Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 4.5e-256 887.5 467 100.0
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 4.9e-194 681.4 469 74.2
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 2.4e-193 679.1 469 74.0
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 2.7e-192 675.6 469 74.0
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 4.6e-192 674.9 469 74.2
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 4.6e-192 674.9 468 73.5
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 1.0e-191 673.7 469 73.6
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 2.3e-191 672.5 469 73.3
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 2.3e-191 672.5 469 73.1
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 3.0e-191 672.2 469 73.1
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 3.0e-191 672.2 469 73.8
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 3.9e-191 671.8 469 73.1
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 5.0e-191 671.4 470 73.4
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 6.6e-191 671.0 469 73.6
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 6.6e-191 671.0 469 73.6
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.9e-190 669.5 463 73.4
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 4.3e-190 668.3 469 73.1
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 5.6e-190 667.9 469 72.7
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 5.6e-190 667.9 469 73.3
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 5.6e-190 667.9 467 73.2
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 5.6e-190 667.9 469 71.4
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 7.3e-190 667.5 468 72.6
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 7.3e-190 667.5 470 72.6
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 1.6e-189 666.4 469 73.3
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 2.8e-189 665.6 470 71.9
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 3.6e-189 665.2 469 72.5
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 3.6e-189 665.2 469 71.9
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 4.7e-189 664.8 470 71.9
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 6.2e-189 664.5 469 72.3
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 8.0e-189 664.1 469 72.1
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 8.0e-189 664.1 470 72.3
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 8.0e-189 664.1 493 70.8
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 1.8e-188 662.9 463 73.0
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 1.8e-188 662.9 469 71.9
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 2.3e-188 662.5 469 72.5
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 3.1e-188 662.1 469 71.4
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 3.1e-188 662.1 469 71.0
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 3.1e-188 662.1 470 71.5
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 4.0e-188 661.8 468 72.0
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 1.2e-187 660.2 470 71.7
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 2.0e-187 659.4 469 72.7
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 2.6e-187 659.1 506 68.0
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 4.4e-187 658.3 469 72.7
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 4.4e-187 658.3 469 72.7
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 7.5e-187 657.5 469 72.1
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 9.8e-187 657.1 469 71.6
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 9.8e-187 657.1 469 72.5
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 1.3e-186 656.8 468 70.9
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 1.7e-186 656.4 469 71.6
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 4.9e-186 654.8 469 72.7
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 6.4e-186 654.4 469 71.6
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 8.3e-186 654.1 469 71.6
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 1.4e-185 653.3 469 71.6
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 1.4e-185 653.3 469 71.6
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 1.4e-185 653.3 469 71.6
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 1.9e-185 652.9 469 71.4
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 2.4e-185 652.5 469 70.8
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 2.4e-185 652.5 506 68.4
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 3.2e-185 652.1 469 71.6
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 3.2e-185 652.1 469 71.6
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 4.1e-185 651.7 469 71.6
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 1.2e-184 650.2 469 72.3
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 1.6e-184 649.8 469 70.6
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 7.8e-184 647.5 469 71.6
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 7.8e-184 647.5 468 70.5
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 1.0e-183 647.1 469 70.4
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 1.3e-183 646.7 469 70.8
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 3.9e-183 645.2 469 70.4
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 5.1e-183 644.8 469 71.0
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 1.5e-182 643.3 469 69.7
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 1.9e-182 642.9 469 70.4
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 1.9e-182 642.9 449 73.3
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 3.3e-182 642.1 469 71.0
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 3.3e-182 642.1 470 70.4
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 3.3e-182 642.1 470 70.4
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 9.5e-182 640.6 469 70.6
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 1.2e-181 640.2 469 70.4
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 1.8e-180 636.3 471 70.1
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 1.8e-180 636.3 497 67.4
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 1.5e-179 633.3 545 63.1
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 3.4e-179 632.1 493 66.9
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 7.1e-177 624.4 469 69.5
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 7.8e-176 620.9 470 69.6
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 1.2e-173 613.6 469 69.1
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 2.8e-173 612.5 491 66.2
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 4.0e-172 608.6 443 71.3
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 1.2e-171 607.1 470 67.9
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 7.8e-168 594.3 492 64.0
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 1.1e-164 583.9 418 73.2
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 4.0e-164 582.0 462 64.7
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 2.0e-163 579.7 397 74.3
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 1.3e-159 567.0 418 70.8
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 1.3e-159 567.0 418 70.8
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 1.7e-159 566.6 468 65.6
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 8.7e-159 564.3 469 61.8
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 4.3e-158 562.0 461 65.3
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.2e-155 553.9 417 70.3
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 1.4e-153 547.0 423 68.3
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 6.0e-152 541.6 383 73.1
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 3.0e-151 539.3 469 63.1
CiPaw.05G212800 Carya illinoinensis HOM05D005039 ORTHO05D006145 9.3e-137 491.1 348 70.1
VMungo1127G0275 Vigna mungo HOM05D005039 ORTHO05D006145 1.6e-136 490.3 374 67.6
Cc02_g00100 Coffea canephora HOM05D005039 ORTHO05D006145 3.5e-136 489.2 373 67.0
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 3.5e-136 489.2 468 58.8
Prupe.2G329100 Prunus persica HOM05D005039 ORTHO05D006145 1.3e-135 487.3 340 74.7
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 5.7e-134 481.9 365 69.9
Lj3A884T54 Lonicera japonica HOM05D005039 ORTHO05D006145 9.7e-126 454.5 324 73.5
BcaB05g25317 Brassica carinata HOM05D005039 ORTHO05D006145 2.6e-118 429.9 312 68.9
CDE11G0732 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 9.1e-108 394.8 323 66.3
Actinidia34332 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.2e-107 394.4 282 74.5
MD01G1239200 Malus domestica HOM05D005039 ORTHO05D006145 1.4e-103 380.9 365 56.4
PGSC0003DMG401017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 2.9e-98 363.2 246 76.8
AagrBONN_evm.TU.Sc2ySwM_369.165 Anthoceros agrestis HOM05D005039 ORTHO05D006145 1.2e-78 298.1 300 58.0
Cre16.g674739 Chlamydomonas reinhardtii HOM05D005039 ORTHO05D006145 5.8e-78 295.8 499 37.3
AagrBONN_evm.TU.Sc2ySwM_117.727 Anthoceros agrestis HOM05D005039 ORTHO05D006145 7.3e-73 278.9 210 64.8
AagrBONN_evm.TU.Sc2ySwM_369.410 Anthoceros agrestis HOM05D005039 ORTHO05D006145 8.9e-71 271.9 293 56.3
Actinidia24520 Actinidia chinensis HOM05D005039 ORTHO05D006145 7.5e-70 268.9 173 74.6
PGSC0003DMG402017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 7.5e-70 268.9 182 68.1
COL.COLO4_15139 Corchorus olitorius HOM05D005039 ORTHO05D006145 1.7e-66 257.7 312 50.6
Haze_00371 Corylus avellana HOM05D005039 ORTHO05D006145 4.0e-63 246.5 238 57.6
BcaC03g14670 Brassica carinata HOM05D005039 ORTHO05D006145 9.6e-57 225.3 160 73.8
BcaB05g24073 Brassica carinata HOM05D005039 ORTHO05D006145 9.6e-49 198.7 138 75.4
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 1.3e-48 198.4 403 37.0
PRCOL_00000150 Prasinoderma coloniale HOM05D005039 ORTHO05D006145 1.1e-47 195.3 484 33.5
MCO06G137 Micromonas commoda HOM05D005039 ORTHO05D006145 2.2e-45 187.6 327 38.5
Cc02_g00110 Coffea canephora HOM05D005039 ORTHO05D006145 5.4e-44 183.0 119 78.2
EL10Ac3g05835 Beta vulgaris HOM05D005039 ORTHO05D006145 4.6e-43 179.9 195 56.4
SEGI_29432 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 1.6e-40 171.4 111 79.3
CDE11G0023 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 3.6e-40 170.2 107 72.9
SEGI_13634 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 6.2e-40 169.5 105 77.1
CSS0027952 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.8e-31 141.4 87 79.3
Cpa.g.sc43.133 Carica papaya HOM05D005039 ORTHO05D006145 2.1e-27 127.9 111 64.0
CSS0015728 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 3.0e-26 124.0 76 77.6
Cpa.g.sc43.132 Carica papaya HOM05D005039 ORTHO05D006145 1.1e-23 115.5 71 76.1
CSS0031224 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 3.2e-20 104.0 74 68.9
COL.COLO4_15138 Corchorus olitorius HOM05D005039 ORTHO05D006145 7.2e-20 102.8 70 72.9
SEGI_05893 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 1.6e-19 101.7 60 80.0
Oeu028985.2 Olea europaea HOM05D005039 ORTHO05D006145 2.1e-19 101.3 98 56.1
Cpa.g.sc43.136 Carica papaya HOM05D005039 ORTHO05D006145 1.0e-18 99.0 70 72.9
Carub.0008s0531 Capsella rubella HOM05D005039 ORTHO05D006145 1.3e-18 98.6 80 63.8
ClCG09G017320 Citrullus lanatus HOM05D005039 ORTHO05D006145 1.8e-18 98.2 71 70.4
SHI14975 Sapria himalayana HOM05D000023 ORTHO05D000014 5.1e-18 96.7 71 69.0
Solyc07g045270.2 Solanum lycopersicum HOM05D005039 ORTHO05D006145 2.8e-16 90.9 57 68.4
Carub.0008s0533 Capsella rubella HOM05D005039 ORTHO05D006145 1.7e-13 81.6 53 75.5
EL10Ac7g16242 Beta vulgaris HOM05D005039 ORTHO05D006145 7.2e-12 76.3 48 79.2
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 6.7e-10 69.7 59 64.4
MD01G1239000 Malus domestica HOM05D005039 ORTHO05D006145 7.4e-09 66.2 46 82.6
Potri.019G042201 Populus trichocarpa HOM05D005039 ORTHO05D006145 9.7e-09 65.9 52 73.1


User provided reference genes

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