Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 0.0e+00 1590.9 802 100.0
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 9.6e-57 226.1 746 31.2
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 2.4e-55 221.5 784 31.6
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.5e-54 218.8 740 31.5
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 3.9e-50 204.1 788 29.3
SMO367G1253 Selaginella moellendorffii HOM05D005715 ORTHO05D007160 5.3e-31 140.6 486 27.2
AagrBONN_evm.TU.Sc2ySwM_362.2955 Anthoceros agrestis HOM05D005715 ORTHO05D007160 1.8e-23 115.5 431 31.6
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 1.7e-21 109.0 166 36.7
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 1.7e-21 109.0 299 31.4
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 6.5e-21 107.1 172 36.0
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 8.5e-21 106.7 154 39.6
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 8.5e-21 106.7 168 35.7
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 1.5e-20 105.9 156 39.1
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 1.9e-20 105.5 162 35.2
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 4.2e-20 104.4 167 34.7
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 7.2e-20 103.6 175 34.3
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 2.1e-19 102.1 154 36.4
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 2.7e-19 101.7 299 30.8
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 6.1e-19 100.5 158 36.7
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 6.1e-19 100.5 181 38.7
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.0e-18 99.8 159 38.4
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 1.0e-18 99.8 159 38.4
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 1.4e-18 99.4 158 36.1
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 1.4e-18 99.4 171 37.4
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.4e-18 99.4 171 37.4
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 1.4e-18 99.4 153 35.9
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 1.8e-18 99.0 154 35.7
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 2.3e-18 98.6 171 38.0
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 3.0e-18 98.2 164 36.0
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 3.0e-18 98.2 159 37.7
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 4.0e-18 97.8 157 38.2
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 4.0e-18 97.8 157 38.2
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 4.0e-18 97.8 161 37.9
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 8.8e-18 96.7 153 38.6
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 8.8e-18 96.7 166 38.6
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 8.8e-18 96.7 166 39.2
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 8.8e-18 96.7 169 34.9
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 1.1e-17 96.3 162 37.7
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.1e-17 96.3 166 38.6
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 1.1e-17 96.3 170 34.1
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 1.5e-17 95.9 159 35.8
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 1.5e-17 95.9 172 34.9
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 1.5e-17 95.9 172 34.9
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 1.5e-17 95.9 156 34.6
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 1.5e-17 95.9 171 30.4
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 2.0e-17 95.5 154 35.7
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 2.6e-17 95.1 175 34.3
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 3.3e-17 94.7 168 33.9
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 3.3e-17 94.7 167 35.3
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 4.4e-17 94.4 159 35.8
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 4.4e-17 94.4 159 35.8
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 4.4e-17 94.4 159 35.8
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 4.4e-17 94.4 132 38.6
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 4.4e-17 94.4 154 37.7
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 5.7e-17 94.0 159 35.8
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 5.7e-17 94.0 154 35.1
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 5.7e-17 94.0 156 34.0
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 7.5e-17 93.6 154 35.7
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 7.5e-17 93.6 157 34.4
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 9.7e-17 93.2 161 37.3
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 1.3e-16 92.8 131 42.7
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 1.3e-16 92.8 159 40.3
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 1.3e-16 92.8 166 32.5
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 1.7e-16 92.4 155 35.5
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 2.2e-16 92.0 153 36.6
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 2.2e-16 92.0 160 36.9
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 2.2e-16 92.0 158 34.8
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 2.8e-16 91.7 173 32.4
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 3.7e-16 91.3 163 34.4
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 3.7e-16 91.3 157 35.7
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 6.3e-16 90.5 129 40.3
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 8.2e-16 90.1 156 35.9
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 8.2e-16 90.1 132 37.1
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 8.2e-16 90.1 162 35.8
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 8.2e-16 90.1 169 33.1
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 1.1e-15 89.7 163 34.4
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 1.1e-15 89.7 155 36.1
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 1.4e-15 89.4 130 40.8
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 1.8e-15 89.0 163 35.6
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 1.8e-15 89.0 158 34.2
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 2.4e-15 88.6 179 31.3
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 2.4e-15 88.6 158 35.4
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 2.4e-15 88.6 159 34.6
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 3.1e-15 88.2 165 35.8
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 3.1e-15 88.2 153 35.9
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 4.1e-15 87.8 164 34.1
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 4.1e-15 87.8 175 32.0
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 5.3e-15 87.4 169 31.4
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 5.3e-15 87.4 134 38.8
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 7.0e-15 87.0 131 38.9
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 9.1e-15 86.7 164 33.5
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 1.2e-14 86.3 155 32.3
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 1.2e-14 86.3 164 32.9
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 1.2e-14 86.3 131 37.4
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 1.6e-14 85.9 87 48.3
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 2.0e-14 85.5 157 35.7
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 3.5e-14 84.7 164 32.3
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 3.5e-14 84.7 182 30.8
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 3.5e-14 84.7 133 36.1
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 5.9e-14 84.0 155 31.0
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 5.9e-14 84.0 166 32.5
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 5.9e-14 84.0 135 39.3
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 7.7e-14 83.6 162 32.7
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 7.7e-14 83.6 123 39.0
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 1.3e-13 82.8 161 32.9
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 2.2e-13 82.0 164 32.3
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 2.2e-13 82.0 133 37.6
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 2.9e-13 81.6 141 38.3
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 2.9e-13 81.6 141 38.3
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 5.0e-13 80.9 126 37.3
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 6.5e-13 80.5 155 32.9
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 1.1e-12 79.7 119 34.5
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 1.1e-12 79.7 139 38.1
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.5e-12 79.3 146 34.9
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 1.5e-12 79.3 164 28.7
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 1.9e-12 79.0 134 37.3
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 1.9e-12 79.0 150 35.3
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 2.5e-12 78.6 158 34.8
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 2.5e-12 78.6 139 37.4
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 3.2e-12 78.2 134 37.3
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 3.2e-12 78.2 139 38.1
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 4.2e-12 77.8 166 28.9
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 5.5e-12 77.4 81 45.7
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 7.2e-12 77.0 137 34.3
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 7.2e-12 77.0 129 38.0
MBI11_g00913_MAGBIO Magnolia biondii HOM05D001735 ORTHO05D001640 9.4e-12 76.6 163 33.7
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 3.6e-11 74.7 133 34.6
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 1.4e-10 72.8 120 34.2
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 1.4e-10 72.8 78 50.0
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 2.3e-10 72.0 158 32.3
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 3.0e-10 71.6 173 30.6
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 5.2e-10 70.9 124 33.9
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 8.8e-10 70.1 168 28.6
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 2.6e-09 68.6 98 36.7
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 3.4e-09 68.2 82 45.1
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 1.7e-08 65.9 138 33.3
PSO170G3003 Papaver somniferum HOM05D001735 ORTHO05D001640 1.1e-07 63.2 168 31.5
PSO063G5781 Papaver somniferum HOM05D001735 ORTHO05D001640 1.4e-07 62.8 168 31.5
PSO063G6933 Papaver somniferum HOM05D001735 ORTHO05D001640 1.4e-07 62.8 168 31.5
PSO170G3598 Papaver somniferum HOM05D001735 ORTHO05D001640 1.4e-07 62.8 168 32.1
PSO210G1866 Papaver somniferum HOM05D001735 ORTHO05D001640 1.4e-07 62.8 168 31.5
PSO339G0231 Papaver somniferum HOM05D001735 ORTHO05D001640 1.4e-07 62.8 168 31.5
Dinv04851 Davidia involucrata HOM05D001735 ORTHO05D001640 2.4e-07 62.0 153 32.0
Aqoxy5G03520 Aquilegia oxysepala HOM05D001735 ORTHO05D001640 3.1e-07 61.6 163 29.4
PSO063G3829 Papaver somniferum HOM05D001735 ORTHO05D001640 3.1e-07 61.6 168 31.0
TAR374G1031 Trochodendron aralioides HOM05D001735 ORTHO05D001640 4.1e-07 61.2 155 31.0
PSO782G3763 Papaver somniferum HOM05D001735 ORTHO05D001640 1.2e-06 59.7 168 31.0
Nitab4.5_0010847g0010 Nicotiana tabacum HOM05D001735 ORTHO05D001640 2.7e-06 58.5 166 32.5
TAR622G0673 Trochodendron aralioides HOM05D001735 ORTHO05D001640 3.5e-06 58.2 154 30.5


User provided reference genes

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