Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0094s0023 Marchantia polymorpha HOM05D004998 ORTHO05D006104 2.5e-54 215.3 116 100.0
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 1.1e-09 67.0 109 45.0
Solyc06g005600.3 Solanum lycopersicum HOM05D004998 ORTHO05D006104 7.0e-09 64.3 114 42.1
Sopen06g001560 Solanum pennellii HOM05D004998 ORTHO05D006104 7.0e-09 64.3 114 42.1
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 1.6e-08 63.2 88 51.1
PGSC0003DMG400002149 Solanum tuberosum HOM05D004998 ORTHO05D006104 1.6e-08 63.2 114 40.4
DCAR_005961 Daucus carota HOM05D004998 ORTHO05D006104 2.7e-08 62.4 99 42.4
CsaV3_6G016720 Cucumis sativus L. HOM05D004998 ORTHO05D006104 3.5e-08 62.0 97 47.4
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 3.5e-08 62.0 88 51.1
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 3.5e-08 62.0 88 51.1
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 3.5e-08 62.0 88 51.1
Pp3c16_15780 Physcomitrium patens HOM05D004998 ORTHO05D006104 3.5e-08 62.0 121 38.0
TPR.G5593 Trifolium pratense HOM05D004998 ORTHO05D006104 4.5e-08 61.6 80 50.0
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 5.9e-08 61.2 95 45.3
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 5.9e-08 61.2 111 45.0
C03p13690 Brassica napus HOM05D004998 ORTHO05D006104 7.7e-08 60.8 118 39.0
Haze_24126 Corylus avellana HOM05D004998 ORTHO05D006104 1.0e-07 60.5 98 45.9
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 1.0e-07 60.5 111 41.4
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 1.3e-07 60.1 88 47.7
Medtr2g097480 Medicago truncatula HOM05D004998 ORTHO05D006104 2.3e-07 59.3 80 50.0
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 2.3e-07 59.3 111 43.2
SalBow3G1756 Salvia bowleyana HOM05D004998 ORTHO05D006104 2.3e-07 59.3 88 48.9
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 2.9e-07 58.9 90 46.7
arahy.Tifrunner.gnm1.ann1.AD2TJP Arachis hypogaea HOM05D004998 ORTHO05D006104 2.9e-07 58.9 91 47.3
arahy.Tifrunner.gnm1.ann1.JSTV8M Arachis hypogaea HOM05D004998 ORTHO05D006104 2.9e-07 58.9 91 47.3
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 2.9e-07 58.9 105 43.8
MELO3C025903.2 Cucumis melo HOM05D004998 ORTHO05D006104 2.9e-07 58.9 89 49.4
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 2.9e-07 58.9 104 46.2
Ah.08g219770 Amaranthus hybridus HOM05D004998 ORTHO05D006104 3.8e-07 58.5 116 41.4
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 3.8e-07 58.5 113 40.7
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 5.0e-07 58.2 113 38.1
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 5.0e-07 58.2 99 40.4
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 6.6e-07 57.8 88 45.5
EL10Ac7g16043 Beta vulgaris HOM05D004998 ORTHO05D006104 6.6e-07 57.8 80 47.5
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 6.6e-07 57.8 100 45.0
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 8.6e-07 57.4 86 46.5
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 8.6e-07 57.4 106 41.5
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 8.6e-07 57.4 103 45.6
SGA_v2.0_scaffold41G15739 Striga asiatica HOM05D004998 ORTHO05D006104 8.6e-07 57.4 110 38.2
CARHR285830 Cardamine hirsuta HOM05D004998 ORTHO05D006104 1.1e-06 57.0 100 43.0
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 1.1e-06 57.0 87 46.0
Lj3g0014072 Lotus japonicus HOM05D004998 ORTHO05D006104 1.1e-06 57.0 96 45.8
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 1.5e-06 56.6 106 40.6
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 1.5e-06 56.6 88 47.7
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 1.5e-06 56.6 80 48.8
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 1.5e-06 56.6 108 38.9
Gorai.009G098000 Gossypium raimondii HOM05D004998 ORTHO05D006104 1.9e-06 56.2 88 48.9
HanXRQChr07g0197281 Helianthus annuus HOM05D004998 ORTHO05D006104 1.9e-06 56.2 94 38.3
Nn2g13381 Nelumbo nucifera HOM05D004998 ORTHO05D006104 1.9e-06 56.2 95 46.3
ATR0559G067 Amborella trichopoda HOM05D004998 ORTHO05D006104 2.5e-06 55.8 91 40.7
BcaB08g36256 Brassica carinata HOM05D004998 ORTHO05D006104 2.5e-06 55.8 126 38.1
BraA10t43749Z Brassica rapa HOM05D004998 ORTHO05D006104 2.5e-06 55.8 91 42.9
ECA247G2861 Erigeron canadensis HOM05D004998 ORTHO05D006104 2.5e-06 55.8 99 38.4
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 2.5e-06 55.8 105 41.9
Sp6g21150 Schrenkiella parvula HOM05D004998 ORTHO05D006104 2.5e-06 55.8 100 43.0
AUR62001761 Chenopodium quinoa HOM05D004998 ORTHO05D006104 3.3e-06 55.5 99 40.4
AUR62009547 Chenopodium quinoa HOM05D004998 ORTHO05D006104 3.3e-06 55.5 99 40.4
FAN11G2014 Fragaria x ananassa HOM05D004998 ORTHO05D006104 3.3e-06 55.5 100 41.0
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 3.3e-06 55.5 109 43.1
PSO339G2709 Papaver somniferum HOM05D004998 ORTHO05D006104 3.3e-06 55.5 125 41.6
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 3.3e-06 55.5 71 45.1
Aa31LG4G15620 Aethionema arabicum HOM05D004998 ORTHO05D006104 4.2e-06 55.1 107 42.1
Cc01_g13080 Coffea canephora HOM05D004998 ORTHO05D006104 4.2e-06 55.1 91 42.9
Glyma.13G337700 Glycine max HOM05D004998 ORTHO05D006104 4.2e-06 55.1 109 40.4
Gohir.D03G123600 Gossypium hirsutum HOM05D004998 ORTHO05D006104 4.2e-06 55.1 89 46.1
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 4.2e-06 55.1 91 42.9
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 5.5e-06 54.7 88 46.6
COL.COLO4_18543 Corchorus olitorius HOM05D004998 ORTHO05D006104 5.5e-06 54.7 89 47.2
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 5.5e-06 54.7 80 46.2
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 7.2e-06 54.3 86 46.5
Gohir.D05G094800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 7.2e-06 54.3 109 43.1
Peaxi162Scf00092g01117 Petunia axillaris HOM05D004998 ORTHO05D006104 7.2e-06 54.3 105 36.2
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 7.2e-06 54.3 91 41.8
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 7.2e-06 54.3 96 41.7
A02p07120 Brassica napus HOM05D004998 ORTHO05D006104 9.5e-06 53.9 91 41.8
Gohir.A03G043800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 9.5e-06 53.9 112 41.1
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 9.5e-06 53.9 93 44.1


User provided reference genes

Program Settings