib116G0819 Durio zibethinus HOM05D005308 ORTHO05D006494 6.9e-93 346.3 582 37.5
Potri.014G180900 Populus trichocarpa HOM05D005308 ORTHO05D006494 9.0e-93 345.9 600 37.3
CsaV3_2G028560 Cucumis sativus L. HOM05D005308 ORTHO05D006494 1.2e-92 345.5 568 37.3
MD15G1030000 Malus domestica HOM05D005308 ORTHO05D006494 1.2e-92 345.5 552 38.6
Psat6g007480 Pisum sativum HOM05D005308 ORTHO05D006494 2.0e-92 344.7 564 36.3
RcHm_v2.0_Chr6g0300791 Rosa chinensis HOM05D005308 ORTHO05D006494 2.6e-92 344.4 562 37.7
ClCG08G015210 Citrullus lanatus HOM05D005308 ORTHO05D006494 3.4e-92 344.0 568 37.0
ClCG08G015240 Citrullus lanatus HOM05D005308 ORTHO05D006494 3.4e-92 344.0 568 37.0
Lalb_Chr22g0355491 Lupinus albus HOM05D005308 ORTHO05D006494 3.4e-92 344.0 596 36.2
Nitab4.5_0003783g0070 Nicotiana tabacum HOM05D005308 ORTHO05D006494 3.4e-92 344.0 563 36.2
Thecc.08G024400 Theobroma cacao HOM05D005308 ORTHO05D006494 4.5e-92 343.6 564 38.5
Solyc04g080180.1 Solanum lycopersicum HOM05D005308 ORTHO05D006494 5.9e-92 343.2 559 37.7
Nitab4.5_0000110g0380 Nicotiana tabacum HOM05D005308 ORTHO05D006494 7.7e-92 342.8 563 36.6
Manes.05G161700 Manihot esculenta HOM05D005308 ORTHO05D006494 1.0e-91 342.4 563 36.9
FvH4_2g39960 Fragaria vesca HOM05D005308 ORTHO05D006494 2.9e-91 340.9 571 37.3
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 3.8e-91 340.5 584 36.8
MBI04_g27271_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 3.8e-91 340.5 547 38.2
Prupe.1G381500 Prunus persica HOM05D005308 ORTHO05D006494 5.0e-91 340.1 602 35.0
PGR031G2270 Punica granatum HOM05D005308 ORTHO05D006494 8.5e-91 339.3 564 36.2
vmacro04517 Vaccinium macrocarpon HOM05D005308 ORTHO05D006494 1.1e-90 339.0 570 37.5
Cc03_g06460 Coffea canephora HOM05D005308 ORTHO05D006494 1.4e-90 338.6 541 39.0
Gohir.D05G198500 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.4e-90 338.6 548 36.9
Gorai.009G203600 Gossypium raimondii HOM05D005308 ORTHO05D006494 1.4e-90 338.6 548 37.2
FAN15G3722 Fragaria x ananassa HOM05D005308 ORTHO05D006494 3.2e-90 337.4 571 36.8
PGSC0003DMG400005144 Solanum tuberosum HOM05D005308 ORTHO05D006494 3.2e-90 337.4 565 36.8
Sc02g0006300 Simmondsia chinensis HOM05D005308 ORTHO05D006494 9.4e-90 335.9 543 37.9
Sopen04g033770 Solanum pennellii HOM05D005308 ORTHO05D006494 9.4e-90 335.9 629 34.8
FAN27G1201 Fragaria x ananassa HOM05D005308 ORTHO05D006494 1.2e-89 335.5 561 36.7
Rhsim07G0237100 Rhododendron simsii HOM05D005308 ORTHO05D006494 1.6e-89 335.1 671 33.8
Gohir.A06G010900 Gossypium hirsutum HOM05D005308 ORTHO05D006494 2.7e-89 334.3 554 35.9
Gohir.A05G195300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 4.6e-89 333.6 560 37.1
Gorai.010G011100 Gossypium raimondii HOM05D005308 ORTHO05D006494 4.6e-89 333.6 554 35.9
Gohir.D06G008300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.0e-88 332.4 554 35.7
Eucgr.F01908 Eucalyptus grandis HOM05D005308 ORTHO05D006494 1.4e-88 332.0 552 35.9
MD08G1033400 Malus domestica HOM05D005308 ORTHO05D006494 5.1e-88 330.1 595 36.1
EL10Ac9g23018 Beta vulgaris HOM05D005308 ORTHO05D006494 6.7e-88 329.7 528 38.1
Migut.I00006 Erythranthe guttata HOM05D005308 ORTHO05D006494 6.7e-88 329.7 593 36.3
Ciclev10000534m.g Citrus clementina HOM05D005308 ORTHO05D006494 1.1e-87 328.9 566 36.2
Atru.chr13.513 Acer truncatum HOM05D005308 ORTHO05D006494 1.5e-87 328.6 562 37.0
Atru.chr8.2603 Acer truncatum HOM05D005308 ORTHO05D006494 1.5e-87 328.6 561 37.1
THA.LOC104813841 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 2.5e-87 327.8 551 36.3
THA.LOC104806374 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 1.7e-86 325.1 535 35.7
DCAR_019524 Daucus carota HOM05D005308 ORTHO05D006494 2.2e-86 324.7 586 35.7
CAN.G1126.42 Capsicum annuum HOM05D005308 ORTHO05D006494 8.2e-86 322.8 573 34.9
AUR62032897 Chenopodium quinoa HOM05D005308 ORTHO05D006494 6.9e-85 319.7 525 36.6
Sp5g30270 Schrenkiella parvula HOM05D005308 ORTHO05D006494 6.9e-85 319.7 594 34.7
Oeu052497.1 Olea europaea HOM05D005308 ORTHO05D006494 2.6e-84 317.8 566 34.6
AT1G75140 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 3.4e-84 317.4 585 34.2
Peaxi162Scf00690g00113 Petunia axillaris HOM05D005308 ORTHO05D006494 1.0e-83 315.8 534 35.4
MSTRG.11457 Avicennia marina HOM05D005308 ORTHO05D006494 1.3e-83 315.5 631 33.8
TWI73G1022 Tripterygium wilfordii HOM05D005308 ORTHO05D006494 1.3e-83 315.5 555 36.4
SalBow5G1122 Salvia bowleyana HOM05D005308 ORTHO05D006494 8.5e-83 312.8 562 34.9
Ah.01g011450 Amaranthus hybridus HOM05D005308 ORTHO05D006494 1.4e-82 312.0 665 33.5
AL2G35040 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 1.4e-82 312.0 588 33.8
CARHR068470 Cardamine hirsuta HOM05D005308 ORTHO05D006494 1.4e-82 312.0 583 34.0
AL1G31960 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 2.5e-82 311.2 612 33.2
Carub.0001s1896 Capsella rubella HOM05D005308 ORTHO05D006494 9.4e-82 309.3 575 34.1
Carub.0002s2195 Capsella rubella HOM05D005308 ORTHO05D006494 9.4e-82 309.3 561 34.0
Thhalv10018268m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 9.4e-82 309.3 631 33.8
AT1G19370 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 2.1e-81 308.1 581 33.4
Aa31LG7G4080 Aethionema arabicum HOM05D005308 ORTHO05D006494 4.7e-81 307.0 503 36.2
CARHR019960 Cardamine hirsuta HOM05D005308 ORTHO05D006494 4.7e-81 307.0 544 34.7
AUR62017754 Chenopodium quinoa HOM05D005308 ORTHO05D006494 6.1e-81 306.6 510 36.9
Sp1g17280 Schrenkiella parvula HOM05D005308 ORTHO05D006494 7.9e-81 306.2 595 34.1
Oeu016389.1 Olea europaea HOM05D005308 ORTHO05D006494 1.4e-80 305.4 579 33.7
BraA06t24665Z Brassica rapa HOM05D005308 ORTHO05D006494 3.0e-80 304.3 547 34.2
A06p15530 Brassica napus HOM05D005308 ORTHO05D006494 5.1e-80 303.5 547 34.2
Aa31LG4G5330 Aethionema arabicum HOM05D005308 ORTHO05D006494 8.8e-80 302.8 430 37.7
BcaB02g06995 Brassica carinata HOM05D005308 ORTHO05D006494 8.8e-80 302.8 465 37.2
C06p32820 Brassica napus HOM05D005308 ORTHO05D006494 8.8e-80 302.8 465 37.2
Lsat_1_v5_gn_5_29021 Lactuca sativa HOM05D005308 ORTHO05D006494 1.5e-79 302.0 554 35.0
A07p29040 Brassica napus HOM05D005308 ORTHO05D006494 2.6e-79 301.2 478 36.4
DCAR_020966 Daucus carota HOM05D005308 ORTHO05D006494 2.6e-79 301.2 524 35.9
BolC6t38403H Brassica oleracea HOM05D005308 ORTHO05D006494 4.4e-79 300.4 530 35.3
BolC5t30482H Brassica oleracea HOM05D005308 ORTHO05D006494 9.7e-79 299.3 540 33.7
BraA07t30544Z Brassica rapa HOM05D005308 ORTHO05D006494 1.3e-78 298.9 478 36.6
BcaB07g31957 Brassica carinata HOM05D005308 ORTHO05D006494 1.1e-77 295.8 456 36.8
HanXRQChr05g0151851 Helianthus annuus HOM05D005308 ORTHO05D006494 1.8e-77 295.0 616 32.5
MSTRG.23132 Avicennia marina HOM05D005308 ORTHO05D006494 1.0e-75 289.3 583 33.6
CSS0027115 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 1.3e-75 288.9 487 37.2
SHI08167 Sapria himalayana HOM05D005308 ORTHO05D006494 3.8e-75 287.3 436 38.3
SGA_v2.0_scaffold90G27910 Striga asiatica HOM05D005308 ORTHO05D006494 2.5e-74 284.6 570 33.5
MBI04_g21134_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 5.5e-74 283.5 529 35.2
Zm00001eb269050 Zea mays HOM05D005308 ORTHO05D006494 1.2e-73 282.3 445 38.2
Os06g0115200 Oryza sativa ssp. japonica HOM05D005308 ORTHO05D006494 2.1e-73 281.6 443 38.4
BcaB02g07009 Brassica carinata HOM05D005308 ORTHO05D006494 5.2e-72 276.9 610 32.6
ECA246G5303 Erigeron canadensis HOM05D005308 ORTHO05D006494 2.0e-71 275.0 576 31.1
CSS0028044 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 4.1e-69 267.3 488 37.3
Thhalv10009294m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 7.2e-66 256.5 594 30.8
C05p17770 Brassica napus HOM05D005308 ORTHO05D006494 9.5e-50 203.0 293 37.9
BcaNung07297 Brassica carinata HOM05D005308 ORTHO05D006494 8.3e-46 189.9 246 40.2
Actinidia38015 Actinidia chinensis HOM05D005308 ORTHO05D006494 2.5e-42 178.3 532 29.1
unitig_0.g1436 Utricularia gibba HOM05D005308 ORTHO05D006494 1.2e-41 176.0 285 38.2
BcaB02g07002 Brassica carinata HOM05D005308 ORTHO05D006494 3.6e-41 174.5 251 39.4
MCO12G330 Micromonas commoda HOM05D005308 ORTHO05D006494 1.7e-38 165.6 557 27.1
BcaNung07223 Brassica carinata HOM05D005308 ORTHO05D006494 1.5e-34 152.5 296 31.8
A07p29060 Brassica napus HOM05D005308 ORTHO05D006494 1.0e-27 129.8 130 44.6
Mapoly0156s0008 Marchantia polymorpha HOM05D001978 ORTHO05D003036 3.3e-26 124.8 111 61.3
unitig_0.g1437 Utricularia gibba HOM05D005308 ORTHO05D006494 1.6e-17 95.9 229 31.9
CBR_g49554 Chara braunii HOM05D005308 ORTHO05D006494 1.6e-12 79.3 152 35.5
Pp3c2_17710 Physcomitrium patens HOM05D001978 ORTHO05D003036 8.1e-09 67.0 111 36.0
ECA248G1610 Erigeron canadensis HOM05D001978 ORTHO05D003036 1.1e-08 66.6 184 32.1
Pp3c1_29660 Physcomitrium patens HOM05D001978 ORTHO05D003036 1.4e-08 66.2 112 37.5
Peaxi162Scf01108g00213 Petunia axillaris HOM05D001978 ORTHO05D003036 6.9e-08 63.9 125 36.0
CAN.G909.18 Capsicum annuum HOM05D001978 ORTHO05D003036 7.6e-07 60.5 123 33.3
Cre13.g578600 Chlamydomonas reinhardtii HOM05D005308 ORTHO05D141880 7.6e-07 60.5 147 28.6
HanXRQChr06g0183381 Helianthus annuus HOM05D001978 ORTHO05D003036 1.3e-06 59.7 123 35.8
ECA236G3334 Erigeron canadensis HOM05D001978 ORTHO05D003036 2.2e-06 58.9 126 36.5
Lsat_1_v5_gn_1_101701 Lactuca sativa HOM05D001978 ORTHO05D003036 2.2e-06 58.9 184 30.4
CSS0034960 Camellia sinensis var. sinensis HOM05D001978 ORTHO05D003036 2.9e-06 58.5 113 36.3
Lj9A642T48 Lonicera japonica HOM05D001978 ORTHO05D003036 3.8e-06 58.2 123 31.7
VMungo1127G0961 Vigna mungo HOM05D001978 ORTHO05D003036 3.8e-06 58.2 125 34.4
Hma1.2p1_0685F.1_g203310 Hydrangea macrophylla HOM05D001978 ORTHO05D003036 4.9e-06 57.8 113 36.3
Lsat_1_v5_gn_4_32040 Lactuca sativa HOM05D001978 ORTHO05D003036 6.4e-06 57.4 123 35.0
Glyma.09G226400 Glycine max HOM05D001978 ORTHO05D003036 8.4e-06 57.0 125 33.6
HanXRQChr01g0015661 Helianthus annuus HOM05D001978 ORTHO05D003036 8.4e-06 57.0 184 28.8


User provided reference genes

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