Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0094s0008 Marchantia polymorpha HOM05D001069 ORTHO05D007586 1.4e-47 193.0 127 100.0
Pp3c16_6640 Physcomitrium patens HOM05D001069 ORTHO05D007586 4.6e-38 161.4 127 75.6
RcHm_v2.0_Chr3g0450701 Rosa chinensis HOM05D001069 ORTHO05D007586 1.6e-35 152.9 127 61.4
FvH4_6g02700 Fragaria vesca HOM05D001069 ORTHO05D007586 1.4e-34 149.8 127 59.8
FAN05G3732 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.4e-34 149.8 127 59.8
FAN09G0270 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.4e-34 149.8 127 59.8
FAN14G1639 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.4e-34 149.8 127 59.8
FAN14G4385 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.4e-34 149.8 127 59.8
FAN14G5212 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.4e-34 149.8 127 59.8
AagrBONN_evm.TU.Sc2ySwM_369.398 Anthoceros agrestis HOM05D001069 ORTHO05D007586 1.8e-34 149.4 127 78.0
THA.LOC104823751 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 1.8e-34 149.4 127 59.8
Glyma.10G162900 Glycine max HOM05D001069 ORTHO05D007586 3.1e-34 148.7 127 60.6
Glyma.20G225500 Glycine max HOM05D001069 ORTHO05D007586 3.1e-34 148.7 127 60.6
FAN02G3324 Fragaria x ananassa HOM05D001069 ORTHO05D007586 4.0e-34 148.3 127 59.1
Gohir.D13G107700 Gossypium hirsutum HOM05D001069 ORTHO05D007586 4.0e-34 148.3 128 60.9
VMungo0720G0790 Vigna mungo HOM05D001069 ORTHO05D007586 4.0e-34 148.3 127 59.8
Phvul.007G187900 Phaseolus vulgaris HOM05D001069 ORTHO05D007586 5.3e-34 147.9 127 59.8
Gohir.A13G104300 Gossypium hirsutum HOM05D001069 ORTHO05D007586 6.9e-34 147.5 128 60.2
MD04G1225700 Malus domestica HOM05D001069 ORTHO05D007586 6.9e-34 147.5 127 59.1
Manes.09G151800 Manihot esculenta HOM05D001069 ORTHO05D007586 6.9e-34 147.5 127 59.8
arahy.Tifrunner.gnm1.ann1.SY74BB Arachis hypogaea HOM05D001069 ORTHO05D007586 9.0e-34 147.1 127 59.1
PGR004G2600 Punica granatum HOM05D001069 ORTHO05D007586 9.0e-34 147.1 127 59.1
Lalb_Chr06g0168091 Lupinus albus HOM05D001069 ORTHO05D007586 1.2e-33 146.7 127 59.8
CiPaw.07G068400 Carya illinoinensis HOM05D001069 ORTHO05D007586 1.5e-33 146.4 127 59.8
Gorai.013G120600 Gossypium raimondii HOM05D001069 ORTHO05D007586 1.5e-33 146.4 122 60.7
MD12G1242900 Malus domestica HOM05D001069 ORTHO05D007586 1.5e-33 146.4 127 59.1
Duzib177G1121 Durio zibethinus HOM05D001069 ORTHO05D007586 2.0e-33 146.0 128 60.2
Lalb_Chr21g0311011 Lupinus albus HOM05D001069 ORTHO05D007586 2.0e-33 146.0 127 59.1
THA.LOC104805822 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 2.0e-33 146.0 127 59.1
CSS0013670 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 2.6e-33 145.6 127 58.3
CSS0018717 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 2.6e-33 145.6 127 58.3
Prupe.6G344500 Prunus persica HOM05D001069 ORTHO05D007586 2.6e-33 145.6 127 58.3
Thecc.05G281200 Theobroma cacao HOM05D001069 ORTHO05D007586 2.6e-33 145.6 128 60.2
CiPaw.08G122900 Carya illinoinensis HOM05D001069 ORTHO05D007586 3.4e-33 145.2 127 57.5
Nn1g02583 Nelumbo nucifera HOM05D001069 ORTHO05D007586 3.4e-33 145.2 127 57.5
Rhsim07G0074100 Rhododendron simsii HOM05D001069 ORTHO05D007586 3.4e-33 145.2 127 58.3
MELO3C004390.2 Cucumis melo HOM05D001069 ORTHO05D007586 5.8e-33 144.4 127 58.3
HanXRQChr17g0559331 Helianthus annuus HOM05D001069 ORTHO05D007586 5.8e-33 144.4 127 71.7
Psat6g145040 Pisum sativum HOM05D001069 ORTHO05D007586 5.8e-33 144.4 127 58.3
CANSAT54G2612 Cannabis sativa HOM05D001069 ORTHO05D007586 7.6e-33 144.1 125 59.2
Haze_04370 Corylus avellana HOM05D001069 ORTHO05D007586 7.6e-33 144.1 127 58.3
Sed0025346 Sechium edule HOM05D001069 ORTHO05D007586 7.6e-33 144.1 127 59.1
EL10Ac4g09163 Beta vulgaris HOM05D001069 ORTHO05D007586 1.3e-32 143.3 127 57.5
Duzib128G0644 Durio zibethinus HOM05D001069 ORTHO05D007586 1.3e-32 143.3 128 58.6
MBI04_g44868_MAGBIO Magnolia biondii HOM05D001069 ORTHO05D007586 1.3e-32 143.3 127 70.9
Zm00001eb051110 Zea mays HOM05D001069 ORTHO05D007586 1.3e-32 143.3 127 69.3
Actinidia32808 Actinidia chinensis HOM05D001069 ORTHO05D007586 1.7e-32 142.9 127 56.7
CsaV3_2G004010 Cucumis sativus L. HOM05D001069 ORTHO05D007586 1.7e-32 142.9 127 63.8
Sc09g0003960 Simmondsia chinensis HOM05D001069 ORTHO05D007586 1.7e-32 142.9 127 57.5
Dinv20292 Davidia involucrata HOM05D001069 ORTHO05D007586 2.2e-32 142.5 127 56.7
Os03g0628900 Oryza sativa ssp. japonica HOM05D001069 ORTHO05D007586 2.2e-32 142.5 127 55.9
Potri.005G054500 Populus trichocarpa HOM05D001069 ORTHO05D007586 2.2e-32 142.5 127 58.3
GSVIVG01036275001 Vitis vinifera HOM05D001069 ORTHO05D007586 2.2e-32 142.5 127 57.5
ATR0665G433 Amborella trichopoda HOM05D001069 ORTHO05D007586 3.8e-32 141.7 127 61.4
Manes.08G135700 Manihot esculenta HOM05D001069 ORTHO05D007586 3.8e-32 141.7 127 57.5
arahy.Tifrunner.gnm1.ann1.AYUH3A Arachis hypogaea HOM05D001069 ORTHO05D007586 4.9e-32 141.4 127 56.7
AUR62004967 Chenopodium quinoa HOM05D001069 ORTHO05D007586 4.9e-32 141.4 127 58.3
TPR.G12907 Trifolium pratense HOM05D001069 ORTHO05D007586 4.9e-32 141.4 127 57.5
Cfa006409 Carpinus fangiana HOM05D001069 ORTHO05D001549 6.4e-32 141.0 124 58.1
AUR62000994 Chenopodium quinoa HOM05D001069 ORTHO05D007586 6.4e-32 141.0 127 58.3
ECA233G1896 Erigeron canadensis HOM05D000316 ORTHO05D000374 6.4e-32 141.0 126 57.1
Zm00001eb218870 Zea mays HOM05D001069 ORTHO05D007586 6.4e-32 141.0 127 69.3
Eucgr.H04324 Eucalyptus grandis HOM05D001069 ORTHO05D007586 8.4e-32 140.6 127 55.9
Medtr1g080770 Medicago truncatula HOM05D001069 ORTHO05D007586 8.4e-32 140.6 127 56.7
PGSC0003DMG401019457 Solanum tuberosum HOM05D001069 ORTHO05D007586 1.4e-31 139.8 129 67.4
Potri.013G042100 Populus trichocarpa HOM05D001069 ORTHO05D007586 1.9e-31 139.4 127 56.7
Sabra05G0047400 Salix brachista HOM05D001069 ORTHO05D001549 1.9e-31 139.4 127 57.5
ClCG02G016730 Citrullus lanatus HOM05D001069 ORTHO05D007586 3.2e-31 138.7 124 56.5
QL03p027238 Quercus lobata HOM05D001069 ORTHO05D007586 3.2e-31 138.7 126 56.3
BcaB07g34137 Brassica carinata HOM05D001069 ORTHO05D007586 4.2e-31 138.3 128 57.0
Hund22103 Selenicereus undatus HOM05D001069 ORTHO05D007586 4.2e-31 138.3 124 58.1
Sp1g07420 Schrenkiella parvula HOM05D001069 ORTHO05D007586 5.5e-31 137.9 129 56.6
MSTRG.20449 Avicennia marina HOM05D001069 ORTHO05D007586 7.1e-31 137.5 129 55.8
A06p05680 Brassica napus HOM05D001069 ORTHO05D007586 7.1e-31 137.5 128 57.0
Ca_10042_v3 Cicer arietinum L. HOM05D001069 ORTHO05D007586 7.1e-31 137.5 124 56.5
Lj5g0026442 Lotus japonicus HOM05D001069 ORTHO05D007586 7.1e-31 137.5 125 55.2
C05p06850 Brassica napus HOM05D001069 ORTHO05D007586 9.3e-31 137.1 125 56.0
TAR636G2667 Trochodendron aralioides HOM05D001069 ORTHO05D001549 9.3e-31 137.1 126 54.8
CDE06G2591 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 1.2e-30 136.7 127 55.1
Peaxi162Scf00282g00417 Petunia axillaris HOM05D001069 ORTHO05D007586 1.6e-30 136.3 129 55.8
BcaC07g38446 Brassica carinata HOM05D001069 ORTHO05D007586 2.1e-30 136.0 131 54.2
C08p12160 Brassica napus HOM05D001069 ORTHO05D007586 2.1e-30 136.0 131 54.2
CAN.G134.94 Capsicum annuum HOM05D001069 ORTHO05D007586 2.1e-30 136.0 122 55.7
Ciclev10029576m.g Citrus clementina HOM05D001069 ORTHO05D007586 2.1e-30 136.0 126 54.0
Atru.chr2.835 Acer truncatum HOM05D001069 ORTHO05D007586 2.7e-30 135.6 126 54.8
Solyc01g097300.4 Solanum lycopersicum HOM05D001069 ORTHO05D007586 2.7e-30 135.6 129 67.4
Sopen01g040970 Solanum pennellii HOM05D001069 ORTHO05D007586 2.7e-30 135.6 129 67.4
AL1G19210 Arabidopsis lyrata HOM05D001069 ORTHO05D007586 3.5e-30 135.2 128 53.9
COL.COLO4_15368 Corchorus olitorius HOM05D001069 ORTHO05D007586 3.5e-30 135.2 122 55.7
Aa31sc20G40 Aethionema arabicum HOM05D001069 ORTHO05D007586 4.6e-30 134.8 125 55.2
DCAR_006651 Daucus carota HOM05D001069 ORTHO05D007586 4.6e-30 134.8 128 56.2
SMO356G0364 Selaginella moellendorffii HOM05D001069 ORTHO05D007586 6.0e-30 134.4 133 69.2
BolC5t29444H Brassica oleracea HOM05D001069 ORTHO05D007586 7.9e-30 134.0 118 57.6
BraA06t23778Z Brassica rapa HOM05D001069 ORTHO05D007586 7.9e-30 134.0 118 57.6
CDE07G0518 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 7.9e-30 134.0 127 64.6
HanXRQChr16g0514711 Helianthus annuus HOM05D001069 ORTHO05D007586 7.9e-30 134.0 126 55.6
Carub.0001s0812 Capsella rubella HOM05D001069 ORTHO05D007586 1.0e-29 133.7 118 55.9
CARHR008700 Cardamine hirsuta HOM05D001069 ORTHO05D007586 1.0e-29 133.7 126 53.2
Nn3g19512 Nelumbo nucifera HOM05D001069 ORTHO05D007586 1.0e-29 133.7 127 53.5
Oeu002656.1 Olea europaea HOM05D001069 ORTHO05D007586 1.0e-29 133.7 129 55.0
PSO210G4375 Papaver somniferum HOM05D001069 ORTHO05D007586 1.0e-29 133.7 126 54.0
A08p34980 Brassica napus HOM05D001069 ORTHO05D007586 1.3e-29 133.3 122 54.1
BraA08t35409Z Brassica rapa HOM05D001069 ORTHO05D007586 1.3e-29 133.3 122 54.1
Sed0020567 Sechium edule HOM05D001069 ORTHO05D007586 1.3e-29 133.3 127 52.8
Migut.B01094 Erythranthe guttata HOM05D001069 ORTHO05D007586 1.8e-29 132.9 129 54.3
Nitab4.5_0001592g0010 Nicotiana tabacum HOM05D001069 ORTHO05D007586 2.3e-29 132.5 129 54.3
Nitab4.5_0008996g0040 Nicotiana tabacum HOM05D001069 ORTHO05D007586 2.3e-29 132.5 129 54.3
unitig_52.g17389 Utricularia gibba HOM05D001069 ORTHO05D007586 2.3e-29 132.5 122 54.9
Cc02_g30720 Coffea canephora HOM05D001069 ORTHO05D007586 3.0e-29 132.1 129 55.8
Aqoxy2G00949 Aquilegia oxysepala HOM05D001069 ORTHO05D007586 3.9e-29 131.7 126 53.2
AT1G08780 Arabidopsis thaliana HOM05D001069 ORTHO05D007586 3.9e-29 131.7 128 53.1
PSO832G3124 Papaver somniferum HOM05D001069 ORTHO05D007586 3.9e-29 131.7 126 53.2
BcaNung06267 Brassica carinata HOM05D001069 ORTHO05D007586 6.7e-29 131.0 129 51.9
HPP92_026288 Vanilla planifolia HOM05D001069 ORTHO05D007586 6.7e-29 131.0 127 63.0
Thhalv10009095m.g Eutrema salsugineum HOM05D001069 ORTHO05D007586 8.7e-29 130.6 129 53.5
SGA_v2.0_scaffold5G02970 Striga asiatica HOM05D001069 ORTHO05D007586 1.5e-28 129.8 129 53.5
TWI12G0612 Tripterygium wilfordii HOM05D001069 ORTHO05D007586 1.5e-28 129.8 127 52.8
CBR_g8595 Chara braunii HOM05D001069 ORTHO05D007586 2.1e-27 125.9 127 52.8
arahy.Tifrunner.gnm1.ann1.VQ2WN5 Arachis hypogaea HOM05D001069 ORTHO05D007586 5.3e-26 121.3 86 66.3
BolC8t48854H Brassica oleracea HOM05D001069 ORTHO05D007586 6.9e-26 120.9 147 45.6
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 3.9e-21 105.1 121 50.4
MCO16G237 Micromonas commoda HOM05D001069 ORTHO05D007586 2.0e-17 92.8 120 40.8
vmacro13808 Vaccinium macrocarpon HOM05D001069 ORTHO05D007586 1.0e-13 80.5 84 48.8
Cre16.g671750 Chlamydomonas reinhardtii HOM05D001069 ORTHO05D007586 1.4e-13 80.1 118 39.0
Sabra13G0038700 Salix brachista HOM05D001069 ORTHO05D007586 3.9e-13 78.6 106 42.5
PRCOL_00003582 Prasinoderma coloniale HOM05D001069 ORTHO05D007586 8.8e-13 77.4 121 37.2
Lsat_1_v5_gn_5_68360 Lactuca sativa HOM05D001069 ORTHO05D007586 1.1e-12 77.0 84 46.4
SHI18420 Sapria himalayana HOM05D001069 ORTHO05D007586 7.4e-12 74.3 106 41.5
arahy.Tifrunner.gnm1.ann1.JAH3YR Arachis hypogaea HOM05D001069 ORTHO05D007586 1.2e-09 67.0 40 77.5
Sabra13G0038600 Salix brachista HOM05D000002 ORTHO05D000001 2.0e-09 66.2 47 70.2
arahy.Tifrunner.gnm1.ann1.X5I3PL Arachis hypogaea HOM05D001069 ORTHO05D007586 5.9e-09 64.7 43 67.4
TAR633G2811 Trochodendron aralioides HOM05D001069 ORTHO05D007586 1.6e-06 56.6 37 70.3


User provided reference genes

Program Settings